Crystal structure of human PACRG in complex with MEIG1 reveals roles in axoneme formation and tubulin binding

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Ammonium photo-production by heterocytous cyanobacteria: potentials and constraints

Over the last decades, production of microalgae and cyanobacteria has been developed for several applications, including novel foods, cosmetic ingredients and more recently biofuel. The sustainability of these promising developments can be hindered by some constraints, such as water and nutrient footprints. This review surveys data on N₂-fixing cyanobacteria for biomass production and ways to induce and improve the excretion of ammonium within cultures under aerobic conditions. The nitrogenase complex is oxygen sensitive. Nevertheless, nitrogen fixation occurs under oxic conditions due to cyanobacteria-specific characteristics. For instance, in some cyanobacteria, the vegetative cell differentiation in heterocyts provides a well-adapted anaerobic microenvironment for nitrogenase protection. Therefore, cell cultures of oxygenic cyanobacteria have been grown in laboratory and pilot photobioreactors (Dasgupta et al., 2010; Fontes et al., 1987; Moreno et al., 2003; Nayak & Das, 2013). Biomass production under diazotrophic conditions has been shown to be controlled by environmental factors such as light intensity, temperature, aeration rate, and inorganic carbon concentration, also, more specifically, by the concentration of dissolved oxygen in the culture medium. Currently, there is little information regarding the production of extracellular ammonium by heterocytous cyanobacteria. This review compares the available data on maximum ammonium concentrations and analyses the specific rate production in cultures grown as free or immobilized filamentous cyanobacteria. Extracellular production of ammonium could be coupled, as suggested by recent research on non-diazotrophic cyanobacteria, to that of other high value metabolites. There is little information available regarding the possibility for using diazotrophic cyanobacteria as cellular factories may be in regard of the constraints due to nitrogen fixation.     

Variation in N2 fixation,N and P contents of mycorrhizalVigna unguiculata in relation to the progressive development of extraradical hyphae ofGlomus mosseae

Summary Vigna unguiculata cv. 58–185 grown in a sterile Dek soil was inoculated withRhizobium sp. orRhizobium sp. plusGlomus mosseae. Response of the host plant to the treatments was estimated by periodic measurements of shoot and nodule dry weights, N₂ fixation (C₂H₂ reduction activity) and N and P contents up to the 50th day of the growth cycle. It was only 45 days after planting that shoot dry weight of dually inoculated plants differed significantly from that of plants inoculated withRhizobium sp. alone. Nodule dry weight and N₂ fixation of dually inoculated plants were significantly higher than those of plants inoculated withRhizobium sp. alone from day 20 after planting, but there was no significant difference in N content (%). During the first 20 days, shoot P content (%) of both sets of plants decreased progressively, P content of dually inoculated plants being lower than that of the others. Later, P content of dually inoculated plants increased rapidly whereas P content of the other plants remained constant. Increase in nodule dry weight, N₂ fixation and P content of dually inoculated plants corresponded to the onset of the development of the extra-radical hyphae ofGlomus mosseae. In the rhizosphere.

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Resumen Se cultivóVigna unguiculata cv. 58–185 en un suelo estéril tipo Dek, se inoculó conRhizobium sp. o conRhizobium sp. másGlomus mosseae. La respuesta de la planta huésped a los tratamientos se estudió midiendo periodicamente el peso seco de la parte aerea y de los nódulos, la fijación de N (actividad reductora de C₂H₂) y los contenidos de N y P hasta el 50° día del ciclo de crecimiento. La diferencia entre el peso seco de la parte aerea de las plantas con doble inoculación y aquellas inoculadas conRhizobium sp. unicamente, no fue significativa hasta 45 días despúés de la siembra. A los 20 días de la siembra tanto el peso seco de los nódulos como la fijación de nitrógeno de las plantas con doble inoculación eran significativamente superiores a los valores obtenidos para las plantas con soloRhizobium sp., aunque no se observaron diferencias en el contenido en N (%). Durante los primeros 20 días del ciclo el contenido en P (%) de ambos grupos de plantas disminuyó progresivamente, siendo los valores obtenidos por las plantas con doble inoculación inferiores a los de las demás. Más tarde el contenido en P de las plantas con doble inoculación aumentó rapidamente manteniéndose constante el de las demás. El incremento en el peso seco de los nódulos, en la fijación de N y en el contenido en P de las plantas con doble inoculación se correspondió con el inicio del desarrollo de las hifas extraradiculares deGlomus mosseae.

