Information filtering by synchronous spikes in a neural population

Information about time-dependent sensory stimuli is encoded by the spike trains of neurons. Here we consider a population of uncoupled but noisy neurons (each subject to some intrinsic noise) that are driven by a common broadband signal. We ask specifically how much information is encoded in the synchronous activity of the population and how this information transfer is distributed with respect to frequency bands. In order to obtain some insight into the mechanism of information filtering effects found previously in the literature, we develop a mathematical framework to calculate the coherence of the synchronous output with the common stimulus for populations of simple neuron models. Within this frame, the synchronous activity is treated as the product of filtered versions of the spike trains of a subset of neurons. We compare our results for the simple cases of (1) a Poisson neuron with a rate modulation and (2) an LIF neuron with intrinsic white current noise and a current stimulus. For the Poisson neuron, formulas are particularly simple but show only a low-pass behavior of the coherence of synchronous activity. For the LIF model, in contrast, the coherence function of the synchronous activity shows a clear peak at high frequencies, comparable to recent experimental findings. We uncover the mechanism for this shift in the maximum of the coherence and discuss some biological implications of our findings.     

Influence of nano‐zinc oxide on tropane alkaloid production,h6h gene transcription and antioxidant enzyme activity in Hyoscyamus reticulatus L. hairy roots

The use of nanotechnology and biotechnology to improve the production of plant bioactive compounds is growing. Hyoscyamus reticulatus L. is a major source of tropane alkaloids with a wide therapeutic use, including treatment of Parkinson's disease and to calm schizoid patients. In the present study, hairy roots were obtained from two‐week‐old cotyledon explants of H. reticulatus L. using the A7 strain of Agrobacterium rhizogenes. The effects of different concentrations of the signaling molecule nano‐zinc oxide (ZnO) (0, 50, 100 and 200 mg/L), with three exposure times (24, 48 and 72 h), on the growth rate, antioxidant enzyme activity, total phenol contents (TPC), tropane alkaloid contents and hyoscyamine‐6‐beta‐hydroxylase (h6h) gene expression levels were investigated. Growth curve analysis revealed a decrease in fresh and dry weight of ZnO‐treated hairy roots compared to the control. ANOVA results showed that the antioxidant activity of the enzymes catalase, guaiacol peroxidase and ascorbate peroxidase was significantly higher in the ZnO‐treated hairy roots than in the control, as was the TPC. The highest levels of hyoscyamine (37%) and scopolamine (37.63%) were obtained in hairy roots treated with 100 mg/L of ZnO after 48 and 72 h, respectively. Semi‐quantitative RT‐PCR analysis revealed the highest h6h gene expression was in hairy roots treated with 100 mg/L of ZnO after 24 h. It can be concluded that ZnO is as an effective elicitor of tropane alkaloids such as hyoscyamine and scopolamine due to its enhancing effect on expression levels of the biosynthetic h6h gene.     

The effect of resistance exercise on p53, caspase-9, and caspase-3 in trained and untrained men

Apoptosis is a programmed cell death that has been demonstrated in human and animal studies and plays an essential role to remove injured cells after acute strenuous exercise. Protein p53 plays important roles in regulating apoptosis via mitochondrial pathway. Therefore, the aims of this study were to determine the effects of acute resistance exercise (RE) on serum p53, caspase-9, and caspase-3, markers of apoptosis, and whether resistance training status influences the magnitude of the RE-induced apoptosis. Nine resistance-trained (RT) (age, 22.37 ± 1.99 years; height, 174 ± 5.04 cm; body weight, 71.32 ± 5.57 kg; and body mass index [BMI] 23.58 ± 2.05 kg·m(-2)) and 9 untrained (UT) college-age men (age, 22.25 ± 2.13 years; height, 171 ± 3.4 cm; body weight, 68.45 ± 3.23 kg; and BMI, 23.41 ± 1.08 kg·m(-2)) volunteered to participate in this study. Resistance-trained and UT men completed an RE bout consisting of 4 sets of 6 exercise at 80% of 1 repetition maximum until failure. Serum levels of p53, caspase-9, and caspase-3 were examined at preexercise (pre), immediately post (IP), 3 hours post (3 hours post), and 24 hours post RE (24 hours post). In UT, serum levels of p53, caspase-9, and caspase-3 were significantly increased at IP compared with RT. However, plasma insulin-like growth factor 1 level was higher for RT compared with UT at IP. Collectively, our data suggest the role of p53 in regulating apoptosis through mitochondrial pathway as measured by caspase-9 and caspase-3 after acute RE in UT. Our results also revealed that regular RT alters apoptosis biomarkers, especially the intrinsic pathway of apoptosis.     

