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John J. WIENS Daniel S. MOEN 《植物分类学报》2008,46(3):307-314
The effect of missing data on phylogenetic methods is a potentially important issue in our attempts to reconstruct the Tree of Life. If missing data are truly problematic, then it may be unwise to include species in an analysis that lack data for some characters (incomplete taxa) or to include characters that lack data for some species. Given the difficulty of obtaining data from all characters for all taxa (e.g., fossils), missing data might seriously impede efforts to reconstruct a comprehensive phylogeny that includes all species. Fortunately, recent simulations and empirical analyses suggest that missing data cells are not themselves problematic, and that incomplete taxa can be accurately placed as long as the overall number of characters in the analysis is large. However, these studies have so far only been conducted on parsimony, likelihood, and neighbor-joining methods. Although Bayesian phylogenetic methods have become widely used in recent years, the effects of missing data on Bayesian analysis have not been adequately studied. Here, we conduct simulations to test whether Bayesian analyses can accurately place incomplete taxa despite extensive missing data. In agreement with previous studies of other methods, we find that Bayesian analyses can accurately reconstruct the position of highly incomplete taxa (i.e., 95% missing data), as long as the overall number of characters in the analysis is large. These results suggest that highly incomplete taxa can be safely included in many Bayesian phylogenetic analyses. 相似文献
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氨基酸分析的准确度和精确度(续)RichardLDavies,DRobinBaigent,MalcolmSLevitt,YasinMollah,CarlJRayner和AlisonBFrensham著张林生译魏景刚校西北农业大学实验中心陕西杨陵712... 相似文献
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我国旱地小麦区域试验精确度及其环境综合评价 总被引:1,自引:0,他引:1
选用2003-2009年我国4个麦区、233个品种(系)、82个试点组成的全国旱地冬春小麦区域试验产量资料,研究了我国旱地小麦国家区域试验点的精确度、环境鉴别力和代表性,并对试验环境进行综合评价.结果表明:一年一点试验平均试验误差变异系数(CV)为6.1%,平均相对最小显著差数(RLSD)为10.5%,一年多点试验的CV值均在8.2%以内,大多数试点的CV和RLSD控制得较好,试验精确度和品种比较精确度均较高.试点分辨力以西北春小麦组最强,其他3个产区差别不大.试点代表性以东北春小麦组最好、西北春小麦组最差.在综合考虑试点分辨力和代表性基础上,借助GGE模型构建环境综合评价参数(rg-h),结果显示,我国旱地小麦理想试点比例只有32.4%,产区间比较,理想试点的比例依次为:西北春小麦旱地组(40.9%)>东北春小麦旱地组(33.3%)>黄淮冬小麦旱地组(30.4%)>北部冬小麦旱地组(21.4%). 相似文献
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蛋白质组学逐渐从定性研究转向定量研究。在定量蛋白质组学技术中,相对和绝对定量的等量异位标签(Isobaric tags for relative and absolute quantitation,iTRAQ)是应用最广泛的技术之一,具有通量高、稳定性强及不受样品来源制约等优点,几乎可以对任意样品进行标记,而且可以同时对多达8个样品进行定量分析,有效地提高了通量。iTRAQ技术不断改进,其定量准确性显著提高,适用的平台越来越多,为微生物、动物、植物、生物医学领域蛋白质及其翻译后修饰组研究创造了条件。文中综述了高精度iTRAQ技术在定量蛋白质组学研究中的最新发展及其应用。 相似文献
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类群取样与系统发育分析精确度之探索 总被引:6,自引:2,他引:4
Tracy A. HEATH Shannon M. HEDTKE David M. HILLIS 《植物分类学报》2008,46(3):239-257
Appropriate and extensive taxon sampling is one of the most important determinants of accurate phylogenetic estimation. In addition, accuracy of inferences about evolutionary processes obtained from phylogenetic analyses is improved significantly by thorough taxon sampling efforts. Many recent efforts to improve phylogenetic estimates have focused instead on increasing sequence length or the number of overall characters in the analysis, and this often does have a beneficial effect on the accuracy of phylogenetic analyses. However, phylogenetic analyses of few taxa (but each represented by many characters) can be subject to strong systematic biases, which in turn produce high measures of repeatability (such as bootstrap proportions) in support of incorrect or misleading phylogenetic results. Thus, it is important for phylogeneticists to consider both the sampling of taxa, as well as the sampling of characters, in designing phylogenetic studies. Taxon sampling also improves estimates of evolutionary parameters derived from phylogenetic trees, and is thus important for improved applications of phylogenetic analyses. Analysis of sensitivity to taxon inclusion, the possible effects of long-branch attraction, and sensitivity of parameter estimation for model-based methods should be a part of any careful and thorough phylogenetic analysis. Furthermore, recent improvements in phylogenetic algorithms and in computational power have removed many constraints on analyzing large, thoroughly sampled data sets. Thorough taxon sampling is thus one of the most practical ways to improve the accuracy of phylogenetic estimates, as well as the accuracy of biological inferences that are based on these phylogenetic trees. 相似文献
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张林生 《氨基酸和生物资源》1996,18(1):49-54
五个实验室分两部分协作研究改进和测定氨基酸分析的准确皮和精确度。末公开发表的第一部分结果由各实验室按照自己的最佳实验操作处理。本文报道第二部分,分析了三个纯化的和六个常规的蛋白质,每种蛋白质用三种不同的方法处理(常规水解、延长水解和下文提及到的氧化水解)。文献中报道的结果得到了证实,尽管其结果不太一致,还常有一些特殊的结果。得到文献充分证明的处理结果对于分析工作适应不同的要求是必不可少的。由于重复性变异较高,没有对某一个实验结果做进一步的统计分析。重复性(实验室内部)的变异系数为4.1%,再现性(实验室之间)的变异系数为13.1%。纯化蛋白的最佳氨基酸估计和根据一个实验室的5个氨基酸与另一个实验室的5个氨基酸的偏差提供的排列顺序(P<0.01)计算的估计是不符的。对常规蛋白质结果的删除临界值采用P<0.01时,最佳估计的9.9%被删除,偏差为8.1%,奇异值为3.2%,偏差和奇异共有者为1.3%。当这些值被删除时,19/96平均值变化不超过4%,9/96变化为4~8%,8/96变化更大些,集合的变异系数由8.2%降到5.4%。在这种临界值下,常规蛋白质的每个实验室结果中有0~31%删除。在较低的临界值(P<? 相似文献
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目的:探讨散射免疫法和荧光免疫层析法在血清β2-微球蛋白中的检测效果对比观察及精确度。方法:选取2016年10月-2017年8月我院收治的肝肾功能损伤患者88例,对患者分别应用散射免疫法以及荧光免疫层析法进行检测。对比两组方法血清β2-微球蛋白的检测结果、灵敏度、特异性以及精确度。结果:检测结果方面,荧光免疫分析法患者的检测率明显高于散射免疫法,漏检率明显低于散射免疫法(P0.05);荧光免疫层析法的灵敏度、特异性以及诊断符合率明显高于散射免疫法(P0.05);各项指标水平方面,患者血清β2-微球蛋白、肌酐、尿酸以及尿素等指标的水平明显高于正常水平(P0.05);精确度方面,荧光免疫层析法批间、批内的精确度明显高于散射免疫法(P0.05)。结论:对患者应用荧光免疫层析法检测血清β2-微球蛋白,有较高的检测符合率、灵敏度以及准确度,能够满足临床检测过程中的要求,进而有利于患者的诊断和治疗,临床上应当进一步推广应用。 相似文献
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