Effects of freeze–thaw on C and N release from soils below different vegetation in a montane system: a laboratory experiment

Unstable snow cover and more frequent freeze–thaw events have been predicted for montane areas in southern Norway, where stable winters are common today. These systems are important contributors to the flux of carbon (C) and nitrogen (N) to air and water. Here we quantify and compare the effects of freeze–thaw on C and N release from soils collected below Calluna, Molinia or Sphagnum. Intact organic soil cores were subjected to four different freeze–thaw regimes for four consecutive 2‐week periods: (1) slow cycling (SC) with one long freezing event during each 2‐week period, (2) fast cycling (FC) with four short freezing events during each 2‐week period, (3) permanent frost (PF) and (4) permanent thaw (PT). The freezing temperature was −5 °C and the thawing temperature was 5 °C. Before start of treatment, at the end of each 2‐week period, and during postincubation periods, carbon dioxide (CO₂) emission as well as leachable dissolved organic C (DOC), dissolved organic N (DON), ammonium (NH₄), nitrate (NO₃) and absorbance at 254 nm were measured. In soils from all three vegetations, PF increased the release of CO₂, DOC, DON and NH₄ compared with PT. SC caused some scattered effects whereas FC only resulted in some increase in NO₃ release below Molinia. Generally, the emission of CO₂ and leaching of DOC, DON and NH₄ increased in the following order: Sphagnum < Calluna < Molinia. The release of NO₃ was greatest below Calluna. Our data suggest that vegetation cover and composition seem at least as important as increased soil frost for future winter fluxes of CO₂, DOC, DON and dissolved inorganic N (DIN) from the soil to air and water. The freezing period needs to be sufficiently long to give significant effects.     

Enhanced litter input rather than changes in litter chemistry drive soil carbon and nitrogen cycles under elevated CO2: a microcosm study

Elevated CO₂ has been shown to stimulate plant productivity and change litter chemistry. These changes in substrate availability may then alter soil microbial processes and possibly lead to feedback effects on N availability. However, the strength of this feedback, and even its direction, remains unknown. Further, uncertainty remains whether sustained increases in net primary productivity will lead to increased long‐term C storage in soil. To examine how changes in litter chemistry and productivity under elevated CO₂ influence microbial activity and soil C formation, we conducted a 230‐day microcosm incubation with five levels of litter addition rate that represented 0, 0.5, 1.0, 1.4 and 1.8 × litterfall rates observed in the field for aspen stand growing under control treatments at the Aspen FACE experiment in Rhinelander, WI, USA. Litter and soil samples were collected from the corresponding field control and elevated CO₂ treatment after trees were exposed to elevated CO₂ (560 ppm) for 7 years. We found that small decreases in litter [N] under elevated CO₂ had minor effects on microbial biomass carbon, microbial biomass nitrogen and dissolved inorganic nitrogen. Increasing litter addition rates resulted in linear increase in total C and new C (C from added litter) that accumulated in whole soil as well as in the high density soil fraction (HDF), despite higher cumulative C loss by respiration. Total N retained in whole soil and in HDF also increased with litter addition rate as did accumulation of new C per unit of accumulated N. Based on our microcosm comparisons and regression models, we expected that enhanced C inputs rather than changes in litter chemistry would be the dominant factor controlling soil C levels and turnover at the current level of litter production rate (230 g C m⁻² yr⁻¹ under ambient CO₂). However, our analysis also suggests that the effects of changes in biochemistry caused by elevated CO₂ could become significant at a higher level of litter production rate, with a trend of decreasing total C in HDF, new C in whole soil, as well as total N in whole soil and HDF.     

The response of a natural phytoplankton community from the Godavari River Estuary to increasing CO2 concentration during the pre-monsoon period

This paper reports for the first time upon the effects of increasing CO₂ concentrations on a natural phytoplankton assemblage in a tropical estuary (the Godavari River Estuary in India). Two short-term (5-day) bottle experiments were conducted (with and without nutrient addition) during the pre-monsoon season when the partial pressure of CO₂ in the surface water is quite low. The results reveal that the concentrations of total chlorophyll, the phytoplankton growth rate, the concentrations of particulate organic matter, the photosynthetic oxygen evolution rates, and the total bacterial count were higher under elevated CO₂ treatments, as compared to ambient conditions (control). δ¹³C of particulate organic matter (POM) varied inversely with respect to CO₂, indicating a clear signature of higher CO₂ influx under the elevated CO₂ levels. Whereas, δ¹³C_POM in the controls indicated the existence of an active bicarbonate transport system under limited CO₂ supply. A considerable change in phytoplankton community structure was noticed, with marker pigment analysis by HPLC revealing that cyanobacteria were dominant over diatoms as CO₂ concentrations increased. A mass balance calculation indicated that insufficient nutrients (N, P and Si) might have inhibited diatom growth compared to cyanobacteria, regardless of increased CO₂ supply. The present study suggests that CO₂ concentration and nutrient supply could have significant effects on phytoplankton physiology and community composition for natural phytoplankton communities in this region. However, this work was conducted during a non-discharge period (nutrient-limited conditions) and the responses of phytoplankton to increasing CO₂ might not necessarily be the same during other seasons with high physicochemical variability. Further investigation is therefore needed.     

Identification of DNA repair and damage induced proteins from Neurospora crassa

Summary The response of Neurospora crassa to DNA damage induced by UV irradiation has been studied using two-dimensional polyacrylamide gel electrophoresis (2-D PAGE). Whole cell extracts of irradiated and untreated cultures were compared. Five polypeptides that show changes in response to DNA damage have been identified.Several mutagen sensitive strains of Neurospora were also tested for polypeptide changes on 2-D PAGE. Profiles of whole cell extracts of these mutant strains were compared to wild type. Two changes were observed in the meiotic mutant, mei-3 and one change was detected in the excision repair mutant, upr-1. Two changes were also detected in the allelic mutants, uvs-3 and nuh-4. Profiles of uvs-3 and nuh-4 revealed one polypeptide that was missing and another polypeptide which appeared to shift to a more basis position. This same shift was detected in wild type after induction by UV irradiation or heat shock.     

The Role of Snowmelt and Spring Rainfall in Inorganic Nutrient Fluxes from a Large Temperate Watershed, the Androscoggin River Basin (Maine and New Hampshire)

The importance of snowmelt and spring rainfall to water and nutrient exports from macro-scale watersheds (>1000 km²) is not well established. Data collected from the Androscoggin River watershed (Maine and New Hampshire) between February 1999 and March 2002 show that the 90-day spring melt period accounted for 39–57% of total annual discharge and is likely driven both by snowpack melting and spring rainfall. While large loads of dissolved inorganic nitrogen (DIN) are delivered to the watershed from snowmelt and rain (from 1.16× 10⁶ to 1.61× 10⁶ kg N over the study years), only one third of this N load is exported from the basin during the snowmelt period (0.40× 10⁶–0.48 × 10⁶ kg N). Despite reduced residence time and temperature limitations on biological N retention, there is a poor mass balance between DIN input to the watershed and the nitrogen exported from mouth of the river. Inferences from a geochemical hydrograph separation suggests that approximately 51–63% of the water leaving the mouth of the Androscoggin river is from these ‘new’ water sources (rain and snowmelt) while 37–49% is from DIN depleted soil and groundwater. Mixing of water from different sources, as well as nutrient retention by dams in the upper watershed, may account for the large discrepancy between DIN inputs and exports from this watershed.     

Effect of Reduced Winter Precipitation and Increased Temperature on Watershed Solute Flux, 1988–2002, Northern Michigan

Since 1987 we have studied weekly change in winter (December–April) precipitation, snowpack, snowmelt, soil water, and stream water solute flux in a small (176-ha) Northern Michigan watershed vegetated by 65–85 year-old northern hardwoods. Our primary study objective was to quantify the effect of change in winter temperature and precipitation on watershed hydrology and solute flux. During the study winter runoff was correlated with precipitation, and forest soils beneath the snowpack remained unfrozen. Winter air temperature and soil temperature beneath the snowpack increased while precipitation and snowmelt declined. Atmospheric inputs declined for H⁺, NO₃⁻, NH₄⁺, dissolved inorganic nitrogen (DIN), and SO₄²⁻. Replicated plot-level results, which could not be directly extrapolated to the watershed scale, showed 90% of atmospheric DIN input was retained in surface shallow (<15 cm deep) soils while SO₄²⁻ flux increased 70% and dissolved organic carbon (DOC) 30-fold. Most stream water base cation (C_B), HCO₃⁻, and Cl⁻ concentrations declined with increased stream water discharge, K⁺, NO₃⁻, and SO₄²⁻ remained unchanged, and DOC and dissolved organic nitrogen (DON) increased. Winter stream water solute outputs declined or were unchanged with time except for NO₃⁻ and DOC which increased. DOC and DIN outputs were correlated with the percentage of winter runoff and stream discharge that occurred when subsurface flow at the plot-level was shallow (<25 cm beneath Oi). Study results suggest that the percentage of annual runoff occurring as shallow lateral subsurface flow may be a major factor regulating solute outputs and concentrations in snowmelt-dominated ecosystems.     

Energy and dose dependence of GafChromic EBT3-V3 film across a wide energy range

AimTo determine the energy and dose dependence of GafChromic EBT3-V3 film over an energy range 0.2 mm Al HVL to 6 MV.BackgroundThe decay scheme of a brachytherapy source may be complex and the spectrum of energy can be wide. LiF TLDs are the golden standard recommended for dosimetric measures in brachytherapy, for their energy independence, but TLDs could be not available in some centres. An alternative way to perform dose measurements is to use GafChromic films, but they show energy dependence.Methods and materialsFilms have been irradiated at increasing dose with three different beams: 6 MV beam, TPR20, 10 = (0.684 ± 0.01), HVL = (2.00 ± 0.01)mmAl and HVL = (0.20 ± 0.01)mmAl. Calibration curves were generated using the same dose range (0cGy to 850cGy) for the three energies. Using the 6 MV calibration curve as reference, the film response in terms of net optical density (OD) was evaluated.ResultsThe difference in the calibration curve obtained by irradiating the film with 6 MV and 2 mm Al HVL energy beams is less than 3 %, within the calibration uncertainty, in the dose range 500-850cGy. The OD of EBT3-V3 film is significantly lower at 0.2 mmAl HVL compared to 6 MV, showing differences up to 25 %.ConclusionWithin the range 6 MV-2 mm Al HVL and dose higher than 500cGy, GafChromic EBT3-V3 films are energy independent. In this dose range, films can be calibrated in a simple geometry, using a 6 MV Linac beam, and can be used for brachytherapy sources dose measures. The use of EBT3 films can be extended to reference dosimetry in Ir-192 clinical brachytherapy.     

Diverse communities of active Bacteria and Archaea along oxygen gradients in coral reef sediments

Microbial communities inhabiting highly permeable sediments of Checker Reef in Kaneohe Bay, Hawaii, were characterized in relation to porewater geochemistry (O₂, NO₃ ⁻, NO₂ ⁻, NH₄ ⁺, phosphate). The physiologically active part of the population, assessed by sequencing cDNA libraries of 16S rRNA amplicons, was very diverse, with an estimated ribotype richness ≥1,380 in anoxic sediment. Quantitative analysis of community structure by rRNA-targeted fluorescence in situ hybridization (FISH) indicated that the archaeal population (9–18%) was dominated by marine Crenarchaeota (5–9%). Planctomycetales were the most abundant group in the oxic and interfacial habitat (17–19%) but were a minority (<5%) in anoxic reef sediment, where γ-Proteobacteria were numerically dominant (18%). Another 9–14% of the microbial benthos belonged to β-Proteobacteria, predominantly within the order Nitrosomonadales, many cultured representatives of which are NH₄ ⁺ oxidizers. The results of this study contribute to the phylogenetic characterization of benthic microbial communities that are important in organic matter degradation and nutrient recycling in coral reef ecosystems.     

Nitrogen exports at multiple-scales in a southern Chilean watershed (Patagonian Lakes district)

We evaluated nitrogen (N) export for various catchments in the San Pedro River watershed of South-central Chile (39°20′ to 40°12′S) during the dry season (February to March). We measured concentrations and export of the various N species at 16 points from the Andean headwaters to the lowland portion of the watershed: eight main nested points along the main watershed and eight secondary points on tributaries. We expected that, given a downstream increase in pastureland and decrease in native pristine forest cover, inorganic forms of N (DIN) would increase downstream, while conversely, dissolved organic nitrogen (DON) would decrease compared with concentrations in the forested headwaters. Nitrogen concentrations did not show statistically significant differences among the nested catchments. However, there were statistically significant differences in N concentrations associated with land cover among the tributaries. The results suggest that in the presence of base flow, natural landscape properties (barren land, lakes and rivers), explained most of the spatial variation in the N exports, while anthropogenic disturbance was not detectable. There was a negative relationship between DIN export and the coverage of lakes and rivers, suggesting that lakes might be acting as N traps. On the other hand, DIN, DON and total N exports were positively associated to barren land. Total nitrogen export during this 60-day dry season was less than 20 kg km⁻² and the annual export was not larger than 100 kg km⁻². This study documents the as yet pristine conditions of rivers in southern Chile.