Influences of temporal independence of data on modelling species distributions

Modelling species distributions has been widely used to understand present and future potential distributions of species, and can provide adaptation and mitigation information as references for conservation and management under climate change. However, various methods of data splitting to develop and validate functions of the models do not get enough attention, which may mislead the interpretation of predicted results. We used the Taiwanese endemic birds to test the influences of temporal independence of datasets on model performance and prediction. Training and testing data were considered to be independent if they were collected during different survey periods (1993–2004 and 2009–2010). The results indicated no significant differences of six model performance measures (AUC, kappa, TSS, accuracy, sensitivity, and specificity) among the combinations of training and testing datasets. Both species- and grid cell-based assessments differed significantly between predictions by the annual and pooled training data. We also found an average of 85.8% similarity for species presences and absences in different survey periods. The remaining dissimilarity was mostly caused by species observed in the late survey period but not in the early one. The method of data splitting, yielding training and testing data, is critical for resulting model species distributions. Even if similar model performance exists, different methods can lead to different species distributional maps. More attention needs to be given to this issue, especially when amplifying these models to project species distributions in a changing world.     

An evaluation of the Lost World and Vertical Displacement hypotheses in the Chimantá Massif, Venezuelan Guayana

Aim To document the occurrence of vertical displacements of vegetation in the high plateaus of the Venezuelan Guayana (tepuis) over the last c. 6000 years, and to discuss their significance for the origin of their flora, especially the endemism patterns observed in their flat summits. Two hypotheses have been proposed for the origin of the summit flora. One (the Lost World hypothesis) proposes a long history of evolution in isolation from the surrounding plains, while the other (the Vertical Displacement hypothesis) suggests that vertical movements of vegetation during the Pleistocene glacial‐interglacial cycles would have resulted in floristic mixing within the lowlands, and genetic interchange among plateau summits. Location This work has been conducted on the flat summit of the Churí‐tepui, in the Chimantá massif, at 5°15′ Lat. N and 62°01′ Long. W, around 2250 m altitude. Methods Pollen analysis and radiocarbon dating of two peat outcrops, using modern analogue technique and numerical methods for palaeoecological interpretation were used. Results The replacement of a high‐altitude plant community (a paramoid Chimantaea shrubland) by a lower elevation (< 2300 m) Stegolepis meadow, occurred about 2500 years before present (yr bp ). This vegetation change is inferred to have resulted from a regional climatic shift to higher temperature and moisture. A subsequent decrease in temperature and moisture led to the establishment of present conditions after about 1450 yr bp . Main conclusions The highland vegetation of the tepuis responded to climate shifts with vertical displacements, supporting the hypothesis of vertical mixing. However, a physiographical analysis shows that around half of the tepuis would never have been connected by lowlands. Therefore, both hypotheses are needed to explain the origins of the summit flora in the tepuis.     

Freshwater fish zoogeography in west Africa: faunal similarities between river basins

Synopsis Similarities between the freshwater fish faunas of 52 west African rivers have been investigated and three main zoogeographic regions recognized. The Sudanian region includes all rivers from Senegal to the Omo, as well as coastal basins from Ivory Coast to the Cross and the Wouri. The Upper Guinean region comprises the coastal basins from Guinea to Liberia and the Lower Guinean one, the coastal rivers of Cameroon and Gaboon. The Sudanian region can be sub-divided into a Sudanian region sensu stricto, including the Sahelo-Sudanese rivers, and the Eburneo-Ghanean region corresponding to coastal basins from the Cess (or Nipoué, Ivory Coast) to the Pra (Ghana). These delimitations give an highly significant within region faunal homogeneity, even if the effect of geographical proximity between rivers is removed. 21 to 71% of the fish species in each region are endemics. The present patterns of distribution are the result of past climatic and geological events affecting west Africa and, given this framework, the role of alternating wet and dry periods during the early Quarternary is emphasized as well as the importance of mountains as dispersal barriers. Role of recent river connections and links via lagoon is emphasized in explaining river faunal similarities within biogeographical regions.     

