Mutations at the histidine 249 ligand profoundly alter the spectral and iron-binding properties of human serum transferrin N-lobe

Human serum transferrin is an iron-binding and -transport protein which carries iron from the blood stream into various cells. Iron is held in two deep clefts located in the N- and C-lobes by coordinating to four amino acid ligands, Asp 63, Tyr 95, Tyr 188, and His 249 (N-lobe numbering), and to two oxygens from carbonate. We have previously reported the effect on the iron-binding properties of the N-lobe following mutation of the ligands Asp 63, Tyr 95, and Tyr 188. Here we report the profound functional changes which result from mutating His 249 to Ala, Glu, or Gln. The results are consistent with studies done in lactoferrin which showed that the histidine ligand is critical for the stability of the iron-binding site [H. Nicholson, B. F. Anderson, T. Bland, S. C. Shewry, J. W. Tweedie, and E. N. Baker (1997) Biochemistry 36, 341-346]. In the mutant H249A, the histidine ligand is disabled, resulting in a dramatic reduction in the kinetic stability of the protein toward loss of iron. The H249E mutant releases iron three times faster than wild-type protein but shows significant changes in both EPR spectra and the binding of anion. This appears to be the net effect of the metal ligand substitution from a neutral histidine residue to a negative glutamate residue and the disruption of the "dilysine trigger" [MacGillivray, R. T. A., Bewley, M. C., Smith, C. A., He, Q.-Y., Mason, A. B., Woodworth, R. C., and Baker, E. N. (2000) Biochemistry 39, 1211-1216]. In the H249Q mutant, Gln 249 appears not to directly contact the iron, given the similarity in the spectroscopic properties and the lability of iron release of this mutant to the H249A mutant. Further evidence for this idea is provided by the preference of both the H249A and H249Q mutants for nitrilotriacetate rather than carbonate in binding iron, probably because NTA is able to provide a third ligation partner. An intermediate species has been identified during the kinetic interconversion between the NTA and carbonate complexes of the H249A mutant. Thus, mutation of the His 249 residue does not abolish iron binding to the transferrin N-lobe but leads to the appearance of novel iron-binding sites of varying structure and stability.     

First Report of Curtobacterium flaccumfaciens pv. flaccumfaciens Causing Cowpea Bacterial Wilt in Iran

During surveys in cowpea fields of Marand County, East Azerbaijan province, Iran, in the summer of 2013, a suspected bacterial disease was observed on cowpea leaves as tan spots and interveinal necrotic lesions surrounded by chlorotic margins. The disease was of high incidence where some fields had been fully destroyed and severity of the disease in some fields had reached up to 70%. Gram‐positive, yellow‐pigmented, coryneform bacteria were isolated from infected leaves. Pathogenicity of isolates was confirmed on 20‐day‐old cowpea (cv. Khoy) plants, and they were identified as Curtobacterium flaccumfaciens pv. flaccumfaciens based on biochemical test results confirmed using specific PCR primers. This is the first report of C. flaccumfaciens pv. flaccumfaciens, the causal agent of cowpea bacterial wilt in Iran.     

Phosphate Limitation Alters <Emphasis Type="Italic">Medicago–Sinorhizobium</Emphasis> Signaling: Flavonoid Synthesis and AHL Production

The legume plant Medicago truncatula Gaertn. can establish a symbiotic interaction with Sinorhizobium meliloti. One of the most limiting factors for symbiosis is phosphate (P) deficiency. Therefore, legumes and their symbiotic partners, rhizobia, have developed mechanisms to adapt to P restriction. In the non-symbiotic state, plants would up-regulate flavonoid biosynthesis via increasing the expression of chalcone synthase (chs), catalyzing the first step of flavonoid synthesis. Simultaneously, bacterial quorum sensing (QS) pathway can regulate the expression of certain genes involved in symbiotic functions of bacteria in response to P availability as well as bacterial population. Since both flavonoids and QS signaling molecules (N-acyl homoserine lactones, AHL) play important roles in the rhizobia-legume symbiosis, we evaluated these processes in the symbiotic state under different P concentrations and bacterial populations. In this study, by using real-time PCR and HPLC, we showed the expression of pt1 (phosphate transporter 1) and chs as well as luteolin production increased, in a time dependent manner, in plants following P limitation. Nod gene inducing flavonoids can up-regulate the bacterial QS pathway which results in an increase in AHL production, possibly to enhance symbiotic behaviors of rhizobia. It has been estimated that there is a feedback loop from bacterial AHL to flavonoid production pathway in legume plants.     

Transferrin, is a mixed chelate-protein ternary complex involved in the mechanism of iron uptake by serum-transferrin in vitro?

