Evolution of amniote dentine apposition rates

In amniotes, daily rates of dentine formation in non-ever-growing teeth range from less than 1 to over 25 μm per day. The latter value has been suggested to represent the upper limit of odontoblast activity in non-ever-growing teeth, a hypothesis supported by the lack of scaling between dentine apposition rates and body mass in Dinosauria. To determine the correlates and potential controls of dentine apposition rate, we assembled a dataset of apposition rates, metabolic rates and body masses for ca 80 amniote taxa of diverse ecologies and diets. We used phylogenetic regression to test for scaling relationships and reconstruct ancestral states of daily dentine apposition across Amniota. We find no relationship between body mass and daily dentine apposition rate (DDAR) for non-ever-growing teeth in Amniota as a whole or within major clades. Metabolic rate, the number of tooth generations, diet and habitat also do not predict or correspond with DDARs. Similar DDARs are found in large terrestrial mammals, dinosaurs and marine reptiles, whereas primates, cetaceans and some smaller marine reptiles independently evolved exceptionally slow rates. Life-history factors may explain the evolution of dentine apposition rates, which evolved rapidly at the origin of major clades.     

Evaluating phylogenetic informativeness and data-type usage for new protein-coding genes across Vertebrata

As a resource for vertebrate phylogenetics, we developed 75 new protein-coding genes using a combination of expressed sequence tags (ESTs) available in Genbank, and targeted amplification of complementary DNA (cDNA). In addition, we performed three additional analyses in order to assess the utility of our approach. First, we profiled the phylogenetic informativeness of these new markers using the online program PhyDesign. Next, we compared the utility of four different data-types used in phylogenetics: nucleotides (NUCL), amino acids (AA), 1st and 2nd codon positions only (N12), and modified sequences to account for codon degeneracy (DEGEN1; Regier et al., 2010). Lastly, we use these new markers to construct a vertebrate phylogeny and address the uncertain relationship between higher-level mammal groups: monotremes, marsupials, and placentals. Our results show that phylogenetic informativeness of the 75 new markers varies, both in the amount of phylogenetic signal and optimal timescale. When comparing the four data-types, we find that the NUCL data-type, due to the high level of phylogenetic signal, performs the best across all divergence times. The remaining three data-types (AA, N12, DEGEN1) are less subject to homoplasy, but have greatly reduced levels of phylogenetic signal relative to NUCL. Our phylogenetic inference supports the Theria hypothesis of mammalian relationships, with marsupials and placentals being sister groups.     

An evaluation of French amniote diversity through the Pennsylvanian-Cisuralian boundary

Amniotes are rare in Late Carboniferous strata, especially in Europe, and despite a global diversification. They are generally more common in Lower Permian deposits. The French record around the Pennsylvanian-Cisuralian boundary is therefore re-examined. Each basin which yielded amniote remains is provided with general data on its sedimentology, stratigraphy, dating, and palaeontological content. Seven specimens are reported, of which five are synapsids and two are reptiles, each of them being a holotype. Their respective age is reassessed. The use of the regional Stephanian and Autunian stages is discussed, but their traditional sense is retained. There is currently no amniote in the Stephanian sensu stricto (= Early Gzhelian) of France. The Stephanian-Autunian Transitional Zone (= Late Gzhelian) contains the unique amniote Stereorachis blanziacensis. The Autunian sensu stricto (= Asselian) contains five, Stereorachis dominans, Haptodus baylei, Callibrachion gaudryi, Belebey augustodunensis, and Aphelosaurus lutevensis. Finally, Neosaurus cynodus can be assigned either to the Transitional Zone or to the Autunian sensu stricto. The amniote diversity increases through the Pennsylvanian-Cisuralian boundary. Despite the low number of specimens, the French record is representative of the global evolution of amniotes.     

A reevaluation of early amniote phylogeny

A new phylogenetic analysis of early amniotes based on 124 characters and 13 taxa (including three outgroups) indicates that synapsids are the sister-group of all other known amniotes. The sister-group of Synapsida is Sauropsida, including Mesosauridae and Reptilia as its two main subdivisions. Reptilia is divided into Parareptilia and Eureptilia. Parareptilia includes Testudines and its fossil relatives (Procolophonidae, Pareiasauria and Millerettidae), while Eureptilia includes Diapsida and its fossil relatives (Pakothyris and Captorhinidae). Parts of the phylogeny are robust, such as the sister-group relationship between procolophonids and testudines, and between pareiasaurs and the testudinomorphs (the clade including procolophonids and testudines). Other parts of the new tree are not so firmly established, such as the position of mesosaurs as the sister-group of reptiles. The new phylogeny indicates that three major clades of amniotes extend from the present to the Palaeozoic. These three clades are the Synapsida (including Mammalia), Parareptilia (including Testudines), and Eureptilia (including Sauria). In addition, the Procolophonidae, a group of Triassic parareptiles, are the sister-group of Testudines.     

