Science in the age of mechanical reproduction: moral and epistemic relations between diagrams and photographs

Sociologists, philosophers and historians of science are gradually recognizing the importance of visual representation. This is part of a more general movement away from a theory-centric view of science and towards an interest in practical aspects of observation and experimentation. Rather than treating science as a matter of demonstrating the logical connection between theoretical and empirical statements, an increasing number of investigations are examining how scientists compose and use diagrams, graphs, photographs, micrographs, maps, charts, and related visual displays. This paper focuses on diagrams in biology, and tries to demonstrate how diagrams are an integral part of the production of scientific knowledge. In order to disclose some of the distinctive practical and analytical uses of diagrams, the paper contrasts the way diagrams and photographs are used in biological texts. Both diagrams and photographs are shown to be “constructions” that separately and together mediate the investigation of scientific phenoman.     

Woody plant encroachment in granite barrens on the Frontenac Arch,eastern Ontario,Canada

Aims

Woody plant encroachment is a widespread phenomenon affecting treeless or sparsely treed habitats. We aimed to determine the extent and timing of tree and shrub encroachment into rock barrens of eastern Ontario over the last century, and to assess implications for their ongoing management.

Location

Queen's University Biological Station in the Frontenac Arch ecoregion.

Methods

We quantified the extent of change in woody vegetation in 290 rock barrens using aerial photography from 1925, 1965, and 2008. Composition and structure of woody plant communities in 10 barrens was subsequently quantified in the field using plot-based sampling. Cores or cross-sections were obtained from individuals >1.5 m height and dendrochronological techniques were used to determine their age and identify temporal patterns of any woody encroachment.

Results

Aerial photography indicated that the mean proportion of woody plant cover in barrens increased 22.5% from 1925 to 2008. Dendroecological analysis supported this. Few trees were present prior to 1900 and most established since 1960. Fraxinus americana, Juniperus virginiana, and Juniperus communis were the most common woody species colonizing the barrens. Remnants of large Pinus strobus stumps with extensive charring were found in 90% of the sampled barrens at a mean density of 22.6 stumps ha⁻¹.

Conclusions

Rock barrens on the Frontenac Arch have changed substantially over the past century; gradually being colonized by trees and shrubs and losing their distinctly open character. Active management — including prescribed fire and mechanical thinning — may be necessary if there is a desire to maintain these barrens and the rare species they support as components of the region's biodiversity. However, identification of a reference state for restoration is complicated by the fact that the structure and composition of these habitats were undoubtedly altered by European land clearance in the 19th century, and that some of these areas likely existed as pine woodlands before that.     

A Comparison of Remote Sensing and Ground-Based Methods for Monitoring Wetland Restoration Success

Abstract Efficient and accurate vegetation sampling techniques are essential for the assessment of wetland restoration success. Remotely acquired data, used extensively in many locations, have not been widely used to monitor restored wetlands. We compared three different vegetation sampling techniques to determine the accuracy associated with each method when used to determine species composition and cover in restored Pacific coast wetlands dominated by Salicornia virginica (perennial pickleweed). Two ground‐based techniques, using quadrat and line intercept sampling, and a remote sensing technique, using low altitude, high resolution, color and color infrared photographs, were applied to estimate cover in three small restoration sites. The remote technique provided an accurate and efficient means of sampling vegetation cover, but individual species could not be identified, precluding estimates of species density and distribution. Aerial photography was determined to be an effective tool for vegetation monitoring of simple (i.e., single‐species) habitat types or when species identities are not important (e.g., when vegetation is developing on a new restoration site). The efficiency associated with these vegetation sampling techniques was dependent on the scale of the assessment, with aerial photography more efficient than ground‐based sampling methods for assessing large areas. However, the inability of aerial photography to identify individual species, especially mixed‐species stands common in southern California salt marshes, limits its usefulness for monitoring restoration success. A combination of aerial photography and ground‐based methods may be the most effective means of monitoring the success of large wetland restoration projects.     