长江三峡库区种子植物的中国特有分布

报道了分布于长江三峡库区的中国种子植物特有属及特有植物在库区的水平与垂直分布概况,对库区的特有分布的特点也进行了简要的分析和探讨。     

Genetic diversity of indigenous rhizobial symbionts of the Lupinus mariae-josephae endemism from alkaline-limed soils within its area of distribution in Eastern Spain

The genomic diversity of a collection of 103 indigenous rhizobia isolates from Lupinus mariae-josephae (Lmj), a recently described Lupinus species endemic to alkaline-limed soils from a restricted habitat in Eastern Spain, was investigated by molecular methods. Isolates were obtained from soils of four geographic locations in the Valencia province that harbored the known Lmj plant populations. Using an M13 RAPD fingerprinting technique, 19 distinct RAPD profiles were identified. Phylogenetic analysis based on 16S rDNA and the housekeeping genes glnII, recA and atpD showed a high diversity of native Bradyrhizobium strains that were able to establish symbiosis with Lmj. All the strains grouped in a clade unrelated to strains of the B. canariense and B. japonicum lineages that establish symbioses with lupines in acid soils of the Mediterranean area. The phylogenetic tree based on concatenated glnII, recA and atpD gene sequences grouped the Lmj isolates in six different operational taxonomic units (OTUs) at the 93% similarity level. These OTUs were not associated to any specific geographical location, and their observed divergence predicted the existence of different Bradyrhizobium genomic species. In contrast, phylogenetic analysis of symbiotic genes based on nodC and nodA gene sequences, defined only two distinct clusters among the Lmj strains. These two Lmj nod gene types were largely distinct from nod genes of bradyrhizobia nodulating other Old World lupine species. The singularity and large diversity of these strains in such a small geographical area makes this an attractive system for studying the evolution and adaptation of the rhizobial symbiont to the plant host.     

Historical plant records enlighten the conservation efforts of ferns and Lycophytes’ diversity in tropical China

Historical records, e.g., herbarium vouchers, contain information about species distribution since the early days of the scientific exploration of floras until today. These data provide crucial evidence to map the biodiversity of the area of interest and most importantly enable the evaluation of the conservation effectiveness for a given group of organisms. This study aimed to explore the ferns and lycophytes’ diversity of Xishuangbanna Dai Autonomous Prefecture in tropical China with special emphasis on conservation efforts provided by the currently established protected areas (PAs). Instead of relying exclusively on current observation, the database was compiled from digitalized herbarium vouchers and publications being explored with special attention on the temporal and spatial dimensions of collecting efforts. Utilizing the indices including species richness, weighed endemism, corrected weighted endemism, and beta diversity, hotspots of ferns and lycophytes’ diversity were identified. In turn, the proportion of hotspots located outside PAs was estimated as a measure of conservation gaps in Xishuangbanna. Our results revealed a long collecting history of ferns and lycophytes in Xishuangbanna and this prefecture accumulated a considerable number of historical records covering 20.2 % of Chinese and 3.6% of global fern diversity. The accumulation of historical records showed strong parallelism to the historical events shaping modern China. The spatial distribution of ferns and lycophytes in Xishuangbanna was characterized by a concentration of species richness in southern valleys and endemism in western and northern mountains. In terms of conservation, existing PAs showed higher effectiveness in the protection of species richness, whereas lower effectiveness was observed in the protection of endemism and beta diversity. Our research provided a key reference for understanding the diversity and conservation of ferns and lycophytes in Xishuangbanna, as well as highlighting the locality for future collecting and conservation efforts.     

