Coherent modeling of longitudinal causal effects on binary outcomes

Analyses of biomedical studies often necessitate modeling longitudinal causal effects. The current focus on personalized medicine and effect heterogeneity makes this task even more challenging. Toward this end, structural nested mean models (SNMMs) are fundamental tools for studying heterogeneous treatment effects in longitudinal studies. However, when outcomes are binary, current methods for estimating multiplicative and additive SNMM parameters suffer from variation dependence between the causal parameters and the noncausal nuisance parameters. This leads to a series of difficulties in interpretation, estimation, and computation. These difficulties have hindered the uptake of SNMMs in biomedical practice, where binary outcomes are very common. We solve the variation dependence problem for the binary multiplicative SNMM via a reparameterization of the noncausal nuisance parameters. Our novel nuisance parameters are variation independent of the causal parameters, and hence allow for coherent modeling of heterogeneous effects from longitudinal studies with binary outcomes. Our parameterization also provides a key building block for flexible doubly robust estimation of the causal parameters. Along the way, we prove that an additive SNMM with binary outcomes does not admit a variation independent parameterization, thereby justifying the restriction to multiplicative SNMMs.     

Reliable Method for Fabricating Tissue‐Mimicking Materials With Designated Relative Permittivity and Conductivity at 128 MHz

Artificial materials that can simultaneously mimic the relative permittivity and conductivity of various human tissues are usually used in medical applications. However, the method of precisely designing these materials with designated values of both relative permittivity and conductivity at 3 T MRI resonance frequency is lacking. In this study, a reliable method is established to determine the compositions of artificial dielectric materials with designated relative permittivity and conductivity at 128 MHz. Sixty dielectric materials were produced using oil, sodium chloride, gelatin, and deionized water as the main raw materials. The dielectric properties of these dielectric materials were measured using the open‐ended coaxial line method at 128 MHz. Nonlinear least‐squares Marquardt–Levenberg algorithm was used to obtain the formula, establishing the relationship between the compositions of the dielectric materials and their dielectric properties at 128 MHz. The dielectric properties of the blood, gall bladder, muscle, skin, lung, and bone at 128 MHz were selected to verify the reliability of the obtained formula. For the obtained formula, the coefficient of determination and the expanded uncertainties with a coverage factor of k = 2 were 0.991% and 4.9% for relative permittivity and 0.992% and 6.4% for conductivity. For the obtained artificial materials measured using the open‐ended coaxial line method, the maximal difference of relative permittivity and conductivity were 1.0 and 0.02 S/m, respectively, with respect to the designated values. In conclusion, the compositions of tissue‐mimicking material can be quickly determined after the establishment of the formulas with the expanded uncertainties of less than 10%. Bioelectromagnetics. 2021;42:86–94. © 2020 Bioelectromagnetics Society.     

Identification and fine mapping of qRBSDV-6 MH , a major QTL for resistance to rice black-streaked dwarf virus disease

Rice black streaked-dwarf virus (RBSDV) disease is recently expanding in southern China and poses a serious threat to rice crops. Few studies related to the genetics and breeding of RBSDV resistance have been reported. We have previously mapped a number of quantitative trait loci (QTLs) for RBSDV resistance by using a recombinant inbred line population of ‘Zhenshan 97’ (ZS97, susceptible)/‘Minghui 63’ (MH63, resistant) with natural infection data in two locations. In the present study, we confirmed the presence of a number of resistant QTLs on chromosomes 6, 7, and 9 from MH63 by using the same population in four different locations. We then focused on a major QTL, qRBSDV-6 ^MH , on chromosome 6 and introduced it into a highly susceptible japonica rice variety, ‘Huaidao 5’, using MH63 as the donor via marker-assisted selection, to generate seven backcross inbred lines (BILs). Natural infection and artificial inoculation-based tests revealed that all of the BILs had a significantly higher resistance to RBSDV than the recurrent parent. These results demonstrate that qRBSDV-6 ^MH is a stable major resistance QTL of high breeding value. We also constructed a set of chromosome segment substitution lines (CSSLs) specific to the qRBSDV-6 ^MH region and these used as fine mapping population. Combining the genotypes of CSSLs with the phenotypes from natural infection data in a highly RBSDV epidemic area during two different sowing seasons, we were able to precisely map qRBSDV-6 ^MH to the markers S18 and S23 at a physical distance of 627.6 kb on the Nipponbare reference genome.     

Factors influencing wild boar damage in Taohongling National Nature Reserve in China: a model approach

Conflicts between humans and wildlife, especially wild boar (Sus scrofa), have caused serious problems across the world in recent years. It is necessary to effectively control wild boar agricultural damage that may be influenced by many factors. In this study, we collected data on agricultural damage caused by wild boars from November 2009 to October 2010 using field surveys and social interviews in Taohongling National Nature Reserve of Jiangxi Province, China. We constructed models using binary logistic regression analysis to predict damage risks and to identify the factors influencing damage risks. About 8.1 % of croplands were damaged by wild boars, and the damage to rice, cotton, and other crops were not distributed based on their respective availability as shown by the result of a chi-square goodness-of-fit test. Five factors (Japanese silvergrass, soil conditions, terrain, distances to settlements, and water sources) were explained in a model based on damage area (area-based model) with the prediction accuracy being 72.1 %. In addition to these five factors, one additional factor (i.e. distance to forest edge) was retained in a model based on damage frequency (frequency-based model) with the prediction accuracy being 83.1 %. Caution is needed when we apply these two models to predict boar damage to crops, and it is recommended that both models be used in combination to predict the damage probabilities more accurately.     