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Résumé On a inoculéV. unguiculata poussant dans un sol Dek stérile avecRhizobium etRhizobium plusGlomus mosseae. On a recherché la réponse de la plante-hôte à ces deux traitements en estimant périodiquement les poids des nodules et des parties aériennes de la plante, la fixation d'azote (activité réductrice de C₂H₂), les teneurs en N et P jusqu'au 50^e jour du cycle de végétation. C'est seulement au 45^e jour après la plantation que le poids sec des parties aériennes des plantes inoculées avec deux symbiotes (plantes doublement inoculées) diffère significativement de celui des plantes inoculées avec Rhizobium seul. Le poids sec des nodules et la fixation N₂ des plantes doublement inoculées sont significativement plus élevés que ceux des plantes inoculées avecRhizobium seul au 20^e jour après la plantation mais il n'y a pas de différence significative pour la teneur en N (%). Pendant les 20 premiers jours, la teneur en P (%) des parties aériennes des deux catégories de plantes décroit progressivement; la teneur en P des plantes doublement inoculées est plus faible que celle des plantes inoculées seulement avecRhizobium. Plus tard, la teneur en P des plantes doublement inoculées augmente rapidement tandis que celle des autres plantes reste constante. L'accroissement du poids sec des nodules, de la fixation d'azote et de la teneur en P observé chez les plantes doublement inoculées correspond au démarrage du développement des hyphes extra-radicales deGlomus mosseae dans la rhizosphère.

     

IR vibrational CD in model deoxyoligonucleotides: observation of the B----Z phase transition and extended coupled oscillator intensity calculations

The first observation of ir vibrational CD (VCD) in small model DNA molecules is reported. The VCD signals in the 1550-1750-cm-1 spectral region, which originate from coupling of carbonyl stretching modes of the nucleic acid bases, are found to be sensitive to the handedness of the polymer helix. The formalism to calculate VCD intensities of polymers is developed from the exciton model derived earlier by Tinoco [(1963) Radiation Res. 20, 133; (1960) J. Chem. Phys. 33, 1332; (1964) J. Am. Chem. Soc. 86, 297] and Schellman and co-workers [(1975) Biopolymers 14, 173; (1969) J. Phys. Chem. 73, 28]. The resulting equations, which are a direct extension of the dimeric case known as the "coupled oscillator," are used in model calculations of the helical polymers.     

Differential DNA binding of nuclear proteins to a long terminal repeat region of the MCF13 and Akv murine leukemia viruses.

Long terminal repeat (LTR) sequences of murine leukemia viruses (MLVs) have been demonstrated to be mainly responsible for the pathogenic differences in these retroviruses. A region of the LTR which is downstream of the enhancer elements has been shown to contribute both to enhancer activity as well as to disease specificity of MLVs. We have identified protein-DNA complexes generated by this region of a lymphomagenic MLV (MCF13) and one which is nonpathogenic (Akv). One protein-DNA complex we have observed for this region is unique to MCF13 DNA sequences. Detection of protein involved in this unique MCF13 complex in different cell lines revealed that it was ubiquitous.     

Inhibition of nitric oxide synthesis increases mortality in Sindbis virus encephalitis.

Sindbis virus (SV) is an alphavirus that causes acute encephalomyelitis in mice. The outcome is determined by the strain of virus and by the age and genetic background of the host. The mortality rates after infection with NSV, a neurovirulent strain of SV, were as follows v: 81% (17 of 21) in BALB/cJ mice; 20% (4 of 20) in BALB/cByJ mice (P < 0.001); 100% in A/J, C57BL/6J, SJL, and DBA mice; and 79% (11 of 14) in immunodeficient scid/CB17 mice. Treatment with Nomega-nitro-L-arginine methyl ester (L-NAME), a nitric oxide synthetase (NOS) inhibitor, increased mortality to 100% (P < 0.05) in NSV-infected BALB/cJ mice, to 95% (P < 0.001) in BALB/cByJ mice, and to 100% in scid/CB17 mice. BALB/cJ and BALB/cByJ mice had similar levels of inducible NOS mRNA in their brains, which were not affected by L-NAME or NSV infection. Brain NOS activity was similar in BALB/cJ and BALB/cByJ mice before and after infection and was markedly inhibited by L-NAME. NSV replication in the brains of BALB/cJ mice, BALB/cByJ mice, and mice treated with L-NAME was similar. Treatment of N18 neuroblastoma cells with NO donors S-nitroso-N-acetylpenicillamine or sodium nitroprusside in vitro before infection increased cell viability at 42 to 48 h compared with untreated NSV-infected N18 cells with little effect on virus replication. These data suggest that NO protects mice from fatal encephalitis by a mechanism that does not directly involve the immune response or inhibition of virus growth but rather may enhance survival of the infected neuron until the immune response can control virus replication.     

