Reversion mutation of cDNA CA8-204 minigene construct produces a truncated functional peptide that regulates calcium release in vitro and produces profound analgesia in vivo

Mammalian Genome - Intracellular calcium is critical in orchestrating neuronal excitability and analgesia. Carbonic anhydrase-8 (CA8) regulates intracellular calcium signaling through allosteric...     

Stand Age Influence on Potential Wildfire Ignition and Spread in the Boreal Forest of Northeastern Canada

Although it has long been assumed that wildfire occurrence is independent of stand age in the North American boreal forest, recent studies indicate that young forests may influence burn rates by limiting the ignition and spread of fires for several years. Wildfires not only structure the stand-age mosaic of boreal landscapes, but also alter the likelihood and behavior of subsequent fires. Using a fire simulation model, we evaluated the effect of stand age on the magnitude and spatial patterns of burn probability (BP) in the boreal forest of northeastern Canada. Specifically, we assessed the stand age effect on the two processes driving fire likelihood, ignition and spread, by simulating tens of thousands of fires under three fire regime scenarios that vary in terms of mean fire size and number of burned patches. Assuming minimal resistance to fire ignition and spread, where only the youngest stands (≤ 10 years) are resistant to burning, mean BP is reduced by 10%; in contrast, assuming maximum resistance, where stands up to 90 years old impede wildfires, mean BP can be reduced up to 85%. Although the resistance to ignition on BP is almost identical in magnitude to that of spread, it yields substantially different spatial arrangements of BP. Furthermore, stand age resistance reduces subsequent fire activity not only within but also outside the perimeter of burned patches through a shadow effect. Our results help to untangle the role of factors contributing to stand age resistance on wildfires and offer new insights for improving the spatial mapping of fire likelihood.     

Classification of bacterial cell wall hydrolysases and their potentials as novel alternatives to antibiotics – a response to the letter of Biziulevicius and Kazlauskaite

This is a response to the letter of Biziulevicius and Kazlauskaite, who made a few valuable comments on our recent paper published on the Journal of Applied Microbiology regarding the classification and potential clinic applications as alternative antibiotics of bacterial cell wall hydrolases (BCWH). We confirm that it is of significant practical and theoretical relevance to categorize BCWH according to their sources owing to their strikingly different antibacterial specificities, which are of critical importance to their potential clinic applications. Among the three groups of lytic enzymes, i.e. lysozymes, microlysins and virolysins, virolysins seem to be the most promising alternative antibiotics as a result of a few unique characteristics of this group of lytic enzymes.     

Interactions between the arbuscular mycorrhizal (AM) fungus Glomus intraradices and nontransformed tomato roots of either wild-type or AM-defective phenotypes in monoxenic cultures

Monoxenic symbioses between the arbuscular mycorrhizal (AM) fungus Glomus intraradices and two nontransformed tomato root organ cultures (ROCs) were established. Wild-type tomato ROC from cultivar “RioGrande 76R” was employed as a control for mycorrhizal colonization and compared with its mutant line (rmc), which exhibits a highly reduced mycorrhizal colonization (rmc) phenotype. Structural features of the two root lines were similar when grown either in soil or under in vitro conditions, indicating that neither monoxenic culturing nor the rmc mutation affected root development or behavior. Colonization by G. intraradices in monoxenic culture of the wild-type line was low (<10%) but supported extensive development of extraradical mycelium, branched absorbing structures, and spores. The reduced colonization of rmc under monoxenic conditions (0.6%) was similar to that observed previously in soil. Extraradical development of runner hyphae was low and proportional to internal colonization. Few spores were produced. These results might suggest that carbon transfer may be modified in the rmc mutant. Our results support the usefulness of monoxenically obtained mycorrhizas for investigation of AM colonization and intraradical symbiotic functioning.     

A new catalog of protein beta-sheets

Systematic protein folding studies depend on protein three-dimensional structure annotation, the assignment of amino acid structural types from atomic coordinates. Significant stabilizing factors between adjacent beta-sheet peptide chains have recently been characterized and were not considered during the development of previously published annotation methods. To produce an accurate beta-sheet domain catalog and to encompass the full beta-sheet spectacle, we developed a method, beta-Spider, which evaluates a packing energy between adjacent peptide chains in accordance with the newly discovered stabilizing factors. While considering important energetic factors, our approach also minimizes the use of subjective criteria, such as (phi,psi) boundaries and sets of H-bonding motifs that are used in other existing methods. As a result of the application of beta-Spider to a set of available high-resolution X-ray crystal structures, we present here a new beta-sheet catalog that differs considerably from the one produced by the most acclaimed DSSP method. The catalog includes new H-bonding motifs that were never reported.