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1.
Transposable elements derived from the 7SL RNA gene, such as Alu elements in primates, have had remarkable success in several mammalian lineages. The results presented here show a broad spectrum of functions for genomic segments that display sequence composition similarities with the 7SL RNA gene. Using thoroughly documented loci, we report that DNaseI-hypersensitive sites can be singled out in large genomic sequences by an assessment of sequence composition similarities with the 7SL RNA gene. We apply a root word frequency approach to illustrate a distinctive relationship between the sequence of the 7SL RNA gene and several classes of functional genomic features that are not presumed to be of transposable origin. Transposable elements that show noticeable similarities with the 7SL sequence include Alu sequences, as expected, but also long terminal repeats and the 5′-untranslated regions of long interspersed repetitive elements. In sequences masked for repeated elements, we find, when using the 7SL RNA gene as query sequence, distinctive similarities with promoters, exons and distal gene regulatory regions. The latter being the most notoriously difficult to detect, this approach may be useful for finding genomic segments that have regulatory functions and that may have escaped detection by existing methods. 相似文献
2.
Jean-Michel Panoff Bouachanh Thammavongs Jean-Marie Laplace Axel Hartke Philippe Boutibonnes Yanick Auffray 《Cryobiology》1995,32(6)
The physiology of the cold-shock response in Lactococcus lactis subsp. lactis IL1403 at a subzero temperature, and cold-induced adaptation to heat shock, were investigated. Preincubation of cells at 8°C led to the development of cryotolerance, i.e., an enhanced capacity to survive exposure to freezing temperature (-20°C). Pretreatment with chemicals considered to be chaotropic agents did not induce cryotolerance or, in contrast, led to a decrease in survival capacity at -20°C. Interestingly, preincubation at 8°C led also to thermololerance to a 52°C challenge, but preincubation of cells at 42°C for 30 min did not improve their capacity to survive freezing-thawing exposure. These results demonstrate that cold- and heat-shock responses are physiologically linked by a complex relation. Furthermore, food processing at low temperature before subzero or heat treatment may need to be reconsidered. 相似文献
3.
Attempt to detect recombination between B-F and B-L genes within the chicken B complex by serological typing,in vitro MLR,and RFLP analyses 总被引:1,自引:1,他引:0
Karel Hála Anne-Marie Chaussé Yves Bourlet Olli Lassila Viktor Hasler Charles Auffray 《Immunogenetics》1988,28(6):433-438
In search for recombinants within the chicken major histocompatibility B complex, 1155 animals from crosses between the congenic lines CB (B12) and CC (B4) were tested with alloantibodies and monoclonal antibodies for the B-F (class I), B-L (class II), and B-G (class IV) antigens and by mixed lymphocyte reaction. The absence of detectable recombination was confirmed by restriction fragment length polymorphism analysis with B-L
and B-F probes. Together with previous reports, this indicates that the distance between the B-F and B-L loci is below 0.01 centimorgan. 相似文献
4.
The cell-surface antigen CD4 plays a pivotal role in the class II MHC-restricted response of specific T lymphocytes, and serves as the major receptor of human immunodeficiency virus (HIV). The recent elucidation of CD4 function in physiological and pathological conditions has improved prospects for CD4-targeted immune therapy by facilitating the design of therapeutic strategies aimed at blocking CD4 function, delivering immunosuppressive signals via this receptor molecule, or selectively depleting CD4+ cells. 相似文献
5.
SB subregion of the human major histocompatibility complex: gene organization, allelic polymorphism and expression in transformed cells 总被引:7,自引:0,他引:7
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K Okada H L Prentice J M Boss D J Levy D Kappes T Spies R Raghupathy R A Mengler C Auffray J L Strominger 《The EMBO journal》1985,4(3):739-748
The SB region of the human major histocompatibility complex (MHC) has been cloned from cosmid and lambda phage libraries made from the human B-lymphoblastoid cell line Priess (DR4/4, DC4/4, SB3/4). Two alpha genes and two beta genes are encoded in the 100 kb long SB region in the order SB alpha-SB beta-SX alpha-SX beta. The SB alpha and SB beta genes encode the alpha and beta subunits of the SB subset of class II MHC molecules. Both the SX alpha and the SX beta genes are pseudogenes in the haplotype examined. From the isolated clones, the two haplotypes of the Priess cell line, SB3 and SB4, are distinguished by nucleotide sequencing and blot hybridization analyses. Restriction site polymorphisms between the SB3 and SB4 clones were observed only in relatively small regions of the SB beta and SX beta genes. A mouse macrophage cell line was transfected with one of the cosmid clones containing both SB alpha and SB beta genes. Expression of the alpha and beta genes was detected by fluorescene-activated cell sorting (FACS) and two-dimensional gel electrophoresis using SB-specific monoclonal antibodies. 相似文献
6.
