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1.
Benjamin C. Blum Weiwei Lin Matthew L. Lawton Qian Liu Julian Kwan Isabella Turcinovic Ryan Hekman Pingzhao Hu Andrew Emili 《Molecular & cellular proteomics : MCP》2022,21(1):100189
Metabolism is recognized as an important driver of cancer progression and other complex diseases, but global metabolite profiling remains a challenge. Protein expression profiling is often a poor proxy since existing pathway enrichment models provide an incomplete mapping between the proteome and metabolism. To overcome these gaps, we introduce multiomic metabolic enrichment network analysis (MOMENTA), an integrative multiomic data analysis framework for more accurately deducing metabolic pathway changes from proteomics data alone in a gene set analysis context by leveraging protein interaction networks to extend annotated metabolic models. We apply MOMENTA to proteomic data from diverse cancer cell lines and human tumors to demonstrate its utility at revealing variation in metabolic pathway activity across cancer types, which we verify using independent metabolomics measurements. The novel metabolic networks we uncover in breast cancer and other tumors are linked to clinical outcomes, underscoring the pathophysiological relevance of the findings. 相似文献
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Ulrike Rosenfellner Franz Zehetner Martin H. Gerzabek 《Soil & Sediment Contamination》2009,18(6):685-687
Data from eight published studies were combined to show that the influence of traffic density on Pb contents in roadside soils increases with proximity to the road. 相似文献
5.
Monte Carlo simulations and a modified Poisson–Boltzmann (MPB) theory are used to investigate the temperature dependence of the capacitance (around the potential of zero charge) of an electric double layer in the presence of surface polarization due to a dielectric boundary. Within the context of the restricted primitive model planar double layer, whose solvent dielectric constant is ε2, the cases when the electrode is an insulator (ε1 = 1), when the electrode and the electrolyte have the same permittivity (ε1 = ε2, no polarization), and when the electrode is a conductor (ε1 → ∞) are studied for the case where the electrolyte concentration is 0.1 M. The simulations reveal a capacitance anomaly, that is, a positive temperature dependence of the capacitance at low temperatures for the former two situations. The MPB theory also shows this effect for these two situations and is in qualitative or better agreement with the simulation data. In these two cases, both the simulations and theory show a dramatic increase of the diffuse layer potential in the temperature regime where capacitance anomaly occurs. However, in the latter situation, where the electrode is metallic, the capacitance always has a negative temperature derivative for the MPB theory and probably also for the simulation data. 相似文献
6.
The fieldweek associated with the 4th Asian Dendrochronological Association Conference was an excellent opportunity for education, networking, and research. The participants and group leaders worked together for five days in an area that was new to some of the group leaders and new to some of the participants which enabled us to learn about forest ecology around Kathmandu and Nagarkot, Nepal. The fieldweek was an excellent networking opportunity and the group leaders and participants bonded which strengthened international research in dendrochronology and continues to foster new research collaborations. All of the group leaders and participants had the opportunity to learn about tree-ring formation in Pinus roxburghii at 1500 masl elevation, to explore its wood anatomy, and to examine specific research questions in our field area. In the end we developed a better understanding of the stand-age structure of a stand of trees in Nagarkot, explored the erosion history from exposed roots, and investigated tree health issues on closely related sites. We found that P. roxburghii poses some dating issues with false and micro rings at this elevation, but we were still able to develop a tree-ring chronology from this species and make preliminary assessments of stand dynamics and health. 相似文献
7.
A M O'Brien C O'Fágáin P F Nielsen K G Welinder 《Biotechnology and bioengineering》2001,76(4):277-284
The bifunctional compound, ethylene-glycol bis(N-hydroxysuccinimidylsuccinate) (EGNHS), stabilizes horseradish peroxidase C (HRP) by reaction with the enzyme's lysine residues. In this study we compare native and modified HRP by proteolytic fragmentation, peptide sequencing, and mass spectroscopy, and identify the sites of modification. Most significantly, EGNHS is shown to form a crosslink between Lys232 and Lys241 of HRP and modifies Lys174 without formation of a crosslink. These findings are in agreement with the lysine side-chain reactivities predicted from the surface accessibility of the amino groups, and the maximal span of 16 A of the EGNHS crosslinker. 相似文献
8.
