Metal exchanges in the fauna-sediment system. The case of Nereis diversicolor and Scrobicularia plana in the Bou Regreg estuary (Morocco)

This study identifies the types and quantities of metals retained by Nereis diversicolor and Scrobicularia plana in a predominantly arid estuary environment.Certain abiotic parameters and a number of physiological processes linked to metabolic and reproductive functions play a decisive role in the seasonal influence of metal levels on the tissues of these organisms.Given the deposivoric diet of the organisms, the sedimentary bed would appear to be the principal source of metal accumulation.The following classification illustrates the bioaccumulation of metals: 209-1The possibility that these metals may be carried into the estuary by sewage water from the cities of Rabat and Sále should certainly not be ignored.     

Selenium in sediment and food webs of the Tapajós River basin (Brazilian Amazon) and its relation to mercury

BackgroundWe investigated Se levels along the Tapajós River basin - which is an important tributary of the Amazon River - and the possible antagonistic effect of Se in Hg availability. This is the first study to investigate Se transfer from abiotic to biotic compartments and along the food chain in aquatic ecosystems of the Amazon basin.MethodsSe concentrations were measured in superficial sediment (n = 29), plankton (n = 28) and fishes (n = 121) along two stretches of the Tapajós River basin (Tap_up/mi and Tap_low), comprising approximately 500 km with different hydrological characteristics.ResultsSe concentrations in sediment were significantly higher in the Tap_low (345−664 μg kg⁻¹) than in the Tap_up/mi (60−424 μg kg⁻¹). The seasonal flooding of the Amazon River probably helps to carry selenium-rich sediment to the Tapajós mouth (Tap_low stretch). We suggest that Se in sediment could decrease the bioavailability of Hg resulting in lower MeHg concentrations in fish, as observed in the Tap_low (45−934 μg kg⁻¹). Sediment and plankton were positively correlated in relation to their Se concentrations (r = 0.62; p = 0.001) suggesting that sediment can possibly be the main source of Se to plankton. Our data indicate Se uptake by primary consumers, as noted in phytoplankton levels. The decrease of Se concentrations along the food chain was also noteworthy.ConclusionThis work elucidates some aspects of Se biogeochemistry in the Amazon basin and shows its importance regarding Hg cycles in aquatic ecosystems.     

Ultrastructural and Biogeochemical Features of Microbiotic Soil Crusts and their Implications in a Semi-Arid Habitat

This investigation was designed to explore the relationships between lichen symbionts (phycobiont and mycobiont) and the substrate on which they grow by examining the chemical and ultrastructural features of the lichen-soil interface. These lichens form an integral part of microbiotic soil crusts. Fragments of three different lichen biotypes growing over gypsum crystals and marls were fixed and embedded in resin. The lichen-substratum interface was then examined by scanning electron microscopy with backscattered electron imaging. In situ observation, microanalytical (EDS), and FT-Raman plus infrared spectroscopy of the lichen-substratum interface indicated that different ultrastructural features of the mycobiont were related to biogeochemical processes and Ca 2+ distribution in the soil crust. Phycobionts were observed to make direct contact with the substratum and to be surrounded by a nondifferentiated thallus structure. These observations suggest that they can grow outside the thallus in the early stages of lichen development in the semi-arid conditions of their habitat. The particular ultrastructural features of the lichen thallus and of the lichen-substratum interface appear to have marked effects on runoff phenomena and ponding generation of the surface.     

Predominance of Methanolobus spp. and Methanoculleus spp. in the Archaeal Communities of Saline Gas Field Formation Fluids

The microbial communities in sulfate-rich, saline formation fluids of a natural gas reservoir in Lower Saxony, Germany were investigated to enhance the knowledge about microbial communities in potential carbon dioxide sequestration sites. This investigation of the initial state of the deep subsurface microbiota is necessary to predict their influence on the long-term stability and storage capacity of such sites. While the bacterial 16S rDNA gene library was comprised of sequences affiliating with the Firmicutes, the Alphaproteobacteria, the Gammaproteobacteria and the Thermotogales, the archaeal 16S rDNA libraries were simply dominated by two phylotypes related to the genera Methanolobus and Methanoculleus. The monitoring of the archaeal communities in different formation fluid samples by T-RFLP and Real-Time-PCR indicated that these two methanogenic genera dominated at all, whereas the proportion of the two groups varied. Thus, methylotrophic and autotrophic methanogenesis seems to be of importance in the reservoir fluids, dependent on the provided reduction equivalents and substrates and it also may influence the fate of CO₂ in the subsurface.     

Gypsum and halite associated with the cyanobacterium Entophysalis

A study has been made on stalactite‐like structures formed by the cyanobacterium (blue‐green alga) En‐tophysalis major, growing on the roof of an undercut cliff facing the lagoon of Aldabra Atoll. The cyanobacterial cells grow in a rubbery, brown, gelatinous mucilage that contains some crystals; this mucilage surrounds a central region filled partly with gas and partly with further crystals. Halite is the predominant mineral in the mucilage, and gypsum the only mineral in the inner region. There is no evidence for a direct causal relationship between cyanobacterial metabolism and mineral crystallization, but the organic mucilage may have exerted an indirect physical control. A theory is suggested to explain the deposition of gypsum and halite, which depends on loss of water from the surface of the mucilage layer, and the layer as a whole acting as a semipermeable membrane. As the water volume decreases, gypsum will be deposited first, but subsequently, with increasing evaporation, there will be a mixture of gypsum and halite and finally halite only.     

