Shade tree cover criteria for non-point source pollution control in the Rainforest Alliance coffee certification program: A snapshot assessment of Costa Rica's Tarrazú coffee region

Management of non-point source pollution is of great importance in the context of coffee agriculture, as this land use often coincides with headwater streams that influence water quality at the basin scale. Sustainability certification programs, such as the Rainforest Alliance (RA), provide management guidelines that promote non-point source pollution control in coffee. One of these practices is the maintenance of shade trees within farms, required by RA at a minimum of 40% shade tree cover. Here we assess the effectiveness of this practice in Tarrazú, a high elevation coffee growing region in Costa Rica. We monitored indicators of non-point source pollution in streams with both high and low shade tree cover. Streams with High Shade Tree Cover (HSTC, N = 5 subwatersheds) had 35–55% cover, approximating or exceeding the RA recommendation of at least 40%; and streams with Low Shade Tree Cover (LSTC, N = 5 subwatersheds), had 18–31% cover. We monitored the ten study streams during the dry (April & December), transition (July), and peak (October) rainfall seasons of 2013, and compared responses using t-tests. We found support for the effectiveness of shade tree cover in controlling non-point source pollution: HSTC streams had significantly (p = 0.042) lower mean annual turbidity and significantly (p = 0.004) lower turbidity during the transition season. HSTC streams also had significantly (p = 0.05) lower conductivity values during the transition period, although this trend was weaker through the year. Subwatersheds with HSTC streams were characterized by a higher percentage of RA-certified coffee than LSTC streams. Our study provides evidence of the benefits of RA shade tree cover criteria for managing water quality within high elevation tropical agro-ecosystems, especially if implemented at the watershed scale. These results contribute to our understanding of the role of agroforestry certification on tropical ecosystem conservation, and are the first account of the effectiveness of a specific coffee certification guideline on non-point source pollution control.     

Synthesis and evaluation of novel substituted 1,2,3-triazolyldihydroquinolines as promising antitubercular agents

A series of novel substituted 1,2,3-triazolyldihydroquinolines 6a–o was designed and synthesized from 2-acetylthiophene in five-step reaction sequence involving modified Boltzmann-Rahtz reaction of β-Enaminone; Vilsmeier-Haack chloroformylation using DMF/POCl₃; Ohira-Bestmann homologation of aldehyde to alkyne as key steps. The reaction of alkyne 4 with various aryl azides in the presence of copper sulfate and sodium ascorbate resulted desired new 1,2,3-triazolyldihydroquinolines 6a–o in excellent yields. In vitro screening of new compounds for anti-mycobacterial activity against Mycobacterium tuberculosis H37Rv (Mtb), resulted in three derivatives 6a (MIC:1.56?µg/mL) and 6d, 6l (MIC:3.12?µg/mL) as promising antitubercular agents with lower cytotoxicity profiles.     

Synthetic approaches to the 2010–2014 new agrochemicals

In this review, the synthesis of 30 agrochemicals that received an international standardization organization (ISO) name during the last five years (January 2010 to December 2014) is described. The aim is to showcase the range and scope of chemistries used to discover or produce the latest active ingredients addressing the crop protection industry’s needs.     

A Combined Hydroxylation of 3‐Cyanopyridine to 3‐Cyano‐6‐hydroxypyridine and 6‐Hydroxynicotinic Acid by Resting Cells of Comamonas testosteroni JA1 Grown on Nicotinic Acid

A strain of Comamonas testosteroni JA1 known for its capacity to hydroxylate 3‐cyanopyridine to 3‐cyano‐6‐hydroxypyridine was found to be also capable to hydroxylate nicotinic acid at a higher rate. In the course of the induced cultivation the forming 6‐hydroxynicotinic acid was degraded either slightly, in the presence of nicotinic acid in the medium, or faster, in the absence of nicotinic acid. In a combined process of hydroxylation of nicotinic acid by growing culture and hydroxylation of 3‐cyanopyridine by resting cells of Comamonas testosteroni JA1, not only an additional amount of 50.38 g of solid 6‐hydroxynicotinic acid was produced from 1 L of cultivation broth with a 99.97 % molar conversion yield, but also the yield of 3‐cyano‐6‐hydroxypyridine produced was more than doubled. This can be compared to that of the resting cells from the induced cultivation broth where within 8 h an amount of 5.77 g of solid 3‐cyano‐6‐hydroxypyridine was produced by resting cells from 1 L of the cultivation broth. This also was superior to 4.39 g/L of cultivation broth of resting cells reported in the literature.     