Stratigraphic application of Thalassinoides ichnofabric in delineating sequence stratigraphic surfaces (Mid-Cretaceous), Kopet-Dagh Basin,northeastern Iran

This study integrates ichnological and sedimentological data to refine depositional sequences and interpretations of sea-level dynamics for the shallow marine, Albian–Cenomanian Aitamir Formation in northeastern Iran. Three ichnofabrics are present in a succession of glauconitic mudstone and sandstone. This is a sequence that grades upward from a lower glauconitic sandstone unit with trough cross-stratification, hummocky and ripple cross-lamination into a fining-up unit of mudstone with intercalated sandstone beds. The lower unit contains an ichoassemblage of the Ophiomorpha–Palaeophycus ichnofabric (upper shoreface), whereas the upper unit bears ichnoassemblages of the Thalassinoides ichnofabric (in a distinctive level at the top cycle which demarcates the base of the next cycle) (middle shoreface) and the Chondrites–Planolites ichnofabric (lower shoreface). An upper shoreface–lower shoreface trend from the Ophiomorpha–Palaeophycus ichnofabric to the Chondrites–Planolites ichnofabric represents a deepening-upward sequence. An integrated sedimentological and ichnological approach has allowed the recognition of the internal organization of the sequence and the characterization of significant discontinuity surfaces at sequence scales. Thalassinoides ichnofabric reveals colonization of firmgrounds during prolonged times between erosion and deposition related to transgressive surfaces. Transgressive surfaces (sequence boundaries) are generally well-cemented and marked by increased glauconite content, and densely crowded, predominantly vertical or oblique, relatively large, very distinct, unlined, and uncompacted burrows (omission suite) and are associated with rare highly abraded and fragmented shell remains.     

A reliable and efficient protocol for inducing genetically transformed roots in medicinal plant Nepeta pogonosperma

Nepeta pogonosperma is an important medicinal plant with anti-inflammatory effects. An efficient and reliable transformation system for this plant was developed through optimization of several factors which affected the rate of Agrobacterium rhizogenes mediated transformation. Five bacterial strains, A4, ATCC15834, LBA9402, MSU440 and A13, two explant types, leaves and stems, and several co-cultivation media were examined. The maximum rate of hairy root induction was obtained from stem explants using MSU440 and ATCC15834 bacterial strains. A drastic increase in the frequency of transformation (91 %) was observed when MS medium lacking NH₄NO₃, KH₂PO₄, KNO₃ and CaCl₂. Hairy root lines were confirmed by polymerase chain reaction (PCR) using primers of the rolB gene. According to Southern blot analysis, one T-DNA copy was inserted into each of the hairy root lines. In the present study, transgenic hairy roots have been obtained trough genetic transformation by A. rhizogenes harbouring two plasmids, the Ri plasmid and pBI121 binary vector harbouring gus reporter gene. Expression of the gus gene in transgenic hairy root was confirmed by histochemical GUS assay.     

A reliable and efficient protocol for inducing hairy roots in Papaver bracteatum

An efficient and reliable transformation system for a very important medicinal plant Papaver bracteatum was developed through optimization of several factors that affect the rate of effective A. rhizogenes-mediated transformation and growth rate of hairy root. Five bacterial strains, A4, ATCC15834, LBA9402, MSU440 and A13, and three explants types, hypocotyls, leaves and excised shoots were examined. The highest frequency of transformation was achieved using LBA9402 strain in the excised shoots. Several inoculation and co-cultivation media and different concentration of arginine were evaluated using LBA9402 strain and the excised shoots as explant. Interestingly, a drastic increase in the frequency of transformation (47.3 %) was observed when Murashige and Skoog medium containing 1 mM arginine and lacking NH₄NO₃ KH₂PO₄, KNO₃ and CaCl₂ was used. The effect of sucrose concentration and the ratio of NH₄ ⁺: NO₃ ^? on hairy root biomass was examined. Maximum biomass was obtained in 30 g/l sucrose and 20:10 mM ratio of NH₄ ⁺ to NO₃ ^? on MS medium. Transgenic hairy root lines were confirmed by polymerase chain reaction (PCR) and Southern hybridization.