The human plasma proteome: analysis of Chinese serum using shotgun strategy

We have investigated the serum proteome of Han-nationality Chinese by using shotgun strategy. A complete proteomics analysis was performed on two reference specimens from a total of 20 healthy donors, in which each sample was made from ten-pooled male or female serum, respectively. The methodology used encompassed (1) removal of six high-abundant proteins; (2) tryptic digestion of low- and high-abundant proteins of serum; (3) separation of peptide mixture by RP-HPLC followed by ESI-MS/MS identification. A total of 944 nonredundant proteins were identified under a stringent filter condition (X(corr) > or = 1.9, > or = 2.2, and > or = 3.75, < or = C(n) > or = 0.1, and R(sp) > or = 4.0) in both pooled male and female samples, in which 594 and 622 entire proteins were found, respectively. Compared with the total 3020 protein identifications confirmed by more than one laboratory or more than one specimen in HUPO Plasma Proteome Project (PPP) participating laboratories recently, 206 proteins were identified with at least two distinct peptides per protein and 185 proteins were considered as high-confidence identification. Moreover, some lower abundance serum proteins (ng/mL range) were detected, such as complement C5 and CA125, routinely used as an ovarian cancer marker in plasma and serum. The resulting nonredundant list of serum proteins would add significant information to the knowledge base of human plasma proteome and facilitate disease markers discovery.     

植物丙酮酸磷酸双激酶（PPDK）研究进展

丙酮酸磷酸双激酶（PPDK）是C4植物和景天科酸代谢（CAM）植物光合作用的关键酶,催化形成固定CO2的初始分子受体磷酸烯醇式丙酮酸（PEP）。本文重点比较了植物的ppDK基因结构及分子进化关系,综述了PPDK在C4植物和C3植物中的功能、PPDK的调控机理、PPDK在胁迫条件下的功能以及转PPDK基因等在近年来的研究进展。     

Chitosan-modified poly(acrylonitrile-co-acrylic acid) nanofibrous membranes for the immobilization of concanavalin A

Lectin affinity membranes have been receiving much attention for the separation and detection of various glycoconjugates. In this work, we present a simple and efficient method for the preparation of lectin affinity nanofibrous membranes. Chitosan-modified poly(acrylonitrile-co-acrylic acid) (PANCAA) nanofibrous membranes were first prepared by a coupling reaction between the primary amino groups of chitosan and the carboxyl groups of PANCAA electrospun membranes. Surface characterizations by attenuated total reflectance Fourier transform infrared spectroscopy (FT-IR/ATR), X-ray photoelectron spectroscopy (XPS) and field-emission scanning electron microscopy (FESEM) confirm the chemical and morphological changes of the studied nanofibrous membranes. Fluorescence-labeled concanavalin A (FL-Con A) was then immobilized on these membranes via noncovalent binding. Analyses by fluorescence spectrophotometer (FS) and confocal laser scanning microscopy (CLSM) reveal that the immobilization of Con A onto the modified nanofibrous membranes has been successfully achieved on the basis of the electrostatic interaction and the specific recognition between Con A and chitosan. The results show that the amount of adsorbed FL-Con A increases dramatically with the increasing coupling degree of chitosan (CDC) on the nanofibrous membrane. Moreover, Con A immobilized on the chitosan-modified nanofibrous membranes (CMNMs) can remain relatively stable at pH 5.3. Therefore, it is believed that this work may provide a new kind of material for affinity application.     