Salamander-like development in a seymouriamorph revealed by palaeohistology

The amniotes generally lay eggs on land and are thereby differentiated from lissamphibians (salamanders, frogs and caecilians) by their developmental pattern. Although a number of 330-300-Myr old fossils are regarded as early tetrapods placed close to amniotes on the basis of anatomical data, we still do not know whether their developmental pattern was more similar to those of lissamphibians or amniotes. Here we report palaeohistological and skeletochronological evidence supporting a salamander-like development in the seymouriamorph Discosauriscus. Its long-bone growth pattern, slow diaphyseal growth rate and delayed sexual maturity (at more than 10 years old) are more comparable with growth features of extant salamanders rather than extant amniotes, even though they are mostly hypothesized to be phylogenetically closer to living amniotes than salamanders.     

The mitochondrial DNA molecule of the hagfish (myxine glutinosa) and vertebrate phylogeny

The vertebrates are traditionally classified into two distinct groups, Agnatha (jawless vertebrates) and Gnathostomata (jawed vertebrates). Extant agnathans are represented by hagfishes (Myxiniformes) and lampreys (Petromyzontiformes), frequently grouped together within the Cyclostomata. Whereas the recognition of the Gnathostomata as a clade is commonly acknowledged, a consensus has not been reached regarding whether or not Cyclostomata represents a clade. In the present study we have used newly established sequences of the protein-coding genes of the mitochondrial DNA molecule of the hagfish to explore agnathan and gnathostome relationships. The phylogenetic analysis of Pisces, using echinoderms as outgroup, placed the hagfish as a sister group of Vertebrata sensu stricto, i.e., the lamprey and the gnathostomes. The phylogenetic analysis of the Gnathostomata identified a basal divergence between gnathostome fishes and a branch leading to birds and mammals, i.e., between ``Anamnia' and Amniota. The lungfish has a basal position among gnathostome fishes with the teleosts as the most recently evolving lineage. The findings portray a hitherto unrecognized polarity in the evolution of bony fishes. The presently established relationships are incompatible with previous molecular studies. Received: 15 August 1997 / Accepted: 1 October 1997     

Evolution of posture in amniotes–Diving into the trabecular architecture of the femoral head

Extant amniotes show remarkable postural diversity. Broadly speaking, limbs with erect (strongly adducted, more vertically oriented) posture are found in mammals that are particularly heavy (graviportal) or show good running skills (cursorial), while crouched (highly flexed) limbs are found in taxa with more generalized locomotion. In Reptilia, crocodylians have a “semi-erect” (somewhat adducted) posture, birds have more crouched limbs and lepidosaurs have sprawling (well-abducted) limbs. Both synapsids and reptiles underwent a postural transition from sprawling to more erect limbs during the Mesozoic Era. In Reptilia, this postural change is prominent among archosauriforms in the Triassic Period. However, limb posture in many key Triassic taxa remains poorly known. In Synapsida, the chronology of this transition is less clear, and competing hypotheses exist. On land, the limb bones are subject to various stresses related to body support that partly shape their external and internal morphology. Indeed, bone trabeculae (lattice-like bony struts that form the spongy bone tissue) tend to orient themselves along lines of force. Here, we study the link between femoral posture and the femoral trabecular architecture using phylogenetic generalized least squares. We show that microanatomical parameters measured on bone cubes extracted from the femoral head of a sample of amniote femora depend strongly on body mass, but not on femoral posture or lifestyle. We reconstruct ancestral states of femoral posture and various microanatomical parameters to study the “sprawling-to-erect” transition in reptiles and synapsids, and obtain conflicting results. We tentatively infer femoral posture in several hypothetical ancestors using phylogenetic flexible discriminant analysis from maximum likelihood estimates of the microanatomical parameters. In general, the trabecular network of the femoral head is not a good indicator of femoral posture. However, ancestral state reconstruction methods hold great promise for advancing our understanding of the evolution of posture in amniotes.     

A multivariate taxonomic analysis of the Late Carboniferous vertebrate ichnofauna of Alveley, southern Shropshire, England

A diverse Late Carboniferous (Westphalian D; Moscovian) vertebrate ichnofaunal assemblage from the Alveley Member (Salop Formation, Warwickshire Group) of Alveley, southern Shropshire, UK, is a significant example of an early, transitional tetrapod community. Positive tetrapod footprint casts (convex hyporeliefs) within fine- and medium-grained sandstone red-beds were formed subaqueously in an alluvial floodplain setting. A statistical analysis of this material, the first using multivariate techniques on Late Palaeozoic trackways, has been undertaken to determine the ichnospecific diversity and morphological variation within the ichno-assemblage. Nine ichnotaxa have been identified, following a study of more than 200 trackways. These include the amniote ichnogenera Dimetropus Romer and Price, 1940, Ichniotherium Pohlig, 1885 and Hyloidichnus Gilmore, 1927, but there is a dominance of trackways of the ichnogenus Limnopus Marsh, 1894, which represent stem-lissamphibian 'temnospondyls'. Following statistical analysis, the ichnogenera Limnopus and Batrachichnus are subsumed as ichnosubgenera under the senior available name Limnopus . The Alveley ichnofaunal assemblage provides significant range extensions for a number of amniote and stem-lissamphibian trackmakers from the latest Carboniferous or Permian down into the mid-Late Carboniferous. It also marks a key transitional stage in the evolution of tetrapod communities, from the 'amphibian' grade assemblages of the Carboniferous to the more terrestrial, amniote-dominated communities of the Early Permian.