Method for Quantitative Study of Airway Functional Microanatomy Using Micro-Optical Coherence Tomography

We demonstrate the use of a high resolution form of optical coherence tomography, termed micro-OCT (μOCT), for investigating the functional microanatomy of airway epithelia. μOCT captures several key parameters governing the function of the airway surface (airway surface liquid depth, periciliary liquid depth, ciliary function including beat frequency, and mucociliary transport rate) from the same series of images and without exogenous particles or labels, enabling non-invasive study of dynamic phenomena. Additionally, the high resolution of μOCT reveals distinguishable phases of the ciliary stroke pattern and glandular extrusion. Images and functional measurements from primary human bronchial epithelial cell cultures and excised tissue are presented and compared with measurements using existing gold standard methods. Active secretion from mucus glands in tissue, a key parameter of epithelial function, was also observed and quantified.     

Integrated Bioinformatics Analysis for the Identification of Key Molecules and Pathways in the Hippocampus of Rats After Traumatic Brain Injury

Neurochemical Research - High-throughput and bioinformatics technology have been broadly applied to demonstrate the key molecules involved in traumatic brain injury (TBI), while no study has...     

Design,synthesis and preliminary structure–activity relationship investigation of nitrogen-containing chalcone derivatives as acetylcholinesterase and butyrylcholinesterase inhibitors: a further study based on Flavokawain B Mannich base derivatives

In order to study the structure–activity relationship of Flavokawain B Mannich-based derivatives as acetylcholinesterase (AChE) inhibitors in our recent investigation, 20 new nitrogen-containing chalcone derivatives (4?a–8d) were designed, synthesized, and evaluated for AChE inhibitory activity in vitro. The results suggested that amino alkyl side chain of chalcone dramatically influenced the inhibitory activity against AChE. Among them, compound 6c revealed the strongest AChE inhibitory activity (IC₅₀ value: 0.85?μmol/L) and the highest selectivity against AChE over BuChE (ratio: 35.79). Enzyme kinetic study showed that the inhibition mechanism of compound 6c against AChE was a mixed-type inhibition. The molecular docking assay showed that this compound can both bind with the catalytic site and the peripheral site of AChE.     

滇东南普阳盆地含煤地层孢粉组合特征及其年代

云南地处青藏高原东南缘, 生物多样性丰富, 季风气候特征明显。新生代剧烈的构造活动形成了众多山间盆地, 其间保存了大量精美的植物化石, 是探讨新生代以来植被、植物多样性和地球环境演变的理想地区。但是长期以来, 由于地层年代学证据的缺乏, 这些新生代沉积盆地的地质年代还存在很大争议。本研究通过对滇东南地区富宁县普阳盆地的含煤地层开展深入的孢粉学研究, 探讨盆地含煤地层年代及其古气候演化过程。剖面下部煤层孢粉组合以杉粉属(Taxodiaceaepollenites)为主, 指示以杉科为主的湿润沼泽森林, 冬春季相对湿润; 剖面上部孢粉组合指示以常绿栎类为主的亚热带常绿‒落叶阔叶混交林, 生长山核桃粉属(Caryapollenites)、冬青粉属(Ilexpollenites)、胡桃粉属(Juglanspollenites)、枫香粉属(Liquidambarpollenites)等亚热带常见树种, 气候温暖湿润, 季节分明。结合新发现的哺乳动物化石证据和周边地区不同地质时代的孢粉组合, 普阳盆地含煤地层的沉积时代应为晚始新世; 同时, 孢粉组合也表明滇东南地区植被现代化面貌至少在晚始新世就已经开始出现。     

Remediation of Nitrobenzene Contaminated Soil by Combining Surfactant Enhanced Soil Washing and Effluent Oxidation with Persulfate

The combination of surfactant enhanced soil washing and degradation of nitrobenzene (NB) in effluent with persulfate was investigated to remediate NB contaminated soil. Aqueous solution of sodium dodecylbenzenesulfonate (SDBS, 24.0 mmol L^-1) was used at a given mass ratio of solution to soil (20:1) to extract NB contaminated soil (47.3 mg kg^-1), resulting in NB desorption removal efficient of 76.8%. The washing effluent was treated in Fe²⁺/persulfate and Fe²⁺/H₂O₂ systems successively. The degradation removal of NB was 97.9%, being much higher than that of SDBS (51.6%) with addition of 40.0 mmol L^-1 Fe²⁺ and 40.0 mmol L^-1 persulfate after 15 min reaction. The preferential degradation was related to the lone pair electron of generated SO₄•⁻, which preferably removes electrons from aromatic parts of NB over long alkyl chains of SDBS through hydrogen abstraction reactions. No preferential degradation was observed in •OH based oxidation because of its hydrogen abstraction or addition mechanism. The sustained SDBS could be reused for washing the contaminated soil. The combination of the effective surfactant-enhanced washing and the preferential degradation of NB with Fe²⁺/persulfate provide a useful option to remediate NB contaminated soil.