Quantification of epithelial volume by image processing applied to ovarian tumors

This paper describes an image analysis technique for automated estimation of the percentages of epithelium and stroma in (tumor) tissue. The program is evaluated on ovarian tumors of the serous, mucinous, and endometrioid type. From standard paraffin sections, stained with pararosanilin Feulgen and naphthol yellow, a blue-yellow image pair was recorded. The blue image was used for the determination of the total tissue area and the yellow image for the epithelial area. For the latter the image processing method is based on the fact that epithelial nuclei are generally more tightly packed than stromal nuclei. A structural approach was applied, in which the segmentation of the nuclei was based on the image contrast range in the density domain. The method has been tested with 78 image pairs from 19 ovarian tumors with varying degrees of malignancy. The area percentages, as assessed with image processing, were strongly correlated to control percentages, established by interactive morphometry (r = 0.98).     

Evaluation of the prognostic value of morphometric features and cellular DNA content in FIGO I ovarian cancer patients

Approximately 20% to 40% of the patients with a FIGO I ovarian tumor die within five years after the diagnosis. Morphologic studies (typing and grading) of the primary tumor are prognostically important, but poorly reproducible. Therefore, the prognostic value of more objective techniques, such as morphometry and flow cytometric (FCM) DNA determinations, were evaluated in 33 adequately staged FIGO I patients with at least a five-year follow-up. The overall five-year survival in the group was 64%. Three patient categories were defined on the basis of two easily measured morphometric features, the mitotic activity index (MAI) and the volume percentage epithelium (VPE), which an earlier study had proved to be significantly associated with prognosis. The five-year survival rates were 91% for 11 patients in category A (MAI less than 30 and VPE less than 65), 67% for 9 patients in category B (MAI less than 30 and VPE greater than or equal to 65) and 38% for 13 patients in category C (MAI greater than or equal to 30). FCM showed 25 of the tumors to be diploid and 8 to be aneuploid. The cellular DNA content was also of prognostic value: the five-year survival figures for patients with diploid and aneuploid tumors were 68% and 37%, respectively. Combination of the morphometric and FCM features showed that, in diploid tumors, the morphometric features have additional prognostic value: the diploid-tumor-patient survival rates in categories A, B and C were 91%, 63% and 50%, respectively. None of the eight patients with aneuploid tumors fell in the morphometrically favorable category A while seven were in category C.(ABSTRACT TRUNCATED AT 250 WORDS)     

Quantification by laser scan microscopy of intracellular doxorubicin distribution.

Changes in intracellular drug localization accompany doxorubicin resistance in multidrug resistant tumor cells. The purpose of this study was to develop a method to quantify these changes and so detect different levels of resistance. Tumor cells were incubated with the fluorescent anthracycline doxorubicin (excitation at 480 nm; emission maximum at 560-590 nm) and were quantified using laser scanning microscopy. The fluorescent mode was used to record the intracellular drug distribution, whereas the absorption mode was used to define the nuclear and cytoplasmic boundaries. The cell compartments were delineated interactively on an image processing system and the ratio nuclear fluorescence/cytoplasmic fluorescence (N/C ratio) was determined. N/C ratios were: 1.8 in the Chinese hamster ovarian cell line AUXB1 and 0.1 in its MDR subline CHRC5; 3.8 in the human squamous lung cancer cell line SW-1573 and 1.8 and 0.4 in its MDR sublines SW-1573/2R120 and SW-1573/2R160, respectively; and 3.6 in the human myeloma cell line 8226/S and 2.1 and 1.0 in its MDR sublines 8226/Dox4 and 8226/Dox40, respectively. The doxorubicin distribution was independent of the doxorubicin concentration within a range from 1-32 microM. Furthermore, the progressive mean of the nuclear/cytoplasmic doxorubicin fluorescence ratio showed that a minimal sample size of 30 cells is necessary for reliable results. The results of two independent assessments showed a high reproducibility (r = 0.97). Thus, with the method described in this paper, it is possible to detect relatively low levels of doxorubicin resistance (factor 8).     