Microbial responses to a changing environment: implications for the future functioning of terrestrial ecosystems

In this review, we present a conceptual model which links plant communities and saprotrophic microbial communities through the reciprocal exchange of growth-limiting resources. We discuss the numerous ways human-induced environmental change has directly and indirectly impacted this relationship, and review microbial responses that have occurred to date. We argue that compositional shifts in saprotrophic microbial communities underlie functional responses to environmental change that have ecosystem-level implications. Drawing on a long-term, large-scale, field experiment, we illustrate how and why chronic atmospheric N deposition can alter saprotrophic communities in the soil of a wide-spread sugar maple (Acer saccharum) ecosystem in northeastern North America, resulting in the slowing of plant litter decay, the rapid accumulation of soil organic matter, and the accelerated production and loss of dissolved organic carbon (DOC). Compositional shifts in soil microbial communities, mediated by ecological interactions among soil saprotrophs, appear to lie at the biogeochemical heart of ecosystem response to environmental change.     

Flood-deposited wood debris and its contribution to heterogeneity and regeneration in a semi-arid riparian landscape

We investigated whether large woody debris (LWD) piles create nodes of environmental resources that contribute to the recovery of riparian vegetation and that also augment the heterogeneity and resilience of the riverine system. River and riparian systems are typified by a large degree of heterogeneity and complex interactions between abiotic and biotic elements. Disturbance such as floods re-distribute the resources, such as LWD, and thereby add greater complexity to the system. We examined this issue on a semi-arid savanna river where a ~100-year return interval flood in 2000 uprooted vegetation and deposited substantial LWD. We investigated the micro-environment within the newly established LWD piles and compared this with conditions at adjacent reference sites containing no LWD. We found soil nutrient concentrations to be significantly higher in LWD piles compared with the reference plots (total N +19%, available P +51%, and total C +36%). Environmental variables within LWD piles and reference sites varied with landscape position in the river–riparian landscape and with LWD pile characteristics. Observed differences were generally between piles located in the terrestrial and riparian areas as compared to piles located on the macro-channel floor. After 3 years the number and cover of woody species were significantly higher when associated with LWD piles, regardless of landscape position or pile type. We conclude that LWD piles formed after large floods act as resource nodes by accumulating fine sediments and by retaining soil nutrients and soil moisture. The subsequent influence of LWD deposition on riparian heterogeneity is discerned at several spatial scales including within and between LWD piles, across landscape positions and between channel types. LWD piles substantially influence the initial developmental of riparian vegetation as the system regenerates following large destructive floods.     

Distribution and cycling of C, N, Ca, Mg, K and P in three pristine, old-growth forests in the Cordillera de Piuchué, Chile

We assessed a number of biomass and soil parameters in order to examinerelationships among nutrient availability, forest productivity and vegetationpatterns in two old-growth forested watersheds in a pristine montane landscapeon Isla de Chiloé, Chile. We selected watersheds in both gymnosperm- andangiosperm-dominated forests and determined tree species, d.b.h. and health forall trees < 2 cm d.b.h. in plots established at 50m intervals. Soils were sampled at two depths in each plot andanalyzed for total C and N, and for exchangeable Ca, K, Mg andresin-extractableP. Allometric relationships and vegetation nutrient concentrations were used todetermine above-ground pools from the vegetation survey data. Growth rates werederived from increment core measures. Soil pools of most elements measuredappear adequate to support forest growth indefinitely. Mineralized nitrogen,which is similar in quantity to the annual demand for nitrogen from the soil isthe exception, consistent with the possibility of N limitation in two of theforest types studied. A third type, an evergreen broadleaved forest, appears torequire substantially more nitrogen than would appear to be available from netmineralization measurements. Productivity per unit of nitrogen required fromthesoil is quite high, largely as a consequence of the evergreen habit of thespecies in these forests. Compared to other temperate montane forests in theNorthern Hemisphere, nutrient pools and cycling characteristics were found tobemostly similar across forest types, in spite of considerable variation invegetation and soils.     

Nitrogen Cycling of Active Bacteria within Oligotrophic Sediment of the Mid-Atlantic Ridge Flank

Microbial ecology within oligotrophic marine sediment is poorly understood, yet is critical for understanding geochemical cycles. Here, 16S rRNA sequences from RNA and DNA inform the structure of active and total microbial communities in oligotrophic sediment on the western flank of the Mid-Atlantic Ridge. Sequences identified as Bacillariophyta chloroplast were detected within DNA, but undetectable within RNA, suggesting preservation in 5.6-million-year-old sediment. Statistical analysis revealed that RNA-based microbial populations correlated significantly with nitrogen concentrations, whereas DNA-based populations did not correspond to measured geochemical analytes. Bioenergetic calculations determined which metabolisms could yield energy in situ, and found that denitrification, nitrification, and nitrogen fixation were all favorable. A metagenome was produced from one sample, and included genes mediating nitrogen redox processes. Nitrogen respiration by active bacteria is an important metabolic strategy in North Pond sediments, and could be widespread in the oligotrophic sedimentary biosphere.     

Stoichiometric tracking of soil nutrients by a desert insect herbivore

Abstract Biogeochemistry and population biology have developed independently, with few attempts at linkage, almost none of which were mechanistically based. We hypothesize that biogeochemical cycling is linked to herbivore population dynamics through the influence of soil nutrient availability on foliar nutrient content, which constrains herbivore investment in phosphorus (P)‐rich molecules necessary for growth. We show that variation in desert soil P availability is linked to abundance of an insect herbivore (Sabinia setosa) through the influence of soil P on the C:P ratio of the host plant (Prosopis velutina). Low P availability increases C:P ratio of Prosopis leaves, leading to a decline in body %P, %RNA and abundance of Sabinia. Tight association between soil, plant and herbivore P provides the first evidence of a mechanistic pathway linking P biogeochemistry to terrestrial food webs by altering the supply of dietary P to herbivores, thus limiting their capacity for growth by constraining the production of P‐rich cellular ribosomal RNA (rRNA).