Analysis of growth during geotropic curvature in seedling hypocotyls

Abstract. The patterns of growth in organs curving under the influence of gravity were analysed by time-lapse photography of cress and cucumber hypocotyls which were delimited into 1 mm zones by ion-exchange beads. Geotropic curvature resulted from changes in growth rate on both sides of the organ. Growth inhibition of varying degrees of intensity occurred in all the previously growing zones of the upper (concave) side. An absolute reduction in length due to compression frequently occurred in some zones. Also, in both species growth stimulation was observed on the lower (convex) side. The disparity in growth rate between the upper and lower surfaces varied with time, being more apparent in the subapical region in the first hour of curvature. A later promotion of growth rate on the lower surface subsequently increased the curvature of the more basal zones. Autotropic straightening occurred as a consequence of growth changes, both inhibitory and stimulatory, in the apical zones. These events indicate a polarity of response in which apical zones have precedence over basal zones.     

An assessment of the importance of emergent and floating-leaved macrophytes to trophic status in the Loosdrecht lakes (The Netherlands)

The potential importance of the six major emergent and floating-leaved macrophyte species in recycling of sediment phosphorus in the Loosdrecht lakes was studied. Representative plant samples were collected at the time of maximum biomass, and analysed for biomass and carbon, nitrogen and phosphorus contents. Species cover was determined by aerial photography.Total cover in the seven lakes studied ranged between 2 and 26 percent. For the four main species, biomass per unit area increased with lake trophic status. Consistent differences in C, N and P contents per unit biomass were not observed. Although cover values were small, significant amounts of C, N and P were contained in the macrophytes when compared with maximum sestonic content.Potential P loads from macrophyte decay were calculated. In Lake Loosdrecht, the P load represented 15 percent of current external P inputs. The potential importance of macrophyte decay to P recycling in the other lakes is greater.Decay of macrophyte species at the end of the growing season appears to affect autumnal nutrient and chlorophyll a levels in the water column of some lakes. The re-establishment of submerged species following lake restoration may increase the importance of this pathway in the lakes.     

Analysis of growth during light-induced hook opening in cress

Abstract. Growth in various regions of the hypocotyls of dark-grown cress seedlings before and after exposure lo continuous white light has been analysed by time-lapse photography. In the dark, growth in the hook was minimal, the upward growth of the seedling being sustained by extension of the shank, especially the uppermost zones. Following irradiation, the hook and the remainder of the hypocotyl showed dissimilar growth responses. Previously growing regions of the shank were inhibited while zones within the hook, especially the apical end of the inner (concave) side, showed marked growth stimulation. These changes in growth rates commenced within 1 h from exposure to the light stimulus and thus considerably preceded any observable changes in hook angle.     

Rain Forest Structure at Forest-Pasture Edges in Northeastern Costa Rica

Land-use change in the Sarapiquí region of Costa Rica has resulted in a fragmented forest landscape with abrupt edges between forest and pasture. Forest responses to edge effects vary widely and can significantly affect ecosystem integrity. Our objective was to examine forest structure at 20+ yr old forest-pasture edges in Sarapiquí. Three transects with 0.095-ha plots at seven distances from forest edges were established in each of six forest patches. Stem density, basal area, and aboveground biomass in trees and palms ≥ 10-cm diameter at breast height were measured in all plots. In addition, hemispherical photographs were taken to determine leaf area index, understory light availability, and percent canopy openness. Linear mixed-effects models showed significantly higher tree stem density at forest edges, relative to interiors, a pattern reflected by increased stem density, basal area, and aboveground biomass in small diameter trees (≤ 20 cm) growing near edges. No differences in total tree basal area, aboveground biomass, or hemispherical photograph-derived parameters were detected across the forest edge to interior gradient. The recruitment of small diameter trees following edge creation has contributed to the development of dense vegetation at the forest edge and has aided in the maintenance of similar tree basal area and aboveground biomass between edge and interior environments. These data reflect on the robustness of forest edges in Sarapiquí, a characteristic that will likely minimize future detrimental edge effects and promote a number of high-value environmental services in these forests.     

