中国羚牛分类、分布的研究

羚牛(Budorcas taxicolor)这种大型偶蹄类仅产于亚洲,它的个体大小可与云南野牛(Bos gaurus)及青藏高原的牦牛(Bos grunniens)相比,但体型又酷似羊类,特别是它具有隆起的吻鼻、低矮的臀部、成兽下颌的长须以及短小的尾巴,给人以似牛非牛、似羊非羊的印象。 羚牛体型粗壮,成兽体重约200—300公斤,体长在1.8—2.1米,四肢健壮有力,肩高一般在1.3—1.4米之间。肩高大于臀高。雌雄皆具角,一般雄角较粗大。角形特别,先由头顶略靠内侧向上长出,然后以90°方向向外侧弯曲,在角的1/2处又向后方弯转,     

The fungal community and its interaction with the concentration of short-chain fatty acids in the faeces of Chenghua,Yorkshire and Tibetan pigs

Despite their important roles in host nutrition and metabolism, and potential to cause disease, our knowledge of the fungal community in the mammalian gut is quite limited. To date, diversity and composition of fungi in swine gut still remains unknown. Therefore, the first internal transcribed spacer of fungi in faecal samples from three breeds of pigs (10 pigs for each breed) was sequenced based on an Illumina HiSeq 2500 platform, and the relationship between the fungal community and the concentrations of main short-chain fatty acids (SCFAs) was also analysed. Results indicated that Chenghua (local, higher body fat rate), Yorkshire (foreign, higher lean meat and growth rate) and Tibetan (plateau, stronger disease resistance) pigs harboured distinct fungal community. The Basidiomycota and Ascomycota presented as the two predominant phyla, with Loreleia, Russula and Candida as the top three genera in all samples. Network analysis revealed a total of 35 correlations among different fungal genera, with 27 (77.14%) positive and 8 (22.86%) negative pairwise interactions. Canonical correspondence analysis suggested that fungi in the faeces of pigs were more correlated to the concentration of acetate and butyrate rather than propionate. Spearman’s correlation further showed that Tomentella was positively correlated to both acetate and butyrate, and Loreleia was positively correlated to propionate (P < 0.05), while Nephroma and Taiwanofungus were negatively correlated to acetate and propionate (P < 0.05). These findings expanded our knowledge on the intestinal fungi in pigs with different genotypes and phenotypes, indicating that fungi may play an indispensable role during the metabolism of host and the maintenance of intestinal health. The cross-feeding between fungi and other microorganisms may be crucial during the digestion of dietary carbohydrates and the associated physiological processes, which is worthy to be further studied.     

Structural analysis of glycosaminoglycans from Colla corii asini by liquid chromatography-electrospray ion trap mass spectrometry

Glycoconjugate Journal - Colla corii asini (CCA) made from donkey-hide has been widely used as a traditional animal-based Chinese medicine. Chondroitin sulfate (CS), dermatan sulfate (DS) and...     

广西马山岩溶植被年龄序列的群落特征

石漠化地区是我国西南植被恢复和生态重建的重点和难点地区。通过对马山县岩溶植被年龄序列(石漠、草丛、灌丛、小乔林和成熟林)5个演替阶段15个样地(20 m×50 m)的系统取样调查,研究了停止人为干扰后岩溶植被的更新、演替及群落特征的变化。结果表明:沿石漠、草丛、灌丛、小乔林、成熟林的顺向演替发展,群落各层次的覆盖度存在显著差异(P<0.05),乔木层覆盖度以成熟林最大,灌木层覆盖度以小乔林最高,而草本层覆盖度以灌丛最高;重要值≥10.00的科、属、种最大值出现在小乔林;不同演替阶段群落不同层次的结构明显不同,乔木层的植物密度存在显著差异(P<0.05),以小乔林最高;成熟林灌木层的植物密度显著低于小乔林和草丛(P<0.05),与石漠和灌丛差异不显著(P>0.05);森林阶段草本层的植物密度显著低于灌丛、草丛和石漠(P<0.05);群落的物种丰富度随着顺向演替发展而增加,但不同演替阶段不同层次的丰富度变化不同,草本层的物种丰富度以草丛阶段最大,成熟林最小;灌木层的丰富度以小乔林阶段最大,石漠阶段最小;乔木层的丰富度以小乔林最大,成熟林有所下降;不同演替阶段群落草本层的生态优势度无显著差异(P>0.05),而灌木层和乔木层均存在显著差异(P<0.05)。岩溶植被恢复可分为恶劣物理环境阈值和顶极种缺乏的阈值两个阶段,每一个阶段内由不同功能特征的驱动种和关键种决定着群落的演替方向和速度,越接近演替后期,顶极种越丰富,群落驱动种和关键种向高级、大型和长寿植物发展的趋势越明显。     

