Development of secondary pine forests after pine wilt disease in western Japan

Abstract. The development of secondary Pinus densiflora (Japanese red pine) forests after pine wilt disease was studied through phytosociological analysis, estimation of forest structure before disease and size-structure, tree ring and stem analyses. Following the end of the disease, the growth of previously suppressed small oak trees was accelerated. This is quite different from the development of forests following fire, which starts with the establishment of pine seedlings. Pine wilt disease shifted the dominance of secondary forests from Pinus densiflora to Quercus serrata oak forest. In pine forests, disturbance by fire is important for forest maintenance. In contrast, disturbance by pine wilt disease leads to an acceleration of succession from pine forest to oak forest.     

Swimming performance of silver eels is severely impaired by the swim-bladder parasite Anguillicola crassus

Infection with the swim-bladder parasite Anguillicola crassus is suggested as one of the principal causes of the collapse of the European eel population. This nematode has been introduced in Europe from Asia in the 80s and parasitized in a short time Anguilla eel species in different geographical regions across the globe. The parasites drain energy due to their sanguivorous feeding and they cause mechanical damage on the swim-bladder wall. These two effects are hypothesized to impair the spawning migration of the European eel. In this study, we have investigated both effects on swimming performance. We hypothesized that parasitic sanguivorous activities - related to parasite weight - reduce swimming endurance, while mechanical damage of the swim-bladder impairs buoyancy control. Eighty eels suffering various degrees of infection were introduced in swim-tunnels and subjected to a swimming fitness test. The relation between A. crassus infection and swimming efficiency was measured for large female silver eels swimming at various speeds. Infected eels had lower cruising speeds and a higher cost of transport. Eels without parasites, but with a damaged swim-bladder showed similar effects. Almost half of the eels that contained damaged swim-bladders (43%) stopped swimming at low aerobic swimming speeds (< 0.7 m/s). Simulated migration trials in a recent related study have confirmed that eels with a high parasite level or with damaged swim-bladder show early migration failure (< 1000-km). Reduced swimming performance appears to be associated with swim-bladder dysfunction. As we found that especially silver eels have much higher infection levels than yellow eels, it is concluded that migrating silver eels with severely infected or damaged swim-bladders are unable to reach the spawning grounds.     

Recruitment of Quercus agrifolia in central California: the importance of shrub-dominated patches

Abstract. Many perennial plants strongly enhance the survival of seedlings of other species. We studied patterns of long-term recruitment of Quercus agrifolia (Coastal live oak) associated with shrub-dominated communities by counting Q. agrifolia recruits on a time sequence of historical aerial photographs and comparing recruitment among mapped patches of coastal sage scrub, chaparral, and grassland in an 1120-ha landscape. Because we could not identify new recruits in existing woodlands with aerial photographs, we studied the recruitment of Q. agrifolia in this vegetation type indirectly by comparing population size structures and the spatial relationships between shrubs and recruits among woodlands that varied in understory community type. At the landscape scale, recruitment was higher in coastal sage scrub vegetation than predicted by the extent of its coverage, commensurate with the spatial coverage of chaparral, and very low in grassland. Recruitment within woodland communities also varied considerably. In woodland communities on sheltered, north-oriented topography with understories dominated by shrubs, there were large numbers of small Q. agrifolia, and recruits were not significantly spatially associated with shrubs within plots. In woodlands with herbaceous understories there were few individuals in the small size classes, and recruits were strongly spatially associated with shrubs within plots. Woodlands with shrub-dominated understories have population structures that appear to be stable, but woodlands with herbaceous understories exhibit size structures associated with declining populations. Quercus recruitment into shrub-dominated patches corresponds with previous documentation of facilitative relationships between shrubs and oak seedlings, and suggests the occurrence of an unusual form of patch dynamics in these landscapes.     

