Conformational change of a unique sequence in a fungal galectin from Agrocybe cylindracea controls glycan ligand-binding specificity

A fungal galectin from Agrocybe cylindracea (ACG) exhibits broad binding specificity for β-galactose–containing glycans. We determined the crystal structures of wild-type ACG and the N46A mutant, with and without glycan ligands. From these structures and a saccharide-binding analysis of the N46A mutant, we revealed that a conformational change of a unique insertion sequence containing Asn46 provides two binding modes for ACG, and thereby confers broad binding specificity. We propose that the unique sequence provides these two distinct glycan-binding modes by an induced-fit mechanism.     

A synopsis of the genus Ethmia Hübner in Costa Rica: biology,distribution, and description of 22 new species (Lepidoptera,Gelechioidea, Depressariidae,Ethmiinae), with emphasis on the 42 species known from área de Conservación Guanacaste

We discuss 45 Costa Rican species of Ethmia Hübner, 1819, including 23 previously described: Ethmia delliella (Fernald), Ethmia bittenella (Busck), Ethmia festiva Busck, Ethmia scythropa Walsingham, Ethmia perpulchra Walsingham, Ethmia terpnota Walsingham, Ethmia elutella Busck, Ethmia janzeni Powell, Ethmia ungulatella Busck, Ethmia exornata (Zeller), Ethmia phylacis Walsingham, Ethmia mnesicosma Meyrick, Ethmia chemsaki Powell, Ethmia baliostola Walsingham, Ethmia duckworthi Powell, Ethmia sandra Powell, Ethmia nigritaenia Powell, Ethmia catapeltica Meyrick, Ethmia lichyi Powell, Ethmia transversella Busck, Ethmia similatella Busck, Ethmia hammella Busck, Ethmia linda Busck, and 22 new species: Ethmia blaineorum, Ethmia millerorum, Ethmia dianemillerae, Ethmia adrianforsythi, Ethmia stephenrumseyi, Ethmia berndkerni, Ethmia dimauraorum, Ethmia billalleni, Ethmia ehakernae, Ethmia helenmillerae, Ethmia johnpringlei, Ethmia laphamorum, Ethmia petersterlingi, Ethmia lesliesaulae, Ethmia turnerorum, Ethmia normgershenzi, Ethmia nicholsonorum, Ethmia hendersonorum, Ethmia randyjonesi, Ethmia randycurtisi, Ethmia miriamschulmanae and Ethmia tilneyorum. We illustrate all species and their male and female genitalia, along with distribution maps of Costa Rican localities. Immature stages are illustrated for 11 species, and food plants are listed when known. Gesneriaceae is added as a new food plant family record for Ethmia. CO1 nucleotide sequences (“DNA barcodes”) were obtained for 41 of the species.     

Genetic variants associated with primary open angle glaucoma in Indian population

Glaucoma is a very common disorder of the eye wherein the disturbance of the structural or functional integrity of the optic nerve causes characteristic atrophic changes in the optic nerve, which may lead to specific visual field defects over time. Primary open angle glaucoma (POAG) is most frequent among the three principle glaucoma subtypes. With well-established role of genes like Myocilin (MYOC), Optineurin (OPTN) and WD repeat Domain 36, (WDR36), at least 29 genetic loci have been found till date to be linked to POAG. Moreover, association studies have found 66 loci with 76 genes associated to POAG till date with conflicting results. This particular study is to summarize the current knowledge regarding the change in glaucoma prevalence worldwide and in India from 1993 onwards and compiles all the studied genes that are involved in POAG pathogenesis in Indian population.     

A food plant specialist in Sparganothini: A new genus and species from Costa Rica (Lepidoptera,Tortricidae)

Sparganocosma docsturnerorum Brown, new genus and new species, is described and illustrated from Área de Conservación (ACG) in northwestern Costa Rica. The new genus shares a long, crescent- or ribbon-shaped signum in the corpus bursae of the female genitalia with Aesiocopa Zeller, 1877, Amorbia Clemens, 1860, Amorbimorpha Kruse, 2011, Coelostathma Clemens, 1860, Lambertiodes Diakonoff, 1959, Paramorbia Powell & Lambert, 1986, Rhynchophyllus Meyrick, 1932, Sparganopseustis Powell & Lambert, 1986, Sparganothina Powell, 1986, and Sparganothoides Lambert & Powell, 1986. Putative autapomorphies for Sparganocosma include the extremely short uncus; the smooth (unspined) transtilla; and the upturned, free, distal rod of the sacculus. Adults of Sparganocosma docsturnerorum have been reared numerous times (>50) from larvae collected feeding on rain forest Asplundia utilis (Oerst.) Harling and Asplundia microphylla (Oerst.) Harling (Cyclanthaceae) at intermediate elevations (375–500 m) in ACG. Whereas most Sparganothini are generalists, typically feeding on two or more plant families, Sparganocosma docsturnerorum appears to be a specialist on Asplundia, at least in ACG. The solitary parasitoid wasp Sphelodon wardae Godoy & Gauld (Ichneumonidae; Banchinae) has been reared only from the larvae of Sparganocosma docsturnerorum.     

Crystallographic studies on the binding of selectively deuterated LLD- and LLL-substrate epimers by isopenicillin N synthase

Isopenicillin N synthase (IPNS) is a non-heme iron(II) oxidase which catalyses the biosynthesis of isopenicillin N (IPN) from the tripeptide δ-l-α-aminoadipoyl-l-cysteinyl-d-valine (lld-ACV). Herein we report crystallographic studies to investigate the binding of a truncated lll-substrate in the active site of IPNS. Two epimeric tripeptides have been prepared by solution phase peptide synthesis and crystallised with the enzyme. δ-l-α-Aminoadipoyl-l-cysteinyl-d-2-amino-3,3-dideuteriobutyrate (lld-ACd₂Ab) has the same configuration as the natural substrate lld-ACV at each of its three stereocentres; its epimer δ-l-α-aminoadipoyl-l-cysteinyl-l-2-amino-3,3-dideuteriobutyrate (lll-ACd₂Ab) has the opposite configuration at its third amino acid. lll-ACV has previously been shown to inhibit IPNS turnover of its substrate lld-ACV; the all-protiated tripeptide δ-l-α-aminoadipoyl-l-cysteinyl-d-2-aminobutyrate (lld-ACAb) is a substrate for IPNS, being turned over to a mixture of penam and cepham products. Comparisons between the crystal structures of the IPNS:Fe(II):lld-ACd₂Ab and IPNS:Fe(II):lll-ACd₂Ab complexes offer a possible rationale for the previously observed inhibitory effects of lll-ACV on IPNS activity.