Prostaglandin endoperoxide H synthases: peroxidase hydroperoxide specificity and cyclooxygenase activation

The cyclooxygenase (COX) activity of prostaglandin endoperoxide H synthases (PGHSs) converts arachidonic acid and O2 to prostaglandin G2 (PGG2). PGHS peroxidase (POX) activity reduces PGG2 to PGH2. The first step in POX catalysis is formation of an oxyferryl heme radical cation (Compound I), which undergoes intramolecular electron transfer forming Intermediate II having an oxyferryl heme and a Tyr-385 radical required for COX catalysis. PGHS POX catalyzes heterolytic cleavage of primary and secondary hydroperoxides much more readily than H2O2, but the basis for this specificity has been unresolved. Several large amino acids form a hydrophobic "dome" over part of the heme, but when these residues were mutated to alanines there was little effect on Compound I formation from H2O2 or 15-hydroperoxyeicosatetraenoic acid, a surrogate substrate for PGG2. Ab initio calculations of heterolytic bond dissociation energies of the peroxyl groups of small peroxides indicated that they are almost the same. Molecular Dynamics simulations suggest that PGG2 binds the POX site through a peroxyl-iron bond, a hydrogen bond with His-207 and van der Waals interactions involving methylene groups adjoining the carbon bearing the peroxyl group and the protoporphyrin IX. We speculate that these latter interactions, which are not possible with H2O2, are major contributors to PGHS POX specificity. The distal Gln-203 four residues removed from His-207 have been thought to be essential for Compound I formation. However, Q203V PGHS-1 and PGHS-2 mutants catalyzed heterolytic cleavage of peroxides and exhibited native COX activity. PGHSs are homodimers with each monomer having a POX site and COX site. Cross-talk occurs between the COX sites of adjoining monomers. However, no cross-talk between the POX and COX sites of monomers was detected in a PGHS-2 heterodimer comprised of a Q203R monomer having an inactive POX site and a G533A monomer with an inactive COX site.     

Exploration of the binding mode of α/β-type small acid soluble proteins (SASPs) with DNA

The α/β-type small acid soluble proteins (SASPs) are a major factor in protecting the spores from being killed in bacteria. In this article, we perform a systematic phylogenetic analysis of the α/β-type SASP in the genus of Geobacillus, which indicates that the whole family can be divided into three groups. We choose one protein from each group as a representative and construct the tertiary structure of these proteins. In order to explore the mechanism of protecting DNA from damage, 15 ns molecular dynamics simulation for the four complexes of Gsy3 with DNA are performed. The sequence alignment, model structure and binding energy analysis indicate that the helix2 region of SASPs is more conserved and plays a more crucial role in protecting DNA. Pairwise decomposition of residue interaction energies calculation demonstrate that amino acids of Asn10, Lys24, Asn49, Ile52, Ile56, Thr57, Lys58, Arg59 and Val61 take major effect in the binding interaction. The differences of energy contribution of the amino acids between different complexes make us conclude that the protein structure conformation has a slight change upon more proteins binding to DNA and consequently there occur protein-protein cooperation interactions.     

Coevolution study of mitochondria respiratory chain proteins: toward the understanding of protein--protein interaction

Coevolution can be seen as the interdependency between evolutionary histories. In the context of protein evolution, functional correlation proteins are ever-present coordinated evolutionary characters without disruption of organismal integrity. As to complex system, there are two forms of protein-protein interactions in vivo, which refer to inter-complex interaction and intra-complex interaction. In this paper, we studied the difference of coevolution characters between inter-complex interaction and intra-complex interaction using "Mirror tree" method on the respiratory chain (RC) proteins. We divided the correlation coefficients of every pairwise RC proteins into two groups corresponding to the binary protein-protein interaction in intra-complex and the binary protein-protein interaction in inter-complex, respectively. A dramatical discrepancy is detected between the coevolution characters of the two sets of protein interactions (Wilcoxon test, p-value = 4.4 x 10-6). Our finding reveals some critical information on coevolutionary study and assists the mechanical investigation of protein-protein interaction.Furthermore, the results also provide some unique clue for supramolecular organization of protein complexes in the mitochondrial inner membrane. More detailed binding sites map and genome information of nuclear encoded RC proteins will be extraordinary valuable for the further mitochondria dynamics study.