Rosette scrub occurrence and fog availability in arid mountains of Mexico

Abstract. Large succulent leaf rosettes are a characteristic life form in many deserts. In certain areas they become the dominant life form, creating a vegetation type indicated as rosette scrub. The large number of rosette species suggests a close relationship between form and environment. Rosettes are excellent harvesters of low‐intensity rains and fogs. We propose that some rosette‐dominated formations of the Mexican mountains, namely the montane rosette scrub, occur in altitudinal belts around mountains where fog is abundant. We sampled four altitudinal gradients in mountains with different flora recording the abundance and richness of plants. At one site, the Tehuacán Valley, we also measured the quantity of fog along the gradient, below, above and in the rosette scrub for one year. We found that the abundance and richness of succulent rosette species are strongly associated with altitude, showing maximum values in the well‐defined elevational belts where the montane rosette scrub occurs. Other life forms, such as stem succulent cacti or woody shrubs, do not show this mid‐elevation pattern. The altitudinal ranges where the montane rosette scrub occurs usually coincide with areas where clouds and fog form. Our micrometeorological measurements indicate that rosette plants growing within a cloud belt can increase their water supply by 10–100% by harvesting fog. Outside these belts fog harvest is negligible. Desert rosettes constitute one of the most common fog‐harvesting growth forms.     

Clonal plants and plant species diversity in wetland ecosystems in China

Abstract. Clonal plants play important roles in maintaining wetland ecosystems in China. By analysing 108 wetland quadrats distributed throughout China, we evaluated (1) the importance of clonal growth forms in different Chinese wetlands, (2) how the abundance of clonal plants is related to climatic and geographical conditions, and (3) how plant species diversity is related to the abundance of clonal plants. Significant differences in clonal plant importance values were found between different regions of China. Clonal plants were more important in wetland ecosystems located towards the West and North and at higher elevations and, accordingly, experiencing a colder and drier climate. Plant species diversity showed a significant inverse correlation with the importance value of ‘guerilla’‐type plants in most of the wetland regions. However, we found no significant correlation between plant species diversity and importance values of ‘phalanx’‐type plants. In most Chinese wetlands, plant species diversity decreased with increasing importance of guerilla plants and also with an increase of the entire guild of clonal plants. In wetlands with low species richness, however, plant species diversity increased with increasing importance of guerilla plants and of all clonal plants together, suggesting that in these disturbed habitats clonal growth may facilitate the establishment of other, non‐clonal wetland plants.     

Vegetation-environment relations along water courses in the Nile Delta region

The present study analyses the vegetation of canals and drains in the Nile Delta in relation to environmental factors. 30 clusters were generated by the TWINSPAN technique. A DC A (DECORANA) ordination revealed a moisture gradient, and, less clearly, a salinity and a fertility gradient. The resultant clusters were assigned to seven vegetation types arranged according to moisture preference as follows: Imperata cylindrica - Desmostachya bipinnata, Phragmites australis, Panicum repens - Cynodon dactylon, Echinochloa stagninum - Polygonum salicifolium, Echinochloa stagninum, Eichhornia crassipes, and Ceratophyllum demersum-Pótame geton crispas. Their species diversity is discussed in view of the disturbance and heterogeneity hypotheses.     

Aromatic claw: A new fold with high aromatic content that evades structural prediction

We determined the NMR structure of a highly aromatic (13%) protein of unknown function, Aq1974 from Aquifex aeolicus (PDB ID: 5SYQ). The unusual sequence of this protein has a tryptophan content five times the normal (six tryptophan residues of 114 or 5.2% while the average tryptophan content is 1.0%) with the tryptophans occurring in a WXW motif. It has no detectable sequence homology with known protein structures. Although its NMR spectrum suggested that the protein was rich in β‐sheet, upon resonance assignment and solution structure determination, the protein was found to be primarily α‐helical with a small two‐stranded β‐sheet with a novel fold that we have termed an Aromatic Claw. As this fold was previously unknown and the sequence unique, we submitted the sequence to CASP10 as a target for blind structural prediction. At the end of the competition, the sequence was classified a hard template based model; the structural relationship between the template and the experimental structure was small and the predictions all failed to predict the structure. CSRosetta was found to predict the secondary structure and its packing; however, it was found that there was little correlation between CSRosetta score and the RMSD between the CSRosetta structure and the NMR determined one. This work demonstrates that even in relatively small proteins, we do not yet have the capacity to accurately predict the fold for all primary sequences. The experimental discovery of new folds helps guide the improvement of structural prediction methods.     