Iron uptake by transferrin from triacetohydroxamatoFe(III) (Fe(AHA)3) in the presence of bicarbonate has been investigated between pH 7 and 8.2. The protein transits from the opened apo- to the closed holoform by several steps with the accumulation of at least three kinetic intermediates. All these steps are accompanied by proton losses, probably occurring from the protein ligands and the side-chains involved in the interdomain H-bonding nets. The minor bihydroxamatoFe(III) species Fe(AHA)2 exchanges its iron with the C-site of apotransferrin in interaction with bicarbonate without detectable formation of any intermediate protein-iron-ligand mixed complex; direct second-order rate constant k1=4.15(+/-0.05)x10(7) M(-1) s(-1). The kinetic product loses a single proton and undergoes a modification in its conformation followed by the loss of two or three protons; first-order rate constant k2=3.25(+/-0.15) s(-1). This induces a new modification in the conformation; first-order rate constant k3=5.90(+/-0.30)x10(-2) s(-1). This new modification in conformation rate controls iron uptake by the N-site of the protein and is followed by a single proton loss; K3a=6.80 nM. Finally, the holoprotein or the monoferric transferrin in its thermodynamic equilibrated state is produced by a last modification in the conformation occurring in about 4000 seconds. But for the Fe(AHA)3 dissociation and the involvement of Fe(AHA)2 in the first step of iron uptake, this mechanism is identical to that reported for iron uptake from FeNAc3. This implies that the exchange of iron between a chelate and serum-transferrin occurs by a single general mechanism. The nature of the iron-providing chelate is only important for the first kinetic step of the exchange, which can be slowed to such an extent that it rate limits the exchange of iron.     

An analysis of the reliability phenomenon in the FitzHugh-Nagumo model

The reliability of single neurons on realistic stimuli has been experimentally confirmed in a wide variety of animal preparations. We present a theoretical study of the reliability phenomenon in the FitzHugh-Nagumo model on white Gaussian stimulation. The analysis of the model's dynamics is performed in three regimes—the excitable, bistable, and oscillatory ones. We use tools from the random dynamical systems theory, such as the pullbacks and the estimation of the Lyapunov exponents and rotation number. The results show that for most stimulus intensities, trajectories converge to a single stochastic equilibrium point, and the leading Lyapunov exponent is negative. Consequently, in these regimes the discharge times are reliable in the sense that repeated presentation of the same aperiodic input segment evokes similar firing times after some transient time. Surprisingly, for a certain range of stimulus intensities, unreliable firing is observed due to the onset of stochastic chaos, as indicated by the estimated positive leading Lyapunov exponents. For this range of stimulus intensities, stochastic chaos occurs in the bistable regime and also expands in adjacent parts of the excitable and oscillating regimes. The obtained results are valuable in the explanation of experimental observations concerning the reliability of neurons stimulated with broad-band Gaussian inputs. They reveal two distinct neuronal response types. In the regime where the first Lyapunov has negative values, such inputs eventually lead neurons to reliable firing, and this suggests that any observed variance of firing times in reliability experiments is mainly due to internal noise. In the regime with positive Lyapunov exponents, the source of unreliable firing is stochastic chaos, a novel phenomenon in the reliability literature, whose origin and function need further investigation.     

Analysis of models for crustacean stretch receptors

 The mechanisms underlying the diverse responses to step current stimuli of models [Edman et al. (1987) J Physiol (Lond) 384: 649–669] of lobster slowly adapting stretch receptor organs (SAO) and fast-adapting stretch receptor organs (FAO) are analyzed. In response to a step current, the models display three distinct types of firing reflecting the level of adaptation to the stimulation. Low-amplitude currents evoke transient firing containing one to several action potentials before the system stabilizes to a resting state. Conversely, high-amplitude stimulations induce a high frequency transient burst that can last several seconds before the model returns to its quiescent state. In the SAO model, the transition between the two regimes is characterized by a sustained pacemaker firing at an intermediate stimulation amplitude. The FAO model does not exhibit such a maintained firing; rather, the duration of the transient firing increases at first with the stimulus intensity, goes through a maximum and then decreases at larger intensities. Both models comprise seven variables representing the membrane potential, the sodium fast activation, fast inactivation, slow inactivation, the potassium fast activation, slow inactivation gating variables, and the intra cellular sodium concentration. To elucidate the mechanisms of the firing adaptations, the seven-variable model for the lobster stretch receptor neuron is first reduced to a three-dimensional system by regrouping variables with similar time scales. More precisely, we substituted the membrane potential V for the sodium fast activation equivalent potential V _m , the potassium fast inactivation V _n for the sodium fast inactivation V _h , and the sodium slow inactivation V _l for the potassium slow inactivation V _r . Comparison of the responses of the reduced models to those of the original models revealed that the main behaviors of the system were preserved in the reduction process. We classified the different types of responses of the reduced SAO and FAO models to constant current stimulation. We analyzed the transient and stationary responses of the reduced models by constructing bifurcation diagrams representing the qualitatively distinct dynamics of the models and the transitions between them. These revealed that (1) the transient firings prior to reaching the stationary state can be accounted for by the sodium slow inactivation evolving more slowly than the other two variables, so that the changes during the transient firings reflect the bifurcations that the two-dimensional system undergoes when the sodium slow inactivation, considered as a parameter, is varied; and (2) the stationary behaviors of the models are captured by the standard bifurcations of a two-dimensional system formed by the membrane potential and the potassium fast inactivation. We found that each type of firing and the transitions between them is due to the interplay between essentially three variables: two fast ones accounting for the action potential generation and the post-discharge refractoriness, and a third slow one representing the adaptation. Received: 28 February 2000 / Accepted in revised form: 4 October 2000     