Voltage-dependent channel formation by rods of helical polypeptides

Summary The voltage-dependence of channel formation by alamethicin and its natural analogues can be described by a dipole flip-flop gating model, based on electric field-induced transbilayer orientational movements of single molecules. These field-induced changes in orientation result from the large permanent dipole moment of alamethicin, which adopts -helical conformation in hydrophobic medium. It was, therefore, supposed that the only structural requirement for voltage-dependent formation of alamethicin-type channels might be a rigid lipophilic helical segment of minimum length.In order to test this hypothesis we synthesized a family of lipophilic polypeptides—Boc-(Ala-Aib-Ala-Aib-Ala) _n -OMe,n=1–4—which adopt -helical conformation forn=2–4 and studied their interaction with planar lipid bilayers. Surprisingly, despite their large difference in chain length, all four polypeptides showed qualitatively similar behavior. At low field strength of the membrane electric field these polypeptides induce a significant, almost voltage-independent increase of the bilayer conductivity. At high field strength, however, a strongly voltage-dependent conductance increase occurs similar to that observed with alamethicin. It results from the opening of a multitude of ion translocating channels within the membrane phase.The steady-state voltage-dependent conductance depends on the 8^th–9^th power of polypeptide concentration and involves the transfer of 4–5 formal elementary charges. From the power dependences on polypeptide concentration and applied voltage of the time constants in voltage-jump current-relaxation experiments, it is concluded that channels could be formed from preexisting dodecamer aggregates by the simultaneous reorientation of six formal elementary charges. Channels exhibit large conductance values of several nS, which become larger towards shorter polypeptide chain length. A mean channel diameter of 19 Å is estimated corresponding roughly to the lumen diameter of a barrel comprised of 10 -helical staves. Similar to experiments with the N-terminal Boc-derivative of alamethicin we did not observe the burst sequence of nonintegral conductance steps typical of natural (N-terminal Ac-Aib)-alamethicin. Saturation in current/voltage curves as well as current inactivation in voltage-jump current-relaxation experiments are found. This may be understood by assuming that channels are generated as dodecamers but, while reaching the steady state, reduce their size to that of an octamer or nonamer. We conclude that the overall behavior of these synthetic polypeptides is very similar to that of alamethicin. They exhibit the same concentration and voltage-dependences but lack the stabilizing principle of resolved channel states characteristic of alamethicin.     

Retinotopische Beziehungen und Struktur rezeptiver Felder im Tectum opticum und Praetectum der Katze

Zusammenfassung 1.Von 600 Neuronen des Colliculus superior und Praetectums der Katze wurde mit Stahlmikroelektroden abgeleitet und der Ableitort markiert. Die Lage der rezeptiven Felder wurde mit bewegten und stationären Lichtreizen bestimmt und dem Ableitort zugeordnet.2.Im Colliculus superior und Praetectum fanden sich richtungsspezifische und richtungsunspezifische Bewegungsneurone. Ein Teil der praetectalen Neurone reagierte richtungsspezifisch auf Bewegungen vom Tier weg und auf das Tier zu (S-Neurone).3.Innerhalb einer senkrecht zur Oberfläche des Colliculus verlaufenden Penetrationssäule nahm die Feldgröße bei gleichbleibender Feldposition mit zunehmender Tiefe zu. Zwischen Ableitort und Feldposition bestand eine systematische retinotopische Beziehung. Die Projektion des vertikalen O-Meridians des Gesichtsfeldes verlief im rostralen Drittel des Colliculus von medial nach lateral, die des horizontalen O-Meridians in der Mitte des Colliculus von rostral nach caudal. Das Projektionsschema eines Colliculus enthält einen nasalen Teil der ipsilateralen Gesichtsfeldhälfte.4.Im Praetectum verlief die Projektion vertikaler Meridiane am caudalen Ende von medial nach lateral und überlappte sich teilweise mit dem Projektionsgebiet des vertikalen O-Meridians im Colliculus. Die horizontalen Meridiane verliefen so von caudal nach rostral, daß das Projektionsschema des Praetectums spiegelbildlich zu dem des Colliculus superior angeordnet war. Dieses Projektionsschema galt nur für den Nucleus tractus optici und die Area praetectalis. Die übrigen praetectalen Kerne mit zum Teil sehr großen rezeptiven Feldern und spezifischen Reaktionsweisen erhielten keine retinotopische Projektion.5.Rezeptive Felder der oberflächennahen Schichten waren uniform on-, off-oder on-off strukturiert, Felder tiefergelegener Einheiten waren ungeordnet aus on-, off- und on-off Bezirken zusammengesetzt. Binocular erregbare Neurone zeigten für beide Augen gleiche Position und Struktur der rezeptiven Felder.6.Die Ergebnisse wurden mit den an anderen Tierarten erhobenen Befunden verglichen. Ihre mögliche funktionelle Bedeutung wurde diskutiert.

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Retinotopic relationship and structure of receptive fields in the optic tectum and pretectum of the cat

