Circadian entrainment by feeding cycles in house sparrows,Passer domesticus

Summary We studied the potential zeitgeber qualities of periodic food availability on the circadian rhythms of locomotor and feeding activity of house sparrows. The birds were initially held in a LD-cycle of 12:12 h, with food restricted to the light phase. After transfer to constant dim light, the birds remained entrained by the restricted feeding schedule. Following an exposure to food ad libitum conditions, the rhythms could be re-synchronized by the feeding cycle. Shortening of the zeitgeber period to 23.5 h resulted in the loss of entrainment in most birds, whereas a longer zeitgeber period of 25 h re-entrained the rhythms of most birds. Although these results prove that periodic food availability can act as a zeitgeber for the circadian rhythms of house sparrows, several features of our data indicate that restricted feeding is only a weak zeitgeber. The pattern of feeding activity prior to the daily time of food access shown under some experimental conditions suggests that anticipation is due to a positive phase-angle difference of the birds' normal circadian system rather than being caused by a separate pacemaker.     

Investigating lithium ion conductivity in amorphous solids containing [V10O28]6− clusters by computer simulation

Computer simulation method was applied to investigate the migration of lithium ion in three amorphous solid systems containing polyoxovanadate (POV) clusters [V₁₀O₂₈]^6 ? . The cluster was adopted from a recently synthesized crystalline poly[octa-μ-aqua-octaaqua-μ-decavanadato-hexalithium] (POAODH). The simulated POV systems correspond to amorphous solid half-dehydrated solid and completely dehydrated solid doped with LiCl salt. The simulation results show large diffusion constants of lithium ions in all systems in spite of highly negatively charged [V₁₀O₂₈]^6 ?  clusters presented in the system. The estimated ionic conductivity due to the migration of lithium ions reaches a magnitude of 10^? 4 S/m. The conductivity increases as the water content in the system decreases. The analysis of moving trajectories shows the lithium ion moves around the oxygen sites of POV clusters and hops between them. The estimated displacement of lithium ion is about 4～5 Å, which is much larger than the corresponding displacement of lithium ion in a polymer matrix. Rapidly rotating clusters shown by orientation correlation function analysis, in conjunction with the large separation between clusters in the system, provides favorable conditions for the large amplitude migration of lithium ions.     

Proximal recognition sites facilitate intrasite hopping by DNA adenine methyltransferase: mechanistic exploration of epigenetic gene regulation

The methylation of adenine in palindromic 5'-GATC-3' sites by Escherichia coli Dam supports diverse roles, including the essential regulation of virulence genes in several human pathogens. As a result of a unique hopping mechanism, Dam methylates both strands of the same site prior to fully dissociating from the DNA, a process referred to as intrasite processivity. The application of a DpnI restriction endonuclease-based assay allowed the direct interrogation of this mechanism with a variety of DNA substrates. Intrasite processivity is disrupted when the DNA flanking a single GATC site is longer than 400 bp on either side. Interestingly, the introduction of a second GATC site within this flanking DNA reinstates intrasite methylation of both sites. Our results show that intrasite methylation occurs only when GATC sites are clustered, as is found in gene segments both known and postulated to undergo in vivo epigenetic regulation by Dam methylation. We propose a model for intrasite methylation in which Dam bound to flanking DNA is an obligate intermediate. Our results provide insights into how intrasite processivity, which appears to be context-dependent, may contribute to the diverse biological roles that are carried out by Dam.     

Linear center-of-mass dynamics emerge from non-linear leg-spring properties in human hopping

Given the almost linear relationship between ground-reaction force and leg length, bouncy gaits are commonly described using spring–mass models with constant leg-spring parameters. In biological systems, however, spring-like properties of limbs may change over time. Therefore, it was investigated how much variation of leg-spring parameters is present during vertical human hopping. In order to do so, rest-length and stiffness profiles were estimated from ground-reaction forces and center-of-mass dynamics measured in human hopping. Trials included five hopping frequencies ranging from 1.2 to 3.6 Hz. Results show that, even though stiffness and rest length vary during stance, for most frequencies the center-of-mass dynamics still resemble those of a linear spring–mass hopper. Rest-length and stiffness profiles differ for slow and fast hopping. Furthermore, at 1.2 Hz two distinct control schemes were observed.     

A motion analysis marker-based method of determining centre of pressure during two-legged hopping

The fixed position of force plates has led researchers to pursue alternative methods of determining centre of pressure (CoP) location. To date, errors reported using alternative methods to the force plate during dynamic tasks have been high. The aim of this study was to investigate the accuracy of a motion analysis marker-based system to determine CoP during a two-legged hopping task. Five markers were attached to the left and right feet of eight healthy adults (5 females, 3 males, age: 25.0±2.8 years, height: 1.75±0.07 m, mass: 71.3±11.3 kg). Multivariate forward stepwise and forced entry linear regression was used with data from five participants to determine CoP position during quiet standing and hopping at various frequencies. Maximum standard error of the estimate of CoP position was 12 mm in the anteroposterior direction and 8 mm in the mediolateral. Cross-validation was performed using the remaining 3 participants. Maximum root mean square difference between the force plate and marker method was 14 mm for mediolateral CoP and 20 mm for anteroposterior CoP during 1.5 Hz hopping. Differences reduced to a maximum of 7 mm (mediolateral) and 14 mm (anteroposterior) for the other frequencies. The smallest difference in calculated sagittal plane ankle moment and timing of maximum moment was during 3.0 Hz hopping, and largest at 1.5 Hz. Results indicate the marker-based method of determining CoP may be a suitable alternative to a force plate to determine CoP position during a two-legged hopping task at frequencies greater than 1.5 Hz.     