Dr. Patrick Chardon Marek Kirszenbaum Philippa R. Cullen Claudine Geffrotin Charles Auffray Jack L. Strominger Daniel Cohen Marcel Vaiman 《Immunogenetics》1985,22(4):349-358
Four cDNA probes for the human major histocompatibility complex (MHC) were used to investigate the sheep MHC, in conjunction with serological typing for ovine lymphocyte antigen (OLA). Lymphocytes from a family (two parents and five offspring) of Romanov sheep were subjected to genomic DNA digestion by the restriction endonuclease Eco RI, followed by gel electrophoresis. A single Southern blot representing all seven individuals was then consecutively hybridized with the class I, alpha-DC, beta-DR, and C4 probes, which were originally designed to identify HLA class I, class II (DC and DR), and C4 products, respectively. Using each of the three class I/class II probes, several bands showing DNA polymorphism were detected. The segregation of these bands in the five offspring exactly paralleled the OLA haplotype segregation established by serological typing. A further eight individuals carrying haplotypes which were phenotypically identical to those in the above-mentioned family showed bands in the corresponding positions when tested with the same three probes. Using the C4 probe, no polymorphism was detected in these fifteen individuals.Abbreviations used in this paper MHC
major histocompatibility complex
- OLA
ovine lymphocyte antigen
- kbp
kilobase pair(s)
- MLR
mixed lymphocyte reaction
- RFLP
restriction fragment length polymorphism 相似文献
7.
Physiological response of Enterococcus faecalis JH2-2 to cold shock: growth at low temperatures and freezing/thawing challenge 总被引:1,自引:0,他引:1
B. Thammavongs D. Corroler J.-M. Panoff Y. Auffray P. Boutibonnes 《Letters in applied microbiology》1996,23(6):398-402
Growth at low positive temperatures and induced phenotypic resistance to extreme cold temperature (freezing/thawing cycles) of Enterococcus faecalis were investigated. The effect of low temperatures on the specific growth rates was studied; use of Arrhenius profile and Ratkovsky 'square-root' model allowed determination of the 'temperature characteristic' (μ≅ 13 800 cal mol-1 ), the critical temperature (Tcrit ≅ 17.9C) and the notional minimum growth temperature (To ≅ 3.6C). Preincubation of Ent. faecalis cells at low temperatures (8–16C) during periods corresponding to their generation time resulted in an increased ability of the bacterial cells to withstand short periods of freezing/thawing (-20C/+37C) challenge. Moreover, the increase of the incubation period at low positive temperature led to a higher degree of adaptation. 相似文献
8.
Starvation-Induced Stress Resistance in Lactococcus lactis subsp. lactis IL1403 总被引:2,自引:1,他引:1
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Axel Hartke Sandrine Bouche Xavier Gansel Philippe Boutibonnes Yanick Auffray 《Applied microbiology》1994,60(9):3474-3478
Carbohydrate-starved cultures of Lactococcus lactis subsp. lactis IL1403 showed enhanced resistance to heat, ethanol, acid, osmotic, and oxidative stresses. This cross-protection seems to be established progressively during the transitional growth phase, with maximum resistance occurring when cells enter the stationary phase. Chloramphenicol or rifamycin treatment does not abolish the development of a tolerant cell state but, on the contrary, seems to provoke this response in L. lactis subsp. lactis. 相似文献
9.
10.
The changes in skull shape that occur in the hybrid zone between the two European subspecies of the house mouse ( Mus musculus musculus and M. m. domesticus ) were studied by relative warp analyses. Landmarks observed on the ventral view of the skulls of 269 mice sampled in 18 localities in Denmark were analysed. Each population was also characterized by a hybrid index estimated from allozymic data. Although no clear pattern of within-population variability of shape could be established across the hybrid zone, the shape changes among the 18 populations were found to be correlated with the allozymic introgression but not with geographical location. Finally, the cline obtained for skull shape seems to be steeper than that corresponding to the average allozyme hybrid index which suggests that skull development could be slightly perturbed in hybrids. 相似文献