Variability of the electric organ discharge interval duration in resting Gymnotus carapo

 We recorded the electric organ discharges of resting Gymnotus carapo specimens. We analyzed the time series formed by the sequence of interdischarge intervals. Nonlinear prediction, false nearest neighbor analyses, and comparison between the performance of nonlinear and linear autoregressive models fitted to the data indicated that nonlinear correlations between intervals were absent, or were present to a minor extent only. Following these analyses, we showed that linear autoregressive models with combined Gaussian and shot noise reproduced the variability and correlations of the resting discharge pattern. We discuss the implications of our findings for the mechanisms underlying the timing of electric organ discharge generation. We also argue that autoregressive models can be used to evaluate the changes arising during a wide variety of behaviors, such as the modification in the discharge intervals during interaction between fish pairs. Received: 14 March 2000 / Accepted in revised form: 9 October 2000     

Evolution of aging: individual life history trade‐offs and population heterogeneity account for mortality patterns across species

A broad range of mortality patterns has been documented across species, some even including decreasing mortality over age. Whether there exist a common denominator to explain both similarities and differences in these mortality patterns remains an open question. The disposable soma theory, an evolutionary theory of aging, proposes that universal intracellular trade‐offs between maintenance/lifespan and reproduction would drive aging across species. The disposable soma theory has provided numerous insights concerning aging processes in single individuals. Yet, which specific population mortality patterns it can lead to is still largely unexplored. In this article, we propose a model exploring the mortality patterns which emerge from an evolutionary process including only the disposable soma theory core principles. We adapt a well‐known model of genomic evolution to show that mortality curves producing a kink or mid‐life plateaus derive from a common minimal evolutionary framework. These mortality shapes qualitatively correspond to those of Drosophila melanogaster, Caenorhabditis elegans, medflies, yeasts and humans. Species evolved in silico especially differ in their population diversity of maintenance strategies, which itself emerges as an adaptation to the environment over generations. Based on this integrative framework, we also derive predictions and interpretations concerning the effects of diet changes and heat‐shock treatments on mortality patterns.     

Analysis of the jamming avoidance response in the electric fish Gymnotus carapo

The electric fish Gymnotus carapo emits brief (4 ms) electric pulses separated by much longer intervals of high regularity (coefficient of variation 0.01–0.02). Two main changes in the firing patterns of electric organ discharge were observed when two fish were placed together. (1) All fish pairs showed an increase in the frequency difference between the two fish, in comparison with the value observed in isolated fish, prior to the interaction. This change increased the number of beats per second between both discharge trains, i.e., the number of times per second that the higher rate discharge sweeps the lower rate one when displayed on an oscilloscope. (2) When the sweeping velocity fell below 2–3 sweeps/s, transient frequency increases were also observed in the electric organ discharge of the higher rate fish when they were about to discharge simultaneously. The contribution to jamming avoidance of these two changes was analyzed by comparing recordings of behavioral interactions with simulations produced by a computational model. The jamming effect of the firing of a conspecific located in the same tank was evaluated by counting the number of coincidences between both trains (occurrence of discharges of the two fish within 2 ms of one another). The number of coincidences was evaluated as a function of the sweeping velocity in both simulations (with and without transient frequency increases) and real fish. As the sweeping velocity increased, single coincidences increased slightly in simulations without transient frequency increases, whereas the successive coincidences (coincidences repeated in successive discharges) decreased abruptly. The simulation including transient frequency increases eliminated the successive coincidences and decreased the single ones. Only when the sweeping velocity was less than 2–3 sweeps/s, did transient frequency increases improve the coincidence-avoiding performance of the simulation. The number of coincidences observed in natural behavioral interactions for the different sweeping velocities coincided with the distributions obtained with the simulations. As successive coincidences are known to be more detrimental for electrolocation than single ones, the increase in the sweeping velocity may be considered a jamming avoidance strategy in Gymnotus carapo, in addition to the already described transient frequency increases. Received: 2 June 1998 / Accepted in revised form: 18 November 1998