Phytochrome A Function in Red Light Sensing

Light signals perceived by the phytochrome family of red (R) and far-red (FR) light-absorbing photoreceptors direct plant growth and development throughout their lifecycle. In contrast to other family members, phyA displays rapid light-induced proteolytic degradation upon conversion to the biologically active Pfr form and mediates high irradiance responses to continuous FR. These unique properties together with limited examples of phyA function in R have resulted in an over-simplified portrayal of phyA as a FR sensor which acts predominantly in seed germination and early stages of seedling de-etiolation. In a recent work, published in The Plant Journal, we report significant phyA activity in Arabidopsis thaliana at high (>100 µmolm⁻²s⁻¹) photon irradiances of R. Under these conditions, we observed retarded degradation of a pool of nuclear-localised phyA, consistent with the phenomenon of photoprotection, and showed phyBphyCphyDphyE quadruple null mutants, containing only functional phyA, to de-etiolate and survive to flowering. The photon irradiances used in this study were greater than those routinely used for photomorphogenic analysis in the laboratory but considerably lower than those commonly observed in daylight. In this addendum we present additional analyses of the phyBphyCphyDphyE mutant and discuss the possibility that phyA may perform a significant role in the growth and development of daylight-grown plants.Key Words: phytochrome A, red light, irradiance, hypocotyl, cotyledon, photoprotection     

The design of a novel context-aware policy model to support machine-based learning and reasoning

The purpose of autonomic networking is to manage the business and technical complexity of networked components and systems. However, the lack of a common lingua franca makes it impossible to use vendor-specific network management data to ascertain the state of the network at any given time. Furthermore, the tools used to analyze management data are all different, and hence require different data in different formats. This complicates the construction of context from diverse information sources. This paper describes a new version of the DEN-ng context-aware policy model, which is part of the FOCALE autonomic network architecture. This model has been built using three guiding principles: (1) both the context model and the policy model are rooted in information models, so that they can govern managed entities, (2) each model is expressly constructed to facilitate the generation of ontologies, so that reasoning about policies constructed from the model may be done, and (3) the model is expressly constructed so that a policy language that supports machine-based reasoning and learning can be developed from it.

Light and temperature signal crosstalk in plant development

Light and temperature are two of the most important environmental stimuli regulating plant development. Recent advances have suggested considerable interaction between these signalling pathways at the molecular level. Studies of both flowering and germination have shown the phytochrome family of plant photoreceptors to display altered functional hierarchies at different growth temperatures. The existence of common signalling components in both light and temperature sensing has additionally been proposed. More recently, light quality signals have been shown to regulate plant-freezing tolerance in an ambient temperature-dependent manner. Together, these data suggest that complex crosstalk between light-signalling and temperature-signalling pathways is fundamental to the growth and development of plants in natural environments.     

Mutant analyses define multiple roles for phytochrome C in Arabidopsis photomorphogenesis

The analysis of Arabidopsis mutants deficient in the A, B, D, and E phytochromes has revealed that each of these phytochrome isoforms has both distinct and overlapping roles throughout plant photomorphogenesis. Although overexpression studies of phytochrome C (phyC) have suggested photomorphogenic roles for this receptor, conclusive evidence of function has been lacking as a result of the absence of mutants in the PHYC locus. Here, we describe the isolation of a T-DNA insertion mutant of phyC (phyC-1), the subsequent creation of mutant lines deficient in multiple phytochrome combinations, and the physiological characterization of these lines. In addition to operating as a weak red light sensor, phyC may perform a significant role in the modulation of other photoreceptors. phyA and phyC appear to act redundantly to modulate the phyB-mediated inhibition of hypocotyl elongation in red light and to function together to regulate rosette leaf morphology. In addition, phyC performs a significant role in the modulation of blue light sensing. Several of these phenotypes are supported by the parallel analysis of a quadruple mutant deficient in phytochromes A, B, D, and E, which thus contains only active phyC. Together, these data suggest that phyC has multiple functions throughout plant development that may include working as a coactivator with other phytochromes and the cryptochrome blue light receptors.     