Assessing population size and structure for Andean Condor Vultur gryphus in Bolivia using a photographic ‘capture‐recapture’ method

The Andean Condor Vultur gryphus is a globally threatened and declining species. Problems of surveying Andean Condor populations using traditional survey methods are particularly acute in Bolivia, largely because only few roosts are known there. However, similar to other vulture species, Andean Condors aggregate at animal carcasses, and are individually recognizable due to unique morphological characteristics (size and shape of male crests and pattern of wing coloration). This provided us with an opportunity to use a capture‐recapture (‘sighting‐resighting’) modelling framework to estimate the size and structure of an Andean Condor population in Bolivia using photographs of individuals taken at observer‐established feeding stations. Between July and December 2014, 28 feeding stations were established in five different zones throughout the eastern Andean region of Bolivia, where perched and flying Andean Condors were photographed. Between one and 57 (mean = 20.2 ± 14.6 sd) Andean Condors were recorded visiting each feeding station and we were able to identify 456 different individuals, comprising 134 adult males, 40 sub‐adult males, 79 juvenile males, 80 adult females, 30 sub‐adult females and 93 juvenile females. Open population capture‐recapture models produced population estimates ranging from 52 ± 14 (se) individuals to 678 ± 269 individuals across the five zones, giving a total of 1388 ± 413 sd individuals, which is roughly 20% of the estimated Andean Condor global population. Future trials of this method need to consider explicitly knowledge of Andean Condor movements and home‐ranges, habitat preferences when selecting suitable sites as feeding stations, juvenile movements and other behaviours. Sighting‐resighting methods have considerable potential to increase the accuracy of surveys of Andean Condors and other bird species with unique individual morphological characteristics.     

Spatial and temporal changes in salt marsh distribution in the Dee estuary,NW England,determined from aerial photographs

Vegetation changes in salt marsh communities of the Dee estuary, northwest England, were analysed with a combination of remote sensing techniques using data dating back to the 1950s. The distribution of communities in 1997 was classified using Airborne Thematic Mapper data and used to develop a methodology for the analysis of black and white photographs of the marsh. These methods were then applied retrogressively to a time sequence of monochrome photographs running from 1955 to 1975. At the apex of the salt marshes on the English shore of the Dee estuary, the marsh expanded dramatically to 1975, and consisted predominantly of pioneer and low marsh vegetation types. Between 1975 and 1997, however, there was only a slight increase in salt marsh area, but with an increase in mid and high marsh vegetation, replacing pioneer marsh. In a second area of the salt marsh on the English shore, a different pattern of salt marsh expansion was observed. The area occupied by marsh continued to increase right up to 1997, with extensive pioneer vegetation suggesting a process of continuing expansion. However, the pattern of marsh colonisation appeared to be different in 1997 compared to 1975. The significance of the changes in salt marsh distribution within the Dee estuary are discussed in relation to the historical pattern of salt marsh colonisation, the importance of Spartina anglica in the process and the implications for strategic management of the estuarine resources.     

Gap-phase regeneration in a semideciduous mesophytic forest, south–eastern Brazil

The study was carried out in ten natural canopy gaps in the SantaGenebra County Reserve (22°4945S, 47°0633W)in the county of Campinas, São Paulo State, Brazil. The size and canopyopenness of the gaps were studied using hemispherical photographs. Thevegetation survey included all shrubs and trees with height 0.50m in the gaps interiors and all the individuals with PBH(perimeterat breast height) 15 cm in a 3 m surroundingborder of the gaps. The similarity among the gaps and among their surroundingareas was assessed by the Jaccard similarity index and by cluster analyzes. Thegap size varied from 20.09 to 468 m², with apredominance of small gaps. The families with the greatest species richness inthe gaps were Rutaceae, Rubiaceae and Euphorbiaceae. The species with thegreatest number of individuals in the gaps were Coffeaarabica L., Hybanthus atropurpureus (St. Hil.)Taub. and Actinostemon klotschii (Muell. Arg.) Pax, allwidely distributed in the understorey. Shade-tolerant species (late secondaryspecies) predominated in function of the predominance of small gaps. The highnumber of species found in the gaps reflects the importance of thesedisturbances in the maintenance of species diversity in the studied forest.