The vegetation of the Farasān Islands,Red Sea,Saudi Arabia

Abstract. Classification of the vegetation of the Farasān Islands using TWINSPAN technique resulted in the recognition of seven community types associated with seven different habitat types: silty runnels, palm orchards, rocky plains, rocky plateau crevices, coastal sand dunes, sand plains, and mangroves. These communities were dominated or co-dominated by 13 perennial species; 87 associate species were recorded in the study area with chamaephytes dominating the life-form spectrum. Canonical Correspondence Analysis (CCA) indicated that organic carbon, soil moisture, silt, electrical conductivity and calcium carbonate were the major edaphic gradients controlling the distribution of the plant communities on the Farasān Islands. Higher species richness was recorded in the plant communities inhabiting the palm orchards, the crevices of the rocky plateau, silty runnels, rocky plains and rocky plateau, while those of the mangrove and sand formations (dunes and plains) showed a lower species richness. Soil texture and organic matter are the main factors promoting species diversity in the more diversified habitats, while high salinity and calcium carbonate are the main factors associated with lower species diversity in the less diversified habitats of the study area.     

Gel electrophoretic studies on ribosomal proteins L7L12 and the Escherichia coli 50 s subunit

Three forms of the 50 S ribosomal subunit of Escherichia coli have been separated by agarose/acrylamide gel electrophoresis. The slowest migrating form, S-50 S, corresponded to native 50 S subunits and contained four copies of proteins $\text{L}\text{7}\text{L}\text{12}$. Removal of the four copies of this protein produced a more rapidly migrating form, M-50 S. The M-50 S form was then converted to the fastest migrating form, F-50 S, by removal of additional proteins, including L10 and L11. A one-step removal of a pentameric complex of four copies of $\text{L}\text{7}\text{L}\text{12}$ plus L10 converted the S-50 S subunit directly to the F-50 S subunit. These proteins recombined specifically with the appropriate protein-deficient 50 S subunit at 3 °C to reform the S-50 S subunit, i.e. the M-50 S subunit was converted back to the S-50 S form by the addition of purified proteins $\text{L}\text{7}\text{L}\text{12}$; and the F-50 S subunit bound the pentameric complex of $\text{L}\text{7}\text{L}\text{12}$ and L10 to form S-50 S. The binding of the pentameric complex, isolated by glycerol gradient centrifugation, supports the model that all four copies of proteins $\text{L}\text{7}\text{L}\text{12}$ are together in one part of the ribosome called the “$\text{L}\text{7}\text{L}\text{12}$ stalk”. Only the four copies of $\text{L}\text{7}\text{L}\text{12}$ were removed from the 50 S subunit in low salt (0.125 m-NH₄Cl) plus 50% ethanol at 0 °C. These ribosomes (in the M-50 S form) had less than 5% of the peptide-synthesizing activity of untreated control ribosomes as measured by a poly(U) translation system in vitro. Peptide-synthesizing activity was restored, upon addition of $\text{L}\text{7}\text{L}\text{12}$, back to the treated ribosomes to give 50 S subunits (S-50 S) with a full complement of four copies of $\text{L}\text{7}\text{L}\text{12}$. Antibody to proteins $\text{L}\text{7}\text{L}\text{12}$ bound only to the S-50 S subunits, producing four new bands separated by gel electrophoresis. The bands represented complexes of one, two, three and four antibodies bound to a 50 S subunit. This result was obtained using either 50 S subunits or 70 S tight couples and indicated that all four copies of $\text{L}\text{7}\text{L}\text{12}$ are either located at a single site in the $\text{L}\text{7}\text{L}\text{12}$ stalk or, much less likely, are divided between two symmetrical sites. Proteins $\text{L}\text{7}\text{L}\text{12}$ were not only accessible to their specific antibody but could also be removed from 70 S ribosomes and polyribosomes without causing their dissociation into subunits. The ribosomes and polyribosomes had an increased gel electrophoretic mobility which was reversed by addition of proteins $\text{L}\text{7}\text{L}\text{12}$.     

Spline Optimum Regression Method and Its Application

IIntroductionUsuallyinersareseveralIntervalsIngrowingcurvesInorganisms,suchas,thecurvesofre－productlvltyandactivity．ThereareessentialdifferencesIntheInternaldevelopinglawsonthedlf－ferentIntervals,therefore,ItIsnotacceptabletotlsesingleelementaryfunctiontofitthecurves．TofitcurvesonalltheIntervalswithsmoothnessorcontinuancebetweenIntervals,asplinefunct;onIsrequired（Robinson1983;Yangetal,1992ah）．Splineregresslonandmethodsforflitinganoptimumsplinefunctionhavelongbeenstudied（…