The 50th anniversary of gene therapy: Beginnings and present realities

Applying my experience in microbial genetics, especially in the genetic transformation/transduction of Bacilus subtilis bacteria, I decided around 1956 to develop a similar system for eukaryotic, especially human cell cultures. I believed it would permit the development of clinical applications for replacing defective genes to treat or cure some of the genetic diseases.     

The homeobox gene Gsh2 is required for retinoid production in the embryonic mouse telencephalon

We have examined the role of the homeobox gene Gsh2 in retinoid production and signaling within the ventral telencephalon of mouse embryos. Gsh2 mutants exhibit altered ventral telencephalic development, including a smaller striatum with fewer DARPP-32 neurons than wild types. We show that the expression of the retinoic acid (RA) synthesis enzyme, retinaldehyde dehydrogenase 3 (Raldh3, also known as Aldh1a3), is reduced in the lateral ganglionic eminence (LGE) of Gsh2 mutants. Moreover, using a retinoid reporter cell assay, we found that retinoid production in the Gsh2 mutants is markedly reduced. The striatal defects in Gsh2 mutants are thought to result from ectopic expression of Pax6 in the LGE. Previously, we had shown that removal of Pax6 from the Gsh2 mutant background improves the molecular identity of the LGE in these double mutants; however, Raldh3 expression is not improved. The Pax6;Gsh2 double mutants possess a larger striatum than the Gsh2 mutants, but the disproportionate reduction in DARPP-32 neurons is not improved. These findings suggest that reduced retinoid production in the Gsh2 mutant contributes to the striatal differentiation defects. As RA promotes the expression of DARPP-32 in differentiating LGE cells in vitro, we examined whether exogenous RA can improve striatal neuron differentiation in the Gsh2 mutants. Indeed, RA supplementation of Gsh2 mutants, during the period of striatal neurogenesis, results in a significant increase in DARPP-32 expression. Thus, in addition to the previously described role for Gsh2 to maintain correct molecular identity in the LGE, our results demonstrate a novel requirement of this gene for retinoid production within the ventral telencephalon.     

Miospore stratigraphy of Lower and early Middle Devonian deposits from Tidikelt, Central Sahara, Algeria

The Tidikelt region forms an outstanding area for subsurface Lower Devonian stratigraphy in the central Algerian Sahara. Sediments from five boreholes have revealed abundant and diverse assemblages of miospores, acritarchs, chitinozoa, scolecodont and microplant remains. The miospores are moderately well preserved. Three new miospore species (Dibolisporites saharansis nov. sp. Hassan Kermandji, Acinosporites conatus nov. sp. Hassan Kermandji and Scylaspora tidikeltense nov. sp. Hassan Kermandji) are described. Miospore assemblages vary through the regressive and transgressive sequences. Seven miospore assemblage biozones, including six new miospore assemblage biozones (Scylaspora tidikeltense-Perotrilites microbaculatus, Dictyotriletes emsiensis-Emphanisporites spinaeformis, Apiculiretusispora arenorugosa-Camptozonotriletes caperatus, Verrucosisporites polygonalis-Dictyotriletes subgranifer, Emphanisporites annulatus-Geminospora svalbardiae, Hystricosporites microancyreus-Grandispora protea, Calyptosporites velatus-Rhabdosporites langii) are proposed for the Lower and early Middle Devonian rocks of Tidikelt Plateau. The combined use of distinctive, wide distribution cosmopolitan and Gondwanan forms as biozonal and species characteristics permits accurate subdivision, dating and correlation of Tidikelt successions with other similar miospore zones of the Lower Devonian of Europe, Canada and other parts of Gondwana plate. The miospore data provide new explanations to stratigraphic relationships of regional rock units, sedimentary cycles and stratigraphic hiatus. The miospore biozones are proposed as a provincial biozonation, which may also be applied to other Palaeozoic rocks of similar miospore content.     

Ovaries and phylogeny of dermapterans once more: Ovarian characters support paraphyly of Spongiphoridae

The Dermaptera is an insect order with ca. 2200 described species classified in 11 families. Interestingly, recent morphological and molecular data suggest that at least three dermapteran families (Diplatyidae, Pygidicranidae and Spongiphoridae) are paraphyletic. Here we present results of histological analyses of ovaries and ovarioles in two representatives of Spongiphoridae: Chaetospania borneensis and Irdex chapmani. We show that both the ovaries and ovarioles of studied species are morphologically disparate. The ovaries of C. borneensis consist of shortened ovarioles attached to elongated lateral oviducts and are apparently similar to the ovaries of the Eudermaptera. In contrast, I. chapmani share all the important ovarian characters with more basal taxa, i.e. Anisolabididae and Labiduridae. These findings lend additional support to the paraphyly of Spongiphoridae.     

Allele surfing promotes microbial adaptation from standing variation

The coupling of ecology and evolution during range expansions enables mutations to establish at expanding range margins and reach high frequencies. This phenomenon, called allele surfing, is thought to have caused revolutions in the gene pool of many species, most evidently in microbial communities. It has remained unclear, however, under which conditions allele surfing promotes or hinders adaptation. Here, using microbial experiments and simulations, we show that, starting with standing adaptive variation, range expansions generate a larger increase in mean fitness than spatially uniform population expansions. The adaptation gain results from ‘soft’ selective sweeps emerging from surfing beneficial mutations. The rate of these surfing events is shown to sensitively depend on the strength of genetic drift, which varies among strains and environmental conditions. More generally, allele surfing promotes the rate of adaptation per biomass produced, which could help developing biofilms and other resource‐limited populations to cope with environmental challenges.     

Identification of palindromic sequences recognized by restriction endonucleases, as based on the tabularized sequencing data for seven viral and plasmid DNAs

Computer search of DNA sequences for phages φX174, G4, M13 and fd, plasmids pBR322 and pA03, and virus SV40, was employed to prepare tables specifying the size classes and frequencies of DNA segments located between all possible tetra-, penta- and hexanucleotide palindromes. As described earlier (Fuchs et al., 1978), these tables permit identifying sequences recognized by most of the restriction endonucleases. The effect of sequencing errors on the accuracy of the present identification method is evaluated. Only four of the 224 listed sequences do not appear in any of the seven DNAs, leading to discussion (see Appendix) on the natural sequence distribution.