Reserve selection in the Succulent Karoo,South Africa: coping with high compositional turnover

The Succulent Karoo biome is home to the world's richest succulent flora. It has approximately 1954 endemic plant species, and is the only semi-arid region to qualify as a hotspot of global significance. Despite its importance, only 2% of the biome is currently protected. Based on its flora, the biome can be divided into 12 bioregions, reflecting its high compositional turnover in relation to environmental and geographical gradients. Only three of these bioregions (the Gariep Centre, the Namaqualand Rocky Hills and the Tanqua Karoo) contain National Parks, and three contain large (over 10000 ha) provincial reserves (the Gariep Centre, the Namaqualand Rocky Hills and the Little Karoo). The current reserve system does little to conserve biodiversity, with only one reserve significantly conserving Red Data Book (RDB) plant diversity. Using a RDB plant species database of 3874 records at a quarter degree scale (QDS = 15×15), we used hotspot analyses and iterative reserve selection algorithms to identify possible locations for future reserves. The hotspot analysis and iterative analyses yielded similar results for the top 11 QDS, mainly due to very high local endemism. Also because of the local endemism and the high species turnover within the biome, the real-world iterative algorithm (starting with the seven already reserved QDS) selected a very large total number of QDS (59% of the total in the biome) to conserve all RDB species. As a possible alternative to conservation planning based on QDS, we also assessed priorities at the scale of bioregions, but showed that representation at this geographic level misses important areas defined at a finer scale. We suggest that if the objective is to maximise the retention of RDB species in the landscape (to pre-empt extinction by scheduling the allocation of limited conservation resources), at least the top 5% of QDS (n=11) selected by the iterative procedure, and identified as the core conservation sequence by analysis of endemicity and threat, should be given priority for reservation. Less extensive and, in some cases, less formal conservation action can be applied to QDS later in the sequence, based on species-specific monitoring and action plans. Of the 11 core areas, four fall in a node centred on the Vanrhynsdorp Centre, two fall in a node centred on the Kamiesberg, and the remaining five are isolated. With existing reserves, the core areas capture 50% of the RDB flora in 8% of the biome.     

Distribution patterns of threatened endemic plants in Turkey: A quantitative approach for conservation

Documenting the basic patterns of biodiversity and accurately determining the priority areas are the first steps for conservation studies. Threatened species and IUCN (International Union for Conservation of Nature) Red Lists are among the widely used tools to identify protected areas. Turkey is one of the most important biodiversity centres in the world. The plant diversity of Turkey with over 30% endemic species of approximately 12000 natural vascular plant taxa is well documented through use of a Grid System. However, Turkey has suffered heavy anthropogenic effects having been a settlement for many civilisations throughout the history of humankind. Therefore, Turkey needs a quantitative evaluation of the importance of different grid squares for conserving plant diversity. This paper offers a quantitative approach for aiding the identification of priority areas for biodiversity conservation by analysing the threatened plants in each grid square in terms of endemism, risk categories and distribution characteristics. The grid squares (nearly 220 x 170 km²) were then classified within four different groups in terms of their conservation importance. This national-level information can be used for further research and decision-making processes for conservation planning.     

Species richness,endemism and conservation of Mexican gymnosperms

An analysis of the distribution patterns of 124 Mexican gymnosperm species was undertaken, in order to detect the Mexican areas with high species richness and endemism, and with this information to propose areas for conservation. Our study includes an analysis of species richness, endemism and distributional patterns of Mexican species of gymnosperms based on three different area units (states, biogeographic provinces and grid-cells of 1° × 1° latitude/longitude). The richest areas in species and endemism do not coincide; in this way, the Sierra Madre Oriental province, the state of Veracruz and a grid-cell located in the state of Oaxaca were the areas with the highest number of species, whereas the Golfo de México province, the state of Chiapas and a grid-cell located in this state were the richest areas in endemic species. A weighted endemism and corrected weighted endemism indices were calculated, and those grid-cells with high values in both indices and with high species richness were considered as hotspots; these grid-cells are mainly located in Southern and Central Mexico.