Compensation in resting metabolism for experimentally increased activity

To study zebra finch allocation of energy to day and night at two different workloads, we assessed the daily energy turnover from: (1) metabolizable energy of the food, and (2) doubly-labeled water. In both experiments we imposed two levels of activity on captive zebra finches (Taeniopygia guttata), by applying different computer-controlled workload schedules. A low workload required 20 hops, and a high workload 40 hops to obtain 10 s access to food. In experiment 1, we further measured nocturnal energy expenditure by overnight oxygen consumption. From experiment 2 we derived an estimate of the costs of hopping activity, from inter-individual association of daily amount of hopping and daily energy expenditure. Surprisingly, the daily energy budget was, on average, reduced slightly when birds were subjected to a high workload. Since hopping activity was 50% higher during the high workload than during the low workload, the birds apparently compensated, even over-compensated, for the increased energetic demands of activity. Nocturnal energy expenditure was indeed reduced for the high workload, which was largely due to a reduction in resting metabolic rate. Economizing on energy was more than could have been accomplished by a reduction in mass alone, and we discuss the occurrence and potential mechanisms of physiological compensation. The amount of energy saved during the night did account for part of the total amount of energy saved. We surmise that the strategy of energetic compensation observed during the night was extended into the inactive hours of the day. Accepted: 10 July 1998     

应用主方程方法研究分子马达的定向运动

利用主方程的方法,研究了在一维三态周期跳跃模型下分子马达的定向运动。首先假定马达在任意两个相邻状态之间的跃迁距离（substeps）相等,对于给定的任意初始分布,得出了与时间有关的几率分布的解析表达式,包括到达稳态之前的所有的瞬态过程,由此可获得马达在各个时刻的漂移速率v、扩散系数D以及描述马达随机性质的随机参数r(randomness parameter）。同时不计算了马达到达稳态所需要的特征时间。根据马达的运动特点,我们又把以上结果推广到了不等间隔的情况,并引入了外力分配系数θj^ 和θj^-来表征外力对跃迁率的影响程度,以便于研究马达在拖动负载运动时的动力学行为,使之更符合生物化学的实际。并把计算结果（漂移速率v和随机参数r分别随[ATP]和外力f的变化关系）同实验进行了比较,与实验值符合较好。     

Inverse biomimetics: How robots can help to verify concepts concerning sensorimotor control of human arm and leg movements

Simulation test, hardware test and behavioral comparison test are proposed to experimentally verify whether a technical control concept for limb movements is logically precise, physically sound, and biologically relevant. Thereby, robot test-beds may play an integral part by mimicking functional limb movements. The procedure is exemplarily demonstrated for human aiming movements with the forearm: when comparing competitive control concepts, these movements are described best by a spring-like operating muscular-skeletal device which is assisted by feedforward control through an inverse internal model of the limb – without regress to a forward model of the limb. In a perspective on hopping, the concept of exploitive control is addressed, and its comparison to concepts derived from classical control theory advised.     

Hopping and climbing gait of Japanese Pygmy Woodpeckers (Picoides kizuki)

Single cycles of hopping and climbing were investigated in Japanese Pygmy Woodpeckers Picoides kizuki using motion analyses on video. Body movements on substrate angled from 0–90° were compared for every 10°. The body was inclined forward during stance phase for both small and large substrate angles, and the inclination amplitude increased when the substrate angle increased. The tail was bent ventrally almost simultaneously to this body inclination, and its amplitude was apparently high at large substrate angles. Most of the gait parameters changed when the stride length increased. The minimum body–tail angle and most of the parameters representing body movements during stance phase changed when the substrate angle increased, probably because gravity pulled the birds further backward when they were moving on a steeper slope. These parameters showed a clear difference between the data on substrate steeper than 40° and lower than 30°. The abrupt changes in these parameters most likely mean that the motor pattern changed from hopping to climbing between these angles.     

Hopping around an entropic barrier created by force

We use Langevin dynamics to investigate the role played by the recently discovered force-induced entropic energy barrier on the two-state hopping phenomena that has been observed in single RNA, DNA and protein molecules placed under a stretching force. Simple considerations about the free energy of a molecule readily show that the application of force introduces an entropic barrier separating the collapsed state of the molecule, from a force-driven extended conformation. A notable characteristic of the force induced barrier is its long distances to transition state, up to tens of nanometers, which renders the kinetics of crossing this barrier highly sensitive to an applied force. Langevin dynamics across such force induced barriers readily demonstrates the hopping behavior observed for a variety of single molecules placed under force. Such hopping is frequently interpreted as a manifestation of two-state folding/unfolding reactions observed in bulk experiments. However, given that such barriers do not exist at zero force these reactions do not take place at all in bulk.