A G-C-Rich Palindromic Structural Motif and a Stretch of Single-Stranded Purines Are Required for Optimal Packaging of Mason-Pfizer Monkey Virus (MPMV) Genomic RNA

During retroviral RNA packaging, two copies of genomic RNA are preferentially packaged into the budding virus particles whereas the spliced viral RNAs and the cellular RNAs are excluded during this process. Specificity towards retroviral RNA packaging is dependent upon sequences at the 5′ end of the viral genome, which at times extend into Gag sequences. It has earlier been suggested that the Mason-Pfizer monkey virus (MPMV) contains packaging sequences within the 5′ untranslated region (UTR) and Gag. These studies have also suggested that the packaging determinants of MPMV that lie in the UTR are bipartite and are divided into two regions both upstream and downstream of the major splice donor. However, the precise boundaries of these discontinuous regions within the UTR and the role of the intervening sequences between these dipartite sequences towards MPMV packaging have not been investigated. Employing a combination of genetic and structural prediction analyses, we have shown that region “A”, immediately downstream of the primer binding site, is composed of 50 nt, whereas region “B” is composed of the last 23 nt of UTR, and the intervening 55 nt between these two discontinuous regions do not contribute towards MPMV RNA packaging. In addition, we have identified a 14-nt G-C-rich palindromic sequence (with 100% autocomplementarity) within region A that has been predicted to fold into a structural motif and is essential for optimal MPMV RNA packaging. Furthermore, we have also identified a stretch of single-stranded purines (ssPurines) within the UTR and 8 nt of these ssPurines are duplicated in region B. The native ssPurines or its repeat in region B when predicted to refold as ssPurines has been shown to be essential for RNA packaging, possibly functioning as a potential nucleocapsid binding site. Findings from this study should enhance our understanding of the steps involved in MPMV replication including RNA encapsidation process.     

The Relationship Between Menopause and Metabolic Syndrome: Experimental and Bioinformatics Analysis

Biochemical Genetics - Menopausal hormonal changes have been associated with the emergence of the metabolic syndrome (MetS) and its consequences such as type 2 diabetes (T2D) and cardiovascular...     

Study of the lipolytic system of Penicillium verrucosum var cyclopium (Westling). II. Conditions for the production of the lipase system

The specie Penicillium verrucosum var cyclopium (Westling) has showed that Media containing peptones, especially, trypticase, as a source of nitrogen and maltose or glucose as a source of carbon are most efficient for a good stimulation of the lipolytic activity. Salt, especially Mg++ ion and some oligo- elements exhibit a marked effect on enzyme production. On the other hand, addition of lipids to the growth medium inhibited the lipase production. Shaking of the medium decreases the amount of lipase production but allows an early growth of P. verrucosum var cyclopium (Westling).