Cascade screening and genetic diagnosis of familial hypercholesterolemia in clusters of the Southeastern region from Brazil

Familial hypercholesterolemia (FH) is an autosomal dominant genetic disease characterized by high levels of low-density lipoprotein-cholesterol (LDLc), associated to premature cardiovascular disease. The detection of the variants related to FH is important to improve the early diagnosis in probands / index-cases (ICs) and their relatives. We included ICs with FH and their relatives, living in a small region of Minas Gerais state-Brazil, which were classified according to Dutch Lipid Clinic Network Criteria (DLCNC) and submitted to sequencing of genes related to FH (LDLR, APOB, PCSK9, LDLRAP1, LIPA, STAP1, APOE, ABCG5 e ABCG8). In a total of 143 subjects (32 ICs and 111 relatives), eight variants were identified in 91 individuals. From these variants, five were in LDLR [p.(Asp224Asn), p.(Ser854Gly), p.(Cys34Arg), p.(Asp601His), deletion of exon15 in LDLR)], one in APOB [p.(Met499Val)], one in PCSK9 [p.(Arg237Trp)] and one in APOE [p.(Pro28Leu)] genes. The variants were detected in 100% of those subjects classified as definitive, 87% as probable and 69% as possible FH cases based on DLCNC. The LDLc level was higher in individuals with corneal arch and xanthomas or xanthelasmas, as well as in pathogenic or probably pathogenic variants carriers. This study showed higher frequency of LDLR gene variants compared to other genes related to LDL metabolism in individuals with FH in Minas Gerais – Brazil and the presence of FH in relatives without previous diagnosis. Our data reinforce the importance of molecular and clinical evaluation of FH relatives in order to early diagnosis the FH, as well as cardiovascular diseases prevention.

     

Design of a 5' exonuclease-based real-time PCR assay for simultaneous detection of Bacillus licheniformis, members of the 'B. cereus group' and B. fumarioli in gelatine

AIMS: The design of a fast, sensitive and specific detection method for Bacillus licheniformis, members of the 'B. cereus group' and B. fumarioli in gelatine. METHODS AND RESULTS: Specific Taqman probes were designed and tested in a real-time PCR setting. A specific fluorescent signal could be obtained for all gelatine isolates attributed to these species in one single real-time PCR reaction. After sample preparation, a gelatine sample spiked with 1 CFU provided enough template DNA for a significant signal. CONCLUSION: The potential of a real-time PCR assay for simultaneous detection of B. licheniformis, members of the 'B. cereus group' and B. fumarioli in gelatine is demonstrated. SIGNIFICANCE AND IMPACT OF THE STUDY: Implementation of the assay in gelatine producing plants may shorten delivery terms and inform on hazards to public health and suitable remediation procedures.     

Structural protein requirements in equine arteritis virus assembly

Equine arteritis virus (EAV) is an enveloped, positive-stranded RNA virus belonging to the family Arteriviridae of the order Nidovirales. EAV particles contain seven structural proteins: the nucleocapsid protein N, the unglycosylated envelope proteins M and E, and the N-glycosylated membrane proteins GP(2b) (previously named G(S)), GP(3), GP(4), and GP(5) (previously named G(L)). Proteins N, M, and GP(5) are major virion components, E occurs in virus particles in intermediate amounts, and GP(4), GP(3), and GP(2b) are minor structural proteins. The M and GP(5) proteins occur in virus particles as disulfide-linked heterodimers while the GP(4), GP(3), and GP(2b) proteins are incorporated into virions as a heterotrimeric complex. Here, we studied the effect on virus assembly of inactivating the structural protein genes one by one in the context of a (full-length) EAV cDNA clone. It appeared that the three major structural proteins are essential for particle formation, while the other four virion proteins are dispensable. When one of the GP(2b), GP(3), or GP(4) proteins was missing, the incorporation of the remaining two minor envelope glycoproteins was completely blocked while that of the E protein was greatly reduced. The absence of E entirely prevented the incorporation of the GP(2b), GP(3), and GP(4) proteins into viral particles. EAV particles lacking GP(2b), GP(3), GP(4), and E did not markedly differ from wild-type virions in buoyant density, major structural protein composition, electron microscopic appearance, and genomic RNA content. On the basis of these results, we propose a model for the EAV particle in which the GP(2b)/GP(3)/GP(4) heterotrimers are positioned, in association with a defined number of E molecules, above the vertices of the putatively icosahedral nucleocapsid.     

