Influence of ionic strength on sodium-calcium exchange of two temperate climate soils

Salt-affected soils have been studied extensively with respect to their Na–Ca exchange properties. These studies have focused on soil environments of the arid West. However, because of irrigation and oil well brine discharges in the temperate region of the U.S. there is need to understand sodicity behavior of such soils. In this study, two Kentucky soils (Pembroke and Uniontown) at the 0–10 cm depth were studied to evaluate the influence of ionic strength (I) and sodium adsorption ratio (SAR) on cation selectivity coefficients. The data showed that both soils exhibit at least two classes of exchange sites and in general the apparent affinity for Na⁺ increased when solution ionic strength increased. Furthermore, both soils under all three ionic strengths tested showed greater affinity for Na⁺ than the average agricultural saline soil of the arid West. The data suggested the need for establishing critical salt dispersion thresholds for temperate climate soils and developing effective brine management approaches.     

Interaction of lambda Gam protein with the RecD subunit of RecBCD enzyme increases radioresistance of the wild-type Escherichia coli.

By making use of the gam(+)-plasmid, the so-called gam-dependent radioresistance was studied. This resistance is the result of the interaction between Gam protein (encoded by the gam gene of lambda) and RecBCD enzyme of Escherichia coli. gam-dependent radioresistance is observed in recB+ recC+ recD+ but not in recB+ recC+ recD- cells. It is suggested that Gam protein interacts specifically with the RecD subunit of RecBCD enzyme; the RecBC complex probably retains its activity in the presence of this viral protein.     

The effect of a Pro²⁸Thr point mutation on the local structure and stability of human galactokinase enzyme-a theoretical study

Galactokinase is responsible for the phosphorylation of α-d-galactose, which is an important step in the metabolism of the latter. Malfunctioning of galactokinase due to a single point mutation causes cataracts and, in serious cases, blindness. This paper reports a study of the Pro²⁸Thr point mutation using a variety of theories including molecular dynamics (MD), MM-PBSA/GBSA calculations and AIM analysis. Altered H-bonding networks were detected based on geometric and electron density criteria that resulted in local unfolding of the β-sheet secondary structure. Another consequence was the decrease in stability (5–7 kcal mol⁻¹) around this region, as confirmed by ΔG_bind calculations for the extracted part of the whole system. Local unfolding was verified by several other MD simulations performed with different duration, initial velocities and force field. Based on the results, we propose a possible mechanism for the unfolding caused by the Pro²⁸Thr point mutation.     

Interaction of RecBCD enzyme with DNA damaged by gamma radiation

Summary The DNA of a gene 2 mutant (T4 2 ^–) of phage T4 is degraded by RecBCD enzyme in the bacterial cytoplasm. Under normal conditions, recBCD ⁺ cells are therefore incapable of supporting the growth of phage T4 2 ^–. Only if the nucleolytic activity of RecBCD enzyme is absent from the cytoplasm are T4 2 ^–-infected bacteria able to form plaques. We found that recBCD ⁺ cells can form plaques if, before infection with T4 2 ^–, they have been exposed to gamma radiation. It is suggested that gamma ray-induced lesions of the bacterial DNA (e.g., double-strand breaks) bind RecBCD enzyme. This binding enables the enzyme to begin to degrade the bacterial chromosome, but simultaneously prevents its degradative action on the ends of minor DNA species, such as unprotected infecting phage chromosomes. Degradation of the chromosomal DNA, which occurs during the early postirradiation period, ceases about 60 min after gamma ray exposure. The reappearance of the nucleolytic action of RecBCD enzyme on T4 2 ^– DNA accompanies the cessation of degradation of bacterial DNA. Both, this cessation and the reappearance of the nucleolytic action of RecBCD enzyme on T4 2 ^– DNA depend on a functional recA gene product. These results suggest that postirradiation DNA degradation is controlled by the recA-dependent removal of RecBCD enzyme from the damaged chromosome. By making use of the temperature-sensitive mutant recB270, we showed that RecBCD-mediated repair of gamma ray-induced lesions occurs during the early postirradiation period, i.e. during postirradiation DNA degradation. It is shown that the RecD subunit of RecBCD enzyme also participates in this repair.     