Summary 1.600 neurons of the cat's superior colliculus and pretectum were recorded and marked with stainless-steel microelectrodes. The position and structure of receptive fields were tested with stationary flickering and moving stimuli. The position of the stimuli in the visual field was determined by the direction of the lamp projecting the light-points because animal and lamp were arranged in a fixed relationship to the screen. The positions of the stimuli were described in a coordinate system based on the horizontal-and vertical zeromeridean of the retina.2.About 55% of tectal neurons are directionally selective and signal mainly movements directed to the periphery of the visual field. Neurons of the pretectum have the same response characteristics as neurons of the superior colliculus but in addition some are selectively responsive to movements towards the animal or away from it (S-neurons).3.Neurons in one functional column (diameter 0.5 mm, length 3.6 mm) perpendicular to the surface of the superior colliculus react to the same position and preferred direction of a moving stimulus. The size, complexity and directional selectivity of the receptive fields increase with the depth of the recorded neurons. The projection of the vertical zero-meridean passes across the rostral part of the colliculus but does not form the rostral border of the superior colliculus. The nasal part of the ipsilateral visual field projects to the most rostral part of the superior colliculus. The projection of the horizontal zeromeridean passes rostro-caudally in a nearly sagittal plane down the middle of the colliculus. Along this projection-line the resolving power is 13°/column in the caudal part and 6°/column in the rostral part of the superior colliculus. The size of the receptive fields increase with their excentricity in the visual field. (Average of field diameters: 26±13°).4.The diameter of receptive fields in the pretectum was 21±11°, except for a few very large fields (70° and larger). Along the medio-lateral axis of the pretectum there was a retinotopic organization identical to that in the colliculus. Along the caudo-rostral axis, the retinotopic organization was the mirror image of that in the colliculus. No retinotopic organization was observed in the so-called deep pretectal nucleus or in the nucleus of the posterior commissure. Neurons of these nuclei may represent more complex levels in the visual pathway.5.The more superficial neurons of the colliculus (0.1–1.8 mm deep) react mainly with uniform on-, off- or on-off responses to stationary flickered stimuli, i.e. their receptive fields (7–20° in diameter) are uniformly on-, off- or on-off. The deeper neurons (2 mm and deeper) have receptive fields (20–40° in diameter) with compound but not antagonistic structure. No receptive fields showed on- or off-inhibition. Binocularly driven neurons have the same position and structure of their receptive fields for both eyes.6.A survey of the literature reveals that all vertebrates so far investigated show small differences in the destination and retinotopic organization of their retinofugal fibre projections and in the types of tectal receptive fields. These differences seem to indicate an adaption to the development of binocular representation of the center of the visual field, of a specialized area of the retina and of a retino-cortical system.

     

AdaptivSearch: A Novel Iterative Algorithm for the Generation of n-dimensional Hypersurfaces Using an Adaptive Numerical Strategy

AdaptivSearch is the first adaptive strategy based algorithm for the rational and economical construction of n-dimensional hypersurfaces. AdaptivSearch works iteratively: At each step it parcels out the definition range into several triangles, evaluates the worst according to a built-in error criterion, and refines the approximation to the unknown function by choosing the barycenter of this partial area as the node to be calculated next. Based upon the error criterion, AdaptivSearch selectively approaches those parts of the hypersurface in which the curvature exhibits the strongest changes. Some examples of AdaptivSearch applications for both analytical functions and chemical model surfaces are given in order to demonstrate the behavior of the algorithm. These show its broad applicability and the usefulness, especially for chemical problems.     

Insertion of N-linked glycosylation sites in the variable regions of the human immunodeficiency virus type 1 surface glycoprotein through AAT triplet reiteration.

Variable regions with sequence length variation in the human immunodeficiency virus type 1 envelope exhibit an unusual pattern of codon usage with AAT, ACT, and AGT together composing > 70% of all codons used. We postulate that this distribution is caused by insertion of AAT triplets followed by point mutations and selection. Accumulation of the encoded amino acids (asparagine, serine, and threonine) leads to the creation of new N-linked glycosylation sites, which helps the virus to escape from the immune pressure exerted by virus-neutralizing antibodies.     

A large, dominant pedigree of atrioventricular septal defect (AVSD): exclusion from the Down syndrome critical region on chromosome 21.

We describe a large pedigree of individuals with autosomal dominant atrioventricular septal defect (AVSD). The pedigree includes affected individuals and individuals who have transmitted the defect but are not clinically affected. AVSDs are a rare congenital heart malformation that occurs as only 2.8% of isolated cardiac lesions. They are the predominant heart defect in children with Down syndrome, making chromosome 21 a candidate for genes involved in atrioventricular septal development. We have carried out a linkage study in the pedigree by using 10 simple-sequence polymorphisms from chromosome 21. Multipoint linkage analysis gives lod scores of less than -2 for the region of trisomy 21 associated with heart defects, which excludes a locus within this region as the cause of the defect in this family.     

Mammal use of riparian corridors in semi-arid Sonora,Mexico

Wildlife populations in semi-arid regions are increasingly challenged by human activities and dependent on the connectivity of riparian corridors for access to surface water. The Madrean Archipelago is a biodiversity hotspot along the arid United States–Mexico borderlands that support both Neotropical and Nearctic wildlife. Infrastructure development (e.g., the border wall and the expansion of Mexican Federal Highway 2) in this region inhibits wildlife movement along the transnational mountain archipelago by disconnecting habitat. To explore the relationship between habitat variables and mammal use of riparian corridors in northern Sonora, Mexico, we collected data from 19 motion-sensitive cameras between October 2018 and April 2019 and used single-season occupancy models and Royle-Nichols abundance estimation models to analyze our data. We recorded 21 species of mammals, including the first sighting of jaguar (Panthera onca) in this region in 25 years. River characteristics (distance from river, riparian corridor width, water availability), remoteness (distance from highway, productivity, elevation), and topographic variety (vertical elevation difference) influenced patterns of occupancy probability and estimated abundance of mammals >1 kg, but the strength and direction of these relationships varied by species. Additionally, intermittently wet desert washes were comparable in species richness to the perennial system. These results highlight the importance of examining physical and biological aspects of habitat. This is especially true when identifying corridors where mitigation structures should be placed to improve wildlife connectivity in biodiversity hotspots like the Madrean Archipelago and semi-arid ecosystems worldwide.