Phosphorus alleviation of nitrogen‐suppressed methane sink in global grasslands

Grassland ecosystems account for more than 10% of the global CH₄ sink in soils. A 4‐year field experiment found that addition of P alone did not affect CH₄ uptake and experimental addition of N alone significantly suppressed CH₄ uptake, whereas concurrent N and P additions suppressed CH₄ uptake to a lesser degree. A meta‐analysis including 382 data points in global grasslands corroborated these findings. Global extrapolation with an empirical modelling approach estimated that contemporary N addition suppresses CH₄ sink in global grassland by 11.4% and concurrent N and P deposition alleviates this suppression to 5.8%. The P alleviation of N‐suppressed CH₄ sink is primarily attributed to substrate competition, defined as the competition between ammonium and CH₄ for the methane mono‐oxygenase enzyme. The N and P impacts on CH₄ uptake indicate that projected increases in N and P depositions might substantially affect CH₄ uptake and alter the global CH₄ cycle.     

An aging-related cell surface NADH oxidase (arNOX) generates superoxide and is inhibited by coenzyme Q

This report describes a novel ECTO-NOX protein with an oscillating activity having a period length of ca. 26 min encountered with buffy coat fractions and sera of aged individuals (70–100 years) that generates superoxide as measured by the reduction of ferricytochrome c. The oscillating, age-related reduction of ferricytochrome c is sensitive to superoxide dismutase, is inhibited by coenzyