UPTAKE OF INORGANIC NITROGEN BY CODIUM FRAGILE SUBSP. TOMENTOSOIDES (CHLOROPHYTA)1

The uptake of nitrate, nitrite and ammonium by Codium fragile subsp. tomentosoides (van Goor) Silva was measured at different combinations of temperature (6–30 C) and irradiance (0–140 μEin.m-^2. s^-1). Uptake of all three forms of N was greater at 12–24 C than at 6 and 30 C. Although uptake was stimulated by light, saturation occurred at relatively low irradiance (7–28 μEin m^-2 s^-1, depending on the N source and temperature). The Michaelis-Menten uptake constants (V_max K)varied with temperature. V_max was greatest at intermediate temperatures and K was lowest at lower temperatures. The V_maxfor NH₄⁺ was higher and the K, for NH₄⁺was lower than those for NO₃^-_- and NO₂^-_-. Codium was capable of simultaneously taking up all three forms of inorganic N although the presence of NH₄⁺ reduced the uptake of both NO₃^-_- and NO₂^-_-. The results of this study indicate that part of the ecological success of Codium in a N-limited environment may be due to its N uptake capabilities.     

SEAWEED ANATOMY AND PHOTOSYNTHETIC PERFORMANCE: THE ECOLOGICAL SIGNIFICANCE OF LIGHT GUIGES,HETEROGENEOUS ABSORPTION AND MULTIPLE SCATTER12

Light absorption by two green seaweeds with similar photophysiology but different anatomies are compared: i) Ulva lactuca var. rigida (C. Ag.) Le Jolis, an optically translucent species of two cell layers both bearing chloroplasts; and, ii) Codium fragile subsp. tomentosoides (van Goor) Silva, an optically opaque species with a colorlelss medulla surrounded by a cortex of choloroplast-bearing utriclels. Thallus absorptance (fraction of incident light absorbed) was measured for various pigment contents. Absorptance by U. lactuca was dependent on pigment concentration in an exponential manner and never exceeded 0.6, whereas absorptance by C. fragile was independent of pigment concentration and always approached a balue of 1.0. Water in the medullary tissue of C. fragile is often of the utricles. The utricles appear to be “integrating spheres” enhancing the capture of incident light, aided by the wave-guide function of the thin peripheral layer of cytoplasm and a reflector function at their base. Photosynthitic performance for U. lactuca saturates at high light intensities and attenuates rapidly with decreasing intensities. In contrast, photosynthetic performance for C. fragile saturates at low light intensities and attenuates slowly with diminishing radiation. Extrapolated diel variation in photosynthesis shows that U. lactuca's anatomy is adaptive for high light intensity environments, whereas C. fragile's anatomy is adaptive for low light intensity environments. Both seaweeds fit into the ecological category of “fugitive” species, and compete in the Long Island Sound (Atlantic Ocean) rocky intertidal for free-space. Predictions are presented for relative species abundances along a monotonic gradient of light intensity.     

The vanishing clone: karyotypic evidence for extensive intraclonal genetic variation in the peach potato aphid,Myzus persicae (Hemiptera: Aphididae)

Analysis of holocentric mitotic metaphase chromosomes of the peach‐potato aphid Myzus persicae (Sulzer) clone 33H revealed different chromosome numbers, ranging from 12 to 17 within each embryo, in contrast to the standard karyotype of this species (2n = 12). Chromosome length measurements revealed that the observed chromosomal mosaicism is the result of recurrent fragmentations of chromosomes X, 1 and 3 because of fragile sites or hot spots of recombination. Fluorescent in situ hybridization experiments showed that X chromosomes were frequently involved in recurrent fragmentations, in particular their telomeric end opposite to the nucleolar organizer region. Experiments to induce males showed that M. persicae clone 33H is obligately parthenogenetic. The reproduction by apomictic parthenogenesis, together with a high telomerase expression that stabilized the chromosomes involved in the fragmentations observed in the M. persicae clone 33H, appears to favour the stabilization of the observed chromosome instability. © 2011 The Linnean Society of London, Biological Journal of the Linnean Society, 2012, 105 , 350–358.     

Polymerase chain reaction optimization for amplification of Guanine-Cytosine rich templates using buccal cell DNA

CONTEXT:

Amplification of Guanine-Cytosine (GC) -rich sequences becomes important in screening and diagnosis of certain genetic diseases such as diseases arising due to expansion of GC-rich trinucleotide repeat regions. However, GC-rich sequences in the genome are refractory to standard polymerase chain reaction (PCR) amplification and require a special reaction conditions and/or modified PCR cycle parameters.

AIM:

Optimize a cost effective PCR assay to amplify the GC-rich DNA templates.

SETTINGS AND DESIGN:

Fragile X mental retardation gene (FMR 1) is an ideal candidate for PCR optimization as its GC content is more than 80%. Primers designed to amplify the GC rich 5’ untranslated region of the FMR 1 gene, was selected for the optimization of amplification using DNA extracted from buccal mucosal cells.

MATERIALS AND METHODS:

A simple and rapid protocol was used to extract DNA from buccal cells. PCR optimization was carried out using three methods, (a) substituting a substrate analog 7-deaza-dGTP to dGTP (b) in the presence of a single PCR additive and (c) using a combination of PCR additives. All PCR amplifications were carried out using a low-cost thermostable polymerase.

RESULTS:

Optimum PCR conditions were achieved when a combination of 1M betaine and 5% dimethyl sulfoxide (DMSO) was used.

CONCLUSIONS:

It was possible to amplify the GC rich region of FMR 1 gene with reproducibility in the presence of betaine and DMSO as additives without the use of commercially available kits for DNA extraction and the expensive thermostable polymerases.     

microRNA在脆性X综合征发病机制中的研究进展

脆性X综合征(fragile X syndrome,FXS)是最常见的遗传性认知障碍疾病,也是一种与自闭症谱系障碍(autism spectrum disorder,ASD)相关的严重的基因疾病.它主要是由于脆性X智力低下基因1(fragile X mental retardation 1,FMR1)的异常扩增及其上游Cp G岛的异常甲基化,导致其编码的脆性X智力低下蛋白(fragile X mental retardation protein,FMRP)表达减少或缺失引起的.FMRP与miRNA(micro RNA)均具有翻译抑制活性,而且FMRP在生物化学和遗传学上均与miRNA调控通路有相互作用.此外,越来越多的研究发现miRNA调控通路在FXS的发病和治疗中发挥作用.因此,本文对miRNA的功能及其与脆性X蛋白家族成员间的相互作用进行阐述,为在miRNA水平了解FXS的发病机制奠定基础.     

Homeostatic Intrinsic Plasticity Is Functionally Altered in Fmr1 KO Cortical Neurons

1. Download high-res image (131KB)
2. Download full-size image

     

Cytogenetic mapping of five YAC clones to human chromosome region 2q31 --> q32.1 in relation to the FRA2G common fragile site

In this work, five YAC clones have been mapped by fluorescent in situ hybridization (FISH) to human chromosome region 2q31 q32.1 and ordered in relation to each other and to the FRA2G common fragile site. YAC clones that span the fragile site have been identified. Moreover a deleted HOXD 13 gene has been identified on the 942D2 YAC.     

Expression of common fragile sites in two Ceboidea species: Saimiri boliviensis and Alouatta caraya (Primates: Platyrrhini)

Fragile sites are points of preferential breakage that may be involved in chromosome rearrangements. Induction of common fragile sites (c-fra) and spontaneous breakage were analyzed in two New World Monkeys species: Saimiri boliviensis (SBO) and Alouatta caraya (ACA). Spontaneous chromosome aberrations were analyzed on untreated lymphocyte cultures with Brögger''s formula (1977). SBO presented a low level of spontaneous breakage, while higher frequencies were detected in ACA in which bands 1q23; 2q13 and 11q19 were significantly affected (p < 0.01). The populational distribution of c-fra was analyzed by the Chi² test in FUdR plus caffeine treated cultures. A total of 21 c-fra was identified in SBO and 24 in ACA. Fragile sites A₁q33, B₁p21, B₄p14, C₃q23 and C₅q22 were identified in all analyzed SBO specimens. The most frequent c-fra identified in ACA specimens were 1q23, 1q31, 1q33, 2q22, 8q14, 12q31, 13q22, 14q15 and Xq22. Fragile sites A₁q31, A₁q33, B₁q14, B₃q13, B₄q21 and Xq22 identified in SBO and 1q31, 1q33, 2q22, 4q21, 6q13, 13q22 and Xq22 from ACA were the most conserved sites. A low coincidence between the location of c-fra and that of heterochromatin and breakpoints involved in euchromatic rearrangements known for these genera, was established.