Distribution of different forms of Zn in 16 acid alluvial rice growing soils of West Bengal (India) and their transformation
on submergence were studied. The results showed that more than 84% of total Zn occurred in the relatively inactive clay lattice-bound
form while a smaller fractionviz. 1.1, 1.6, 11.1 and 2.0 per cent of the total occurred as water-soluble plus exchangeable, organic complexed, amorphous sesquioxide-bound
and crystalline sesquioxide bound forms, respectively. All these four Zn forms showed significant negative correlations with
soil pH (r=−0.48**, −0.39*, −0.61** and −0.67**, respectively), while the latter two Zn forms showed significant positive correlations with Fe2O3 (0.68** and 0.88***) and Al2O3 (0.89*** and 0.75***) content of the soils. The different Zn forms were found to have positive and significant correlations amongst each other,
suggesting the existence of a dynamic equilibrium of these forms in soil.
Submergence caused an increase in the amorphous sesquioxide-bound form of Zn and a decrease in each of the other three forms.
The magnitude of such decreases in water-soluble plus exchangeable and crystalline sesquioxide-bound forms was found to be
correlated negatively with initial pH values of the soils and positively with the increase in the amorphous sesquioxide-bound
form, indicating their adsorption on the surface of the freshly formed hydrated oxides of Fe, which view was supported by
the existence of significant positive correlation between the increase in the amorphous sesquioxide-bound form of Zn and that
in AlCl3-extractable iron. The existence of a positive correlation between the decrease in crystalline sesquioxide-bound Zn and that
in Fe2O3 content in soil suggested that on waterlogging the soil Zn occluded in the cry talline sesquioxide was released as a result
of reduction of Fe2O3. 相似文献
9.
Model of ammonia volatilization from calcareous soils 总被引:2,自引:0,他引:2
A quantitative model of ammonia volatilization from the calcareous soil uppermost 1-cm layer was developed and tested. The
model accounts for the following processes: ammonium-ammonia equilibration in the soil solution, cation exchange between calcium
and ammonium which results in ammonium distribution between soil liquid and solid phases, nitrification of dissolved ammonium,
distribution of ammonia between liquid and gaseous phases and diffusion of gaseous ammonia in the soil air.
The combined effect of various characteristics such as soil pH, cation exchange capacity, water capacity and nitrification
rate on ammonia losses from various soil types have been studied. The model was validated against experimental results of
ammonia losses from different soils for its use as a predicting tool.
The model shows that most of ammonia losses can be explained by the interactive effect of high soil pH and low cation exchange
capacity. Computations show increased ammonia volatilization with decreasing soil water capacity. Increasing fertilizer application
rate has a small effect on percentage of ammonia losses. Increased nitrification rate and shorter “lag” period of nitrification
reduce ammonia losses considerably. Good agreement was obtained between model calculations and experimental results of ammonia
volatilization from 13 soils. 相似文献
10.
For three acid soils from Santa Catarina, Brazil, lime application and time of incubation with lime had little effect on the
adsorption of added phosphorus. In two soils with high contents of exchangeable aluminium, solution P and isotopically exchangeable
P were decreased by incubating with lime for 1 month: phosphorus was probably adsorbing on freshly precipitated aluminium
hydrous oxides. In one soil with less exchangeable aluminium, P in solution was increased by liming. After 23 months lime
increased solution and exchangeable P possibly due to crystallization of aluminium hydrous oxides reducing the number of sites
for P adsorption. All these changes were however small.
In a pot experiment, lime and phosphorus markedly increased barley shoot and root dry matter and P uptake. Although liming
reduced P availability measured by solution P, isotopically exchangeable P and resin extractable P, it increased phosphorus
uptake by reducing aluminium toxicity and promoting better root growth. The soil aluminium saturation was reduced by liming,
but the concentration of aluminium in roots changed only slightly. The roots accumulated aluminium without apparently being
damaged. 相似文献