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Nripendra Vikram Singh Shilpa Parashuram Jyotsana Sharma Roopa Sowjanya Potlannagari Dhinesh Babu Karuppannan Ram Krishna Pal Prakash Patil Dhananjay M. Mundewadikar Vipul R. Sangnure P.V. Parvati Sai Arun Naresh V.R. Mutha Bipin Kumar Abhishek Tripathi Sathish Kumar Peddamma Harish Kothandaraman Sailu Yellaboina Dushyant Singh Baghel Umesh K. Reddy 《Saudi Journal of Biological Sciences》2020,27(12):3514-3528
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Patil Prakash G. Jamma Shivani M. Singh N. V. Bohra Abhishek Parashuram Shilpa Injal Archana S. Gargade Vaishali A. Chakranarayan Manasi G. Salutgi Unnati D. Dhinesh Babu K. Sharma Jyotsana 《Physiology and Molecular Biology of Plants》2020,26(6):1249-1261
Physiology and Molecular Biology of Plants - The present study investigates the genetic diversity and population structure among 42 diverse pomegranate genotypes using a set of twenty one class I... 相似文献
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Madar Jyoti M. Samundeeswari S. Holiyachi Megharaja Naik Nirmala S. Pawar Varsha Gudimani Parashuram Shastri Lokesh A. Kumbar Vijay M. Sunagar Vinay A. 《Russian Journal of Bioorganic Chemistry》2021,47(2):535-542
Russian Journal of Bioorganic Chemistry - The present work highlights the broad range of oxygen and nitrogen heterocycles and their applications in medicinal field. A facial approach has been... 相似文献
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Prakash G. Patil N. V. Singh Shilpa Parashuram Abhishek Bohra Dhanajay M. Mundewadikar Vipul R. Sangnure K. Dhinesh Babu Jyotsana Sharma 《Physiology and Molecular Biology of Plants》2020,26(4):683-696
A total of 17,439 mature miRNAs (~ 21 nt) earlier generated through RNA seq in the pomegranate were used for in silico analysis. After complexity reduction, a total of 1922 representative mature miRNAs were selected and used as query sequences against pomegranate genome to retrieve 2540 homologous contigs with flanking regions (~ 800). By using pre-miRNA prediction web server, a total of 1028 true contigs harbouring pri-miRNAs encoding 1162 pre-miRNAs were identified. Survey of these sequences for SSRs yielded a total of 1358 and 238 SSRs specific to pri-miRNA and pre-miRNAs, respectively. Of these, primer pairs were designed for 897 pri-miRNA and 168 pre-miRNA SSRs. In pri-miRNA sequences, hexa-nucleotides repeats were found to be most abundant (44.18%) followed by mono- (18.41%) and di-nucleotide (17.01%), which is also observed in pre-miRNA sequences. Further, a set of 51 randomly selected pre-miRNA-SSRs was examined for marker polymorphism. The experimental validation of these markers on eight pomegranate genotypes demonstrated 92.15% polymorphism. Utility of these functional markers was confirmed via examination of genetic diversity of 18 pomegranate genotypes using 15 miRNA-SSRs. Further, potential application of miRNA-SSRs for discovery of trait specific candidate genes was showed by validating 51 mature miRNA against publically available 2047 EST sequences of pomegranate by target and network analysis. In summary, the current study offers novel functional molecular markers for pomegranate genetic improvement. 相似文献
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