Genetic dissection of adaptive form and function in rapidly speciating cichlid fishes

Genes of major phenotypic effects and strong genetic correlations can facilitate adaptation, direct selective responses, and potentially lead to phenotypic convergence. However, the preponderance of this type of genetic architecture in repeatedly evolved adaptations remains unknown. Using hybrids between Haplochromis chilotes (thick‐lipped) and Pundamilia nyererei (thin‐lipped) we investigated the genetics underlying hypertrophied lips and elongated heads, traits that evolved repeatedly in cichlids. At least 25 loci of small‐to‐moderate and mainly additive effects were detected. Phenotypic variation in lip and head morphology was largely independent. Although several QTL overlapped for lip and head morphology traits, they were often of opposite effects. The distribution of effect signs suggests strong selection on lips. The fitness implications of several detected loci were demonstrated using a laboratory assay testing for the association between genotype and variation in foraging performance. The persistence of low fitness alleles in head morphology appears to be maintained through antagonistic pleiotropy/close linkage with positive‐effect lip morphology alleles. Rather than being based on few major loci with strong positive genetic correlations, our results indicate that the evolution of the Lake Victoria thick‐lipped ecomorph is the result of selection on numerous loci distributed throughout the genome.     

Changes in ventral head width, a discriminating shape factor among African cichlids, can be induced by chronic hypoxia

A massive enlargement of the gill surface proved to be an important factor in the hypoxia survival of young cichlids. Because the heads of cichlids are densely packed with structures related to both feeding and breathing, we hypothesized that the extra space needed for gill enlargement requires such large structural reorganizations that outer head shape is affected. We used a three-dimensional model to describe changes in the outer head shape of cichlids. Broods of cichlids of different phylogenetic lineages, habitats, and trophic specialization were split and raised at either 10% or 80–90% air saturation. Despite the above-mentioned differences between the species that were used, all hypoxia raised groups showed similar volume enlargements. Volume increases were most prominent in the ventral suspensorial and ventral opercular subcompartments. A relation with the enlarged gills of hypoxia raised fish is likely because the gills are mainly located in these compartments. The differences in ventral width correspond to those found in other studies comprising a wide variety of genotypic and phenotypic variations. The present study shows that such variation in the ventral width is conceivable by phenotypic plasticity alone.   © 2009 The Linnean Society of London, Biological Journal of the Linnean Society , 2009, 98 , 608–619.     

Lake Victoria fisheries: the Kenyan reality and environmental implications

Synopsis The introduction of the Nile perch into Lake Victoria has dramatically altered the fishery in that lake and contributed to the decline of the fishery for indigenous tilapias. One sector of the fishery in Lake Victoria has benefitted from the Nile perch introduction, although catches have declined in recent years. Inefficient enforcement of fisheries regulations has had a detrimental effect on indigenous species but may also have contributed to the recent decline in Nile perch catches. Fisheries development plans have tended to favour capital-intensive fisheries and to ignore small scale subsistence fisheries. A case study at Wichlum Beach on the Kenyan shores of Lake Victoria has revealed the efficiency of traditional fishing and fish drying methods as well as the high ecological costs of the practice of kiln-drying Nile perch. Forty-five tons of firewood are used per month at Wichlum Beach alone for kiln-drying perch. The increased economic viability of the fishery has attracted professionals into the industry and resulted in the development of an export-oriented trade. The Yala Swamp adjacent to Lake Victoria has been extensively drained as part of a large land reclamation scheme and more draining is planned. Increased environmental awareness in Kenya, and Kenya's membership in the Convention on Wetlands of International Importance, has resulted in a critical review of these plans.     

Mhc class II B gene evolution in East African cichlid fishes

 A distinctive feature of essential major histocompatibility complex (Mhc) loci is their polymorphism characterized by large genetic distances between alleles and long persistence times of allelic lineages. Since the lineages often span several successive speciations, we investigated the behavior of the Mhc alleles during or close to the speciation phase. We sequenced exon 2 of the class II B locus 4 from 232 East African cichlid fishes representing 32 related species. The divergence times of the (sub)species ranged from 6000 to 8.4 million years. Two types of evolutionary analysis were used to elucidate the pattern of exon 2 sequence divergence. First, phylogenetic methods were applied to reconstruct the most likely evolutionary pathways leading from the last common ancestor of the set to the extant sequences, and to assess the probable mechanisms involved in allelic diversification. Second, pairwise comparisons of sequences were carried out to detect differences seemingly incompatible with origin by nonparallel point mutations. The analysis revealed point mutations to be the most important mechanism behind allelic divergences, with recombination playing only an auxiliary part. Comparison of sequences from related species revealed evidence of random allelic (lineage) losses apparently associated with speciation. Sharing of identical alleles could be demonstrated between species that diverged 2 million years ago. The phylogeny of the exon was incongruent with that of the flanking introns, indicating either a high degree of convergent evolution at the peptide-binding region-encoding sites, or intron homogenization. Received: 6 December 1999 / Revised: 15 February 2000     

African lakes and their fishes: conservation scenarios and suggestions

Synopsis Man has been associated with a variety of lakes throughout his evolutionary history in Africa. Lakeside dwellers have a close association with and understanding of these lakes. In the past four decades, however, overexploitation, introductions of alien fishes and the possibility of oil pollution present frightening prospects of irreversible losses and massive extinction. The development of scientific understanding of the life support processes, the ecosystems and the rich communities of these lakes has been so outpaced by exploitation and manipulations that accurate predictions regarding the future are impossible. Shallow lakes are more sensitive to physico-chemical changes caused by climatic as well as agricultural and industrial development than deep lakes, but their biotae are endowed with a resilience which facilitates recovery from major depletions to population size. In contrast, the speciose endemic cichlid faunae of deep lakes are sensitive to fishing pressure, are awkward to manage and should be regarded as representing a much smaller resource than initially imagined. The clupeids of Lake Tanganyika can sustain intensive fishing, but their introduction into other natural lakes is not recommended. Enormous changes to native faunae followed the introduction of Lates niloticus to lakes Kyoga and Victoria with dramatic consequences for the fisheries, for the socio-economic status of the region and for the maintenance of biotic diversity. Extinction of almost 300 fish species is a possible further consequence of L. niloticus predation. Intensive selective fishing for L. niloticus is being initiated, but is unlikely to resolve the problem. In the time necessary to substantially reduce L. niloticus, numerous endemic fishes may suffer extinction. A viable alternative to extinction of these species is captive propagation. Conservation of fishes by captive propagation is not a common or well documented practice. To encourage the acceptance of this conservation option a theoretical scenario in which the concepts and protocols are applied to the fishes of Lake Victoria is given. The possibility of returning rescued populations to the lake at a later date, assuming L. niloticus populations have been reduced, is also discussed. It is recommended that captive propagation should be practised to conserve species and to retain the option of returning rescued taxa. Scientists are urged to seek the funding to study tropical ecosystems so that conservation and rational development may acquire a sound foundation.