Synthesis and surface-active properties of a new class of surfactants derived from D-gluconic acid

Novel sugar-based surfactants were synthesized starting from D-gluconolactone. Three different functional groups were used to link the sugar moiety and the hydrophobic part. The physico-chemical properties for the use as adjuvant for pesticidal formulations of one of these compounds were evaluated and compared.     

Occurrence and distribution of organochlorine pesticide residue levels in water,sediment and aquatic weeds in the Nyando River catchment,Lake Victoria,Kenya

Samples of water, sediments and aquatic weeds were collected from 26 sites in the Nyando River catchment of the Lake Victoria basin in 2005–2006. The objective was to investigate levels of organochlorine pesticides that have either been banned or are restricted for use in Kenya. The pesticides investigated were lindane, aldrin, endosulfan, endrin, dieldrin, DDT, heptachlor and methoxychlor. These pesticides had previously found wide applications in public health and agriculture in Kenya for control of disease vectors and crop pests respectively. Results showed that mean concentrations were highest for methoxychlor (8.817 ± 0.020?µg l^?1) in water, sediments (92.893 ± 3.039 µg kg^?1), and weeds (39.641 ± 3.045?µg kg^?1), the weeds also tended to accumulate aldrin (15.519 ± 3.756?µg kg^?1). The results show that the pesticides are still in use and are detected in the catchment. Stringent management and public awareness measures are required to enforce the ban on the organochlorine pesticides in order to safeguard the environment and ecosystems of Lake Victoria.     

Synthesis and Fungicidal Activities of New 1,2,4‐Triazolo[1,5‐a]pyrimidines

A series of new acetohydrazone‐containing 1,2,4‐triazolo[1,5‐a]pyrimidine derivatives were designed and synthesized for the purpose of searching for novel agrochemicals with higher fungicidal activity. Their in vitro fungicidal activities against Rhizoctonia solani were evaluated, and the most promising compound, 2‐[(5,7‐dimethyl[1,2,4]triazolo[1,5‐a]pyrimidin‐2‐yl)sulfanyl]‐2′‐[(2‐hydroxyphenyl)methylidene]acetohydrazide ( 2‐17 ), showed a lower EC₅₀ value (5.34 μg ml^?1) than that of commercial carbendazim (EC₅₀=7.62 μg ml^?1). Additionally, compound 2‐17 was also found to display broad‐spectrum fungicidal activities, and its EC₅₀ value (4.56 μg ml^?1) against Botrytis cinereapers was very similar to that of carbendazim. Qualitative structure–activity relationships (QSARs) of the synthesized compounds were also discussed.     

Seasonal prevalence and susceptibility to agrochemicals of Tyrophagus similis (Acari: Acaridae) in spinach buds and agricultural soil under greenhouse conditions

Seasonal prevalence of Tyrophagus similis was investigated from 1997 to 1998 in two spinach greenhouses in central Japan. Susceptibility of T. similis to agrochemicals was also tested in the laboratory. Tyrophagus similis density in the soil was low during the high temperature period from May to August. The density rapidly increased in late autumn and remained at a high level during the cool season from December to February. The number further increased in April and then rapidly decreased in May. The high temperatures in the greenhouses from spring to early autumn are considered the main causes of population decrease. Mites on spinach buds increased the number after those on and in the soil increased. Mites attacked spinach buds mostly in late autumn and early spring. Dichlorvos did not reduce the number of mites in either greenhouse even though it was highly toxic under laboratory condition. This discrepancy suggests that the mites in both the soil and spinach buds had little direct contact with the chemicals. These data suggest that once crop damage by mites is detected, it is usually too late to use chemicals, and that mites that live in the buds are protected from agrochemicals. This revised version was published online in July 2006 with corrections to the Cover Date.     

