Impact of intensive cage fish farming on the phytoplankton and periphyton of a Scottish freshwater loch

Nutrients, phytoplankton and periphyton were monitored in a 71 ha shallow, unstratified lake used for intensive cage culture of rainbow trout. Inorganic nitrogen, ortho-phosphate and suspended solids were significantly higher near the cages and the bottom and, although declining during summer, nutrients did not reach levels which limit phytoplankton growth. Microcystis aeruginosa dominated the phytoplankton, with surface chlorophyll a reaching 189 µg l^–1 in August, but with no subsequent bloom collapse or deoxygenation. A sub-dominant community of vernal diatoms and Pediastrum spp. persisted. Periphyton was dominated by Melosira italica-subarctica. Algal species and water quality showed the lake to be highly eutrophic. Chlorophyll values predicted from a phosphorus-dependent eutrophication model agreed with observations but light limitation by self-shading and suspended farm wastes, aided by wind-induced turbulence, is believed to control algal growth rates and biomass. Implications for environmental management of intensive freshwater cage farms are discussed.     

SNP array karyotyping allows for the detection of uniparental disomy and cryptic chromosomal abnormalities in MDS/MPD-U and MPD

We applied single nucleotide polymorphism arrays (SNP-A) to study karyotypic abnormalities in patients with atypical myeloproliferative syndromes (MPD), including myeloproliferative/myelodysplastic syndrome overlap both positive and negative for the JAK2 V617F mutation and secondary acute myeloid leukemia (AML). In typical MPD cases (N = 8), which served as a control group, those with a homozygous V617F mutation showed clear uniparental disomy (UPD) of 9p using SNP-A. Consistent with possible genomic instability, in 19/30 MDS/MPD-U patients, we found additional lesions not identified by metaphase cytogenetics. In addition to UPD9p, we also have detected UPD affecting other chromosomes, including 1 (2/30), 11 (4/30), 12 (1/30) and 22 (1/30). Transformation to AML was observed in 8/30 patients. In 5 V617F+ patients who progressed to AML, we show that SNP-A can allow for the detection of two modes of transformation: leukemic blasts evolving from either a wild-type jak2 precursor carrying other acquired chromosomal defects, or from a V617F+ mutant progenitor characterized by UPD9p. SNP-A-based detection of cryptic lesions in MDS/MPD-U may help explain the clinical heterogeneity of this disorder.