Stability of Ca2+-, Cd2+-, Cu2+-[illite-humic] complexes and pH influence

Decomposition of fresh plant residues in soil is expected to produce humic fractions varying in molecular size. It was hypothesized that metal adsorption by soil, to some degree, will depend on humic acid content and molecular size. The latter is expected to vary in number and type of functional groups. In this study, illite-humic complexes were used to evaluate Ca²⁺, Cd²⁺, and Cu²⁺ adsorption and how this adsorption was affected by humic acids, differing in molecular size, under various pH values. Potentiometric titration using ion-selective electrodes with a stop-and-go procedure was employed to evaluate metal-[illite-humic] complex formation. The results showed that illite-humic complexes exhibited at least two types of metal-ion adsorption sites (low and high affinity) and molecular size of humic fractions had a large potential influence on total metal adsorption but a relatively smaller influence on metal-complex stability. Relative strength of metal-ion-[illite-humic] complexes followed the order of Cu²⁺>Cd²⁺>Ca²⁺ and were affected by pH, especially for low metal-ion affinity sites. Magnitude of metal-[illite-humic] stability constants, depending on molecular size of humic fraction and pH, varied on a log-scale from 3.52 to 4.21 for Ca²⁺, 4.38 to 5.18 for Cd²⁺and from 5.23 to 5.83 for Cu²⁺. There was an approximate 5-fold difference in these stability constants between the three different sizes of humic fractions. The larger the humic fraction, the lower the metal-[illite-humic] stability constant. This revised version was published online in June 2006 with corrections to the Cover Date. This revised version was published online in June 2006 with corrections to the Cover Date. This revised version was published online in June 2006 with corrections to the Cover Date.     

Composition and metal ion complexation behavour of humic fractions derived from corn tissue

Decomposition of fresh plant residues produces humic fractions with different molecular size and composition. It was hypothesized that the functional group-type and content of humic fractions depended on molecular size, which was expected to influence heavy-metal complexation behavior. In this study, corn (Zea maysL.) stalks and leaves were collected from the field and decomposed for an 8-month period to produce humic substances which were separated into three water soluble fractions, HF1, HF2 and HF3, from highest to lowest relative molecular size. Functional group determination showed that total, carboxylic and phenolic OH acidity increased as relative molecular size of humic fractions decreased. Furthermore, C/O ratios decreased, whereas N/C and H/C ratios remained relatively unaffected as relative molecular size of humic fractions decreased. Formation of Ca²⁺, Cd²⁺ and Cu²⁺ -humic fraction complexes and how these complexes were affected by pH and relative (humic fraction) molecular size were studied using potentiometric titration. Metal-humic complexes exhibited at least two types of sites with respect to Ca²⁺, Cd²⁺ and Cu²⁺ complexation. Relative molecular size had a large significant influence on total metal-ion complexation, but it had a relatively small influence on complex stability at low levels of metal-ion complexation. Strength of metal-ion humic complexes followed the order Cu²⁺ > Cd²⁺ > Ca²⁺ and was affected by pH, especially for low affinity sites. Carboxylic and phenolic OH groups were most likely involved in complex formation. Magnitude of the metal-humic formation constants at the lowest equilibrium metal-ion concentration, under the various pH values tested, varied from 5.39 to 5.90 for Ca²⁺, from 5.36 to 6.01 for Cd²⁺ and from 6.93 to 7.71 for Cu²⁺. Furthermore, the formation constants appeared to be positively influenced by decreasing molecular size of water-soluble humic fraction, and increasing pH. These results inferred that soil management practices causing build-up of humic substances would affect mobility and bioavailability of metal-ions.