The signal transducing photoreceptors of plants

Light signals are amongst the most important environmental cues regulating plant development. In addition to light quantity, plants measure the quality, direction and periodicity of incident light and use the information to optimise growth and development to the prevailing environmental conditions. Red and far-red wavelengths are perceived by the photoreversible phytochrome family of photoreceptors, whilst the detection of blue and ultraviolet (UV)-A wavelengths is conferred by the cryptochromes and phototropins. Higher plants contain multiple discrete phytochromes, the apoproteins of which are encoded by a small divergent gene family. In Arabidopsis, two cryptochrome and two phototropin family members have been identified and characterized. Photoreceptor action regulates development throughout the lifecycle of plants, from seed germination through to architecture of the mature plant and the onset of reproduction. The roles of individual photoreceptors in mediating plant development have, however, often been confounded by redundant, synergistic and in some cases mutually antagonistic mechanisms of action. The isolation of mutants null for individual photoreceptors and the construction of mutants null for multiple photoreceptors have therefore been paramount in elucidating photoreceptor functions. Photoreceptor action does not, however, operate in isolation from other signalling systems. The integration of light signals with other environmental cues enables plants to adapt their physiology to changing seasonal environments. This paper summarises current understanding of photoreceptor families and their functions throughout the lifecycle of plants. The integration of light signals with other environmental stimuli is also discussed.     

Temperature‐dependent shade avoidance involves the receptor‐like kinase ERECTA

Plants detect the presence of neighbouring vegetation by monitoring changes in the ratio of red (R) to far‐red (FR) wavelengths (R:FR) in ambient light. Reductions in R:FR are perceived by the phytochrome family of plant photoreceptors and initiate a suite of developmental responses termed the shade avoidance syndrome. These include increased elongation growth of stems and petioles, enabling plants to overtop competing vegetation. The majority of shade avoidance experiments are performed at standard laboratory growing temperatures (>20°C). In these conditions, elongation responses to low R:FR are often accompanied by reductions in leaf development and accumulation of plant biomass. Here we investigated shade avoidance responses at a cooler temperature (16°C). In these conditions, Arabidopsis thaliana displays considerable low R:FR‐mediated increases in leaf area, with reduced low R:FR‐mediated petiole elongation and leaf hyponasty responses. In Landsberg erecta, these strikingly different shade avoidance phenotypes are accompanied by increased leaf thickness, increased biomass and an altered metabolite profile. At 16°C, low R:FR treatment results in the accumulation of soluble sugars and metabolites associated with cold acclimation. Analyses of natural genetic variation in shade avoidance responses at 16°C have revealed a regulatory role for the receptor‐like kinase ERECTA.     

Climate change opens new frontiers for marine species in the Arctic: Current trends and future invasion risks

Climate change and increased anthropogenic activities are expected to elevate the potential of introducing nonindigenous species (NIS) into the Arctic. Yet, the knowledge base needed to identify gaps and priorities for NIS research and management is limited. Here, we reviewed primary introduction events to each ecoregion of the marine Arctic realm to identify temporal and spatial patterns, likely source regions of NIS, and the putative introduction pathways. We included 54 introduction events representing 34 unique NIS. The rate of NIS discovery ranged from zero to four species per year between 1960 and 2015. The Iceland Shelf had the greatest number of introduction events (n = 14), followed by the Barents Sea (n = 11), and the Norwegian Sea (n = 11). Sixteen of the 54 introduction records had no known origins. The majority of those with known source regions were attributed to the Northeast Atlantic and the Northwest Pacific, 19 and 14 records, respectively. Some introduction events were attributed to multiple possible pathways. For these introductions, vessels transferred the greatest number of aquatic NIS (39%) to the Arctic, followed by natural spread (30%) and aquaculture activities (25%). Similar trends were found for introductions attributed to a single pathway. The phyla Arthropoda and Ochrophyta had the highest number of recorded introduction events, with 19 and 12 records, respectively. Recommendations including vector management, horizon scanning, early detection, rapid response, and a pan‐Arctic biodiversity inventory are considered in this paper. Our study provides a comprehensive record of primary introductions of NIS for marine environments in the circumpolar Arctic and identifies knowledge gaps and opportunities for NIS research and management. Ecosystems worldwide will face dramatic changes in the coming decades due to global change. Our findings contribute to the knowledge base needed to address two aspects of global change—invasive species and climate change.