Seasonality and 3D‐visualization of brooding in the hermaphroditic ophiuroid Amphiura capensis

This article describes the reproductive biology and developing young of Amphiura capensis, a small brooding brittle star found in the intertidal zones of Namibia and South Africa. Each month from October 2014 to September 2015, 20 specimens were collected from Mouille Point, Cape Town, South Africa, and dissected for internal examination of brooding characteristics. Disc diameters of 238 analyzed adults ranged 2.5–8.7 mm, with a mean of 6.15 mm (SD = 1.10 mm). Brooding was exhibited in 60.5% of all sampled individuals, of which 30.6% contained young of only one of six subjectively chosen size classes, 31.9% contained two size classes, and the rest (37.5%) contained more than two size classes at the same time. Young within the same bursa were commonly of the same size class, which suggests sequential brooding. However, multiple size classes of young were often present within different bursae of the same parent, which thus exhibited characteristics of both sequential and simultaneous brooding. Of 584 brooded young retrieved from dissections, an average of 2.5 (SD = 3.2) and a maximum of 14 young were recorded within a single parent. As no larval stages were observed, development was assumed to be direct. Three‐dimensional visualizations of μCT scans revealed the positions of the brooded young to be quite different from those in other species, facing with their mouths downwards instead of upwards, and not all pressed against the adult's bursal wall. Brooding occurred throughout the year, but numbers of young peaked in austral winter, coinciding with warmer water temperatures at this site. The duration of brooded development was estimated to be ~6 months, comparable with other species with similar reproductive biology.     

Protection by zinc against UVA— and UVB-induced cellular and genomic damage in vivo and in vitro

For many years, zinc salts have been used both topically and orally to treat minor burns and abrasions as well as to enhance wound repair in man and animals. In this study we describe the protective effects of zinc against UV-induced genotoxicity in vitro and against sunburn cell formation in mouse skin in vivo. Cultured skin cells from neonatal mice showed a dramatic increase in the number of micronuclei as a result of UVA and UVB irradiation. Inclusion of zinc at 5 μg/mL in the medium significantly reduced the frequency of micronuclei and of micronucleated cells. In hairless mice, topical application of zinc chloride for 5 consecutive days or a single application 2 h prior to UV exposure reduced the number of sunburn cells in the epidermis as did application of zinc 1 h after exposure. Application 2 h after irradiation also tended to have a protective effect, although there was a large variation between animals. It is proposed that an influx of zinc can protect epidermal cells against some of the more delayed effects of UV-induced damage.     

Virtual manufacturing cells: A taxonomy of past research and identification of future research issues

This paper reviews prior research in the area of virtual manufacturing cells. A virtual manufacturing cell (VMC) is a group of resources that is dedicated to the manufacturing of a part family, though this grouping is not reflected in the physical structure of the manufacturing system. Distinguishing such groups in the production control system offers the possibility of achieving the advantages of cellular manufacturing in non-cellular manufacturing systems. The advantages may include improved flow performance, higher efficiency, simplified production control, and better quality. The paper reviews the previous publications on virtual manufacturing cells, to determine the methods and scope of present research. This results in a comprehensive framework which identifies the underlying principles of VMCs and classifies the different VMC concepts. It is shown that virtual manufacturing cells can significantly improve the performance of manufacturing systems. Based on the comprehensive review, many future research issues and high-impact research areas are also identified.     

Iron, alpha-tocopherol, oxidative damage and micronucleus formation in rat splenocytes

The influence of low and high alpha-tocopherol diets in concert with a high polyunsaturated fat content and a modest increase in dietary iron has been studied. Iron supplementation at 5 times the recommended dietary level was not associated with any increased sensitivity of splenocytes to any of several oxidative challenges ex vivo. Despite the significantly higher alpha-tocopherol concentrations in plasma and liver in animals supplemented with this vitamin, there was no apparent protection against oxidative genotoxicity as judged by the formation of micronuclei in splenocytes subjected to oxidative stress ex vivo. These results add to the accumulating evidence that vitamin E supplementation has little effect against oxidative genomic damage, at least as demonstrated by an increase in micronucleus frequency.     

Predictive Mapping of Species Richness and Plant Species' Distributions of a Peruvian Fog Oasis Along an Altitudinal Gradient

Tropical arid to semi‐arid ecosystems are nearly as diverse as more humid forests and occupy large parts of the tropics. In comparison, however, they are vastly understudied. For instance, fog precipitation alone supports a unique vegetation formation, locally termed lomas, on coastal mountains in the Peruvian desert. To effectively protect these highly endemic and threatened ecosystems, we must increase our understanding of their diversity patterns in relation to environmental factors. Consequently, we recorded all vascular species from 100 random 4 × 4 m plots on the fog‐exposed southern slope of the mountain Mongón. We used topographic and remotely sensed covariates in statistical models to generate spatial predictions of alpha diversity and plant species' distribution probabilities. Altitude was the most important predictor in all models and may represent fog moisture levels. Other significant covariates in the models most likely refer also to water availability but on a finer spatial scale. Additionally, model‐based clustering revealed five altitudinal vegetation zones. This study contributes to a better spatial understanding of the biodiversity and spatial arrangement of vegetation belts of the largely unknown but highly unique lomas formations. Furthermore, mapping species richness and plant species' distributions could support a long‐needed lomas strategic conservation scheme.