Selection of Bradyrhizobium strains and provenances of Acacia mangium and Faidherbia albida: Relationship with their tolerance to acidity and aluminium

This work was designed to determine the role of the acidity and aluminium stress in the selection of partners in the Acacia symbioses with relevance to the persistence of the microsymbiont Bradyrhizobium in the soil and the growth and nodulation of the host plant respectively. Fifteen strains of Bradyrhizobium from Acacia mangium and Faidherbia albida formed a very homogenous acid tolerant group as indicated by their ability to grow better in a medium at pH 4.5 than in a medium at pH 6.8. By contrast, a growth experiment using an acid liquid media (pH 4.5), containing different concentrations of aluminium successfully identified strains sensitive to aluminium toxicity and those able to grow even in the presence of 100 M AlCl₃.Our results suggest that high amounts of aluminium in the soil rather than acidity (pH 4.5) were a major soil factor for selection of Bradyrhizobium strains capable of establishing a permanently high population under natural conditions.Unlike the behaviour of the microsymbiont, growth and nodulation of Acacia mangium and Faidherbia albida were not affected by aluminium, even at 100 M, but they might be significantly affected by medium acidity (pH 4.5) depending on plant provenances. It is therefore suggested that ability of the host plant to tolerate acidity stress should be taken into account first when screening effective Acacia-Bradyrhizobium combinations for use in afforestation trials.     

Strategies for the computation of infrared CD and absorption spectra of biological molecules: ribonucleic acids.

We report observed and computed infrared (vibrational) circular dichroism spectra of a number of polyribonucleic acids in aqueous solutions in the 1600-1750 cm-1 spectral region, in which C = O and some nucleotide base ring stretching vibrations occur. The experimental data are compared with results calculated using different levels of sophistication within the exciton approach. We find that observed band shapes are generally well reproduced by these models, particularly if care is taken to determine the direction of the vibrational dipole transition moments accurately.     

New Isopropyl Chromone and Flavanone Glucoside Compounds from the Leaves of Syzygium cerasiforme (Blume) Merr. & L.M.Perry and Their Inhibition of Nitric Oxide Production

A new isopropyl chromone ( 1 ) and a new flavanone glucoside ( 2 ) together with eleven known compounds ( 3–13 ) were isolated from the leaves of Syzygium cerasiforme (Blume) Merr. & L.M.Perry. Their structures were elucidated as 5,7-dihydroxy-2-isopropyl-6,8-dimethyl-4H-chromen-4-one ( 1 ), 5,7-dihydroxyflavanone 7-O-β-D-(6′′-O-galloylglucopyranoside) ( 2 ), strobopinin ( 3 ), demethoxymatteucinol ( 4 ), pinocembrin-7-O-β-D-glucopyranoside ( 5 ), (2S)-hydroxynaringenin-7-O-β-D-glucopyranoside ( 6 ), afzelin ( 7 ), quercetin ( 8 ), kaplanin ( 9 ), endoperoxide G3 ( 10 ), grasshopper ( 11 ), vomifoliol ( 12 ), litseagermacrane ( 13 ) by the analysis of HR-ESI-MS, NMR, and CD spectral data. Compounds 1 , 2 , 5 , 6 and 10 inhibited NO production on LPS-activated RAW264.7 cells with IC₅₀ values of 12.28±1.15, 8.52±1.62, 7.68±0.87, 9.67±0.57, and 6.69±0.34 μM, respectively, while the IC₅₀ values of the other compounds ranging from 33.38±0.78 to 86.51±2.98 μM, compared to that of the positive control, N^G-monomethyl-L-arginine acetate (L-NMMA) with an IC₅₀ value of 32.50±1.00 μM.