微宇宙模拟溢油条件下沉积物中蓝细菌多样性

【目的】在不同浓度原油胁迫下,研究沉积物中原油降解规律及蓝细菌的响应机制,探讨蓝细菌对原油的耐受程度,并揭示蓝细菌种属结构组成的演替规律,为预测和判断溢油污染是否会造成富营养化等次生环境问题提供依据。【方法】建立微宇宙模拟实验体系,设置未添加原油对照组(CK组)及一系列高浓度原油处理组(25、125和250 g/kg干重,分别为LO组、MO组和HO组),通过气相色谱-氢火焰离子化检测器分析微宇宙培养期间原油降解规律。采用蓝细菌16SrRNA基因分析蓝细菌多样性和丰度变化规律,以及蓝细菌各种属的演替情况。【结果】微宇宙培养第31天时,在最低浓度处理组(LO组)沉积物表层出现片状绿色菌苔,而其他处理组和对照组未出现此现象。蓝细菌16SrRNA基因克隆文库结果表明,在溢油条件下所有处理组的蓝细菌多样性均降低,但有一些种属出现富集,如Oscillatoria和Prochlorococcus等。此外,也监测到大量的不可培养种属,预示着沉积物中可能存在新种属的蓝细菌。【结论】蓝细菌对原油具有较高耐受性,25 g/kg浓度原油会对蓝细菌生长产生刺激作用,且可能进一步引起蓝细菌富集。原油会引起蓝细菌多样性降低,但个别种属会发生富集,说明这些种属对原油具有较高耐受性,甚至发挥重要功能,如Oscillatoria具有固氮功能。本研究在分子水平上研究了蓝细菌对原油的响应,对蓝细菌分子生态研究具有重要意义。     

动脉粥样硬化易损斑块的核医学和磁共振分子影像学研究进展

动脉粥样硬化分子影像学通过使用具有敏感性和特异性影像对比的分子探针针对动脉粥样硬化斑块相关的特定分子进行分子成像.该方法会极大地提高对动脉粥样硬化病变特性的检测水平和增强对该病变特征,尤其对斑块的组成成份的识别能力.斑块的组成成份和斑块的破裂、斑块的易损性以及斑块破裂后导致的结果密切相关.因此了解斑块组成成份的在体无创性检测将对动脉粥样硬化病人的治疗和判断预后产生非常重要的临床应用价值.     

陕西榆林地区农田灯诱地下害虫种类组成及优势种群发生动态

为了明确陕西榆林地区农田地下害虫种类组成及优势种群发生动态,于2016年4月1日至2019年9月28日,在陕西省榆林市现代农业示范园,设置太阳能自动虫情测报箱对地下害虫进行收集,在室内对标本进行鉴定和数据分析。在榆林市农田一共灯诱到地下害虫12种,隶属3目5科。地下害虫混合种群发生期为4月中旬至9月上旬,盛发期为4月下旬至8月上旬。小地老虎Agrotis ypsilon、东方绢金龟Maladera orientalis、阔胫绢金龟Maladera verticalis和黄褐丽金龟Anomala exoleta是榆林农田地下害虫主要优势种群。小地老虎灯诱高峰期为4月上旬至5月中旬以及6月上旬至7月下旬,东方绢金龟的灯诱高峰期为4月中旬至6月中旬,阔胫绢金龟灯诱高峰期为6月上旬至8月上旬,黄褐丽金龟灯诱高峰期为6月中旬至7月上旬。本研究为榆林地区农田地下害虫的监测和综合治理提供了基础资料。     

15株中国TT病毒基因型鉴定和部分序列分析

TT病毒(TTV)为一种新鉴定的输血后肝炎相关的病毒.用聚合酶链式反应(PCR)扩增TTV DNA序列核苷酸1915到2185之间的片段,并将该片段克隆入pGEM-T Easy载体.重组克隆经酶切鉴定后,用全自动测序仪测序,发现本组病例中15株TTV毒株间的同源性在66.8%到99.3%之间,与TTV日本株比较同源性在66.1%到97.4%之间,分析结果显示在我国不仅有国外已报告的不同基因亚型毒株存在,而且,分离到的3株TTV毒株与日本株G1组和G2组的异源性分别达到13.3%-33.2%,可能为新的TTV基因亚型.     