Use of endophytes as biocontrol agents

Plant diseases, caused by various microorganisms, including viruses, bacteria, fungi, protozoa and nematodes, affect agricultural practices and result in significant crop losses. Fungal pathogens are the major cause of plant diseases and infect most plants. Agrochemicals play a significant role in plant disease management to ensure a sustainable and productive agricultural system. However, the intensive use of chemicals has adverse effects on humans and ecosystem functioning and also reduces agricultural sustainability. A sustainable agriculture is achieved through reduction or elimination of fertilizers and agrochemicals, resulting in minimal impact to the environment. Recently, the use of antagonistic endophytes as biocontrol agents is drawing special attention as an attractive option for management of some plant diseases, resulting in minimal impact to the environment. Endophytes that resides asymptomatically within a plant, have the potential to provide a source of candidate strains for potential biocontrol applications. This review addresses biocontrol methods using endophytic fungi such as Colletotrichum, Cladosporium, Fusarium, Pestalotiopsis and Trichoderma species as an attractive option for management of some plant diseases. Potential endophytes are screened in vitro and in vivo to test their antagonistic actions by different mechanisms, including mycoparasitism, production of lytic enzymes and/or antibiotics and induction of plant defenses. Currently, efforts are being made to commercialize these biocontrol agents. A continued research pipeline consisting of screening, in vitro and in vivo testing, biomass production and commercialization of endophytes as biocontrol agents may contribute to sustainable agriculture.     

Impact of commonly used agrochemicals on bacterial diversity in cultivated soils

The effects of three selected agrochemicals on bacterial diversity in cultivated soil have been studied. The selected agrochemicals are Cerox (an insecticide), Ceresate and Paraquat (both herbicides). The effect on bacterial population was studied by looking at the total heterotrophic bacteria presence and the effect of the agrochemicals on some selected soil microbes. The soil type used was loamy with pH of 6.0–7.0. The soil was placed in opaque pots and bambara bean (Vigna subterranean) seeds cultivated in them. The agrochemicals were applied two weeks after germination of seeds at concentrations based on manufacturer’s recommendation. Plant growth was assessed by weekly measurement of plant height, foliage appearance and number of nodules formed after one month. The results indicated that the diversity index (Di) among the bacteria populations in untreated soil and that of Cerox-treated soils were high with mean diversity index above 0.95. Mean Di for Ceresate-treated soil was 0.88, and that for Paraquattreated soil was 0.85 indicating low bacterial populations in these treatment-type soils. The study also showed that application of the agrochemicals caused reduction in the number of total heterotrophic bacteria population sizes in the soil. Ceresate caused 82.50% reduction in bacteria number from a mean of 40 × 10⁵ cfu g⁻¹ of soil sample to 70 × 10⁴ cfu g⁻¹. Paraquat-treated soil showed 92.86% reduction, from a mean of 56 × 10⁵ cfu g⁻¹ to 40 × 10⁴ cfu g⁻¹. Application of Cerox to the soil did not have any remarkable reduction in bacterial population number. Total viable cell count studies using Congo red yeast-extract mannitol agar indicated reduction in the number of Rhizobium spp. after application of the agrochemicals. Mean number of Rhizobium population numbers per gram of soil was 180 × 10⁴ for the untreated soil. Cerox-treated soil recorded mean number of 138 × 10⁴ rhizobial cfu g⁻¹ of soil, a 23.33% reduction. Ceresate- and Paraquat-treated soils recorded 20 × 10⁴ and 12 × 10⁴ cfu g⁻¹ of soil, respectively, representing 88.89% and 93.33% reduction in Rhizobium population numbers. Correspondingly, the mean number of nodules per plant was 44 for the growth in untreated soil, 30 for the plant in the Cerox-treated soil, 8 for the plant in Paraquat-treated soil and 3 for the plant in Ceresate-treated soil. The study has confirmed detrimental effect of insecticide on bacterial populations in the soil. Total heterotrophic counts, rhizobial counts as well as the number of nodules of all samples taken from the chemically treated soils were all low as compared to values obtained for the untreated soil. However, the effect of the insecticide was minimal in all cases as compared to the effects of the herbicides on the soil fauna. Indiscriminate use of agrochemicals on farms can therefore affect soil flora and subsequently food production.