MTH1745, a protein disulfide isomerase-like protein from thermophilic archaea, <Emphasis Type="Italic">Methanothermobacter thermoautotrophicum</Emphasis> involving in stress response

MTH1745 is a putative protein disulfide isomerase characterized with 151 amino acid residues and a CPAC active-site from the anaerobic archaea Methanothermobacter thermoautotrophicum. The potential functions of MTH1745 are not clear. In the present study, we show a crucial role of MTH1745 in protecting cells against stress which may be related to its functions as a disulfide isomerase and its chaperone properties. Using real-time polymerase chain reaction analyses, the level of MTH1745 messenger RNA (mRNA) in the thermophilic archaea M. thermoautotrophicum was found to be stress-induced in that it was significantly higher under low (50°C) and high (70°C) growth temperatures than under the optimal growth temperature for the organism (65°C). Additionally, the expression of MTH1745 mRNA was up-regulated by cold shock (4°C). Furthermore, the survival of MTH1745 expressing Escherichia coli cells was markedly higher than that of control cells in response to heat shock (51.0°C). These results indicated that MTH1745 plays an important role in the resistance of stress. By assay of enzyme activities in vitro, MTH1745 also exhibited a chaperone function by promoting the functional folding of citrate synthase after thermodenaturation. On the other hand, MTH1745 was also shown to function as a disulfide isomerase on the refolding of denatured and reduced ribonuclease A. On the basis of its single thioredoxin domain, function as a disulfide isomerase, and its chaperone activity, we suggest that MTH1745 may be an ancient protein disulfide isomerase. These studies may provide clues to the understanding of the function of protein disulfide isomerase in archaea.     

Associations of fibroblast growth factor 21 gene 3' untranslated region single-nucleotide polymorphisms with metabolic syndrome, obesity, and diabetes in a Han Chinese population

Fibroblast growth factor 21 (FGF-21) is a novel regulator for metabolic syndrome (MetS), diabetes, and obesity. However, no study has been performed on the association of these diseases with FGF-21 gene polymorphism. The aim of the study was to investigate the association of 3' untranslated region (UTR) single-nucleotide polymorphisms (SNPs) in the FGF-21 gene with MetS, obesity, and diabetes in the Han Chinese population. A total of 291 subjects were recruited from the Han Chinese population in Sichuan province. The genotypes of FGF-21 were determined by polymerase chain reaction-restriction fragment length polymorphism. The genotypes were confirmed by sequencing. No polymorphisms were found in rs11665841 (1 of 291) and rs3745706 (2 of 291). We did not find an association between genotype frequencies of SNP rs11665896 and lipid concentration, glucose concentration, or blood pressure. The TG/GG genotype relative to the TT genotype had an age- and sex-adjusted odds ratio of 1.41 for MetS (p=0.149), 1.84 (p=0.016) for obesity (body mass index ≥25?kg/m(2)), and 1.19 (p=0.492) for diabetes. Genetic variation of the 3' UTR of the FGF-21 gene was associated with obesity, however, not with MetS or diabetes.     

Isolation and characterization of a new strain of Methanothermobacter marburgensis DX01 from hot springs in China

Strain DX01, a thermophilic methanogen, was isolated from a hot spring in China. Strain DX01 grew only on H₂/CO₂. The DNA G + C content is 52 mol% and optimal growth temperature is 65 °C. The cell pellet is brick red. By analyzing 16S rRNA sequence, methyl-coenzyme M reductase I, gamma subunit protein sequences, we determined the DX01 strain to be closely related to the species of Methanothermobacter marburgensis. In addition, Methanothermobacter thermautotrophicus delta H^T and strain DX01 had clear differences in their biochemical composition and protein expression profiles. Based on the above analysis, we propose that strain DX01 is a novel strain within thermoautotrophicus the species of M. marburgensis, namely M. marburgensis DX01. The isolation and characterization of the new M. marburgensis DX01 strain expands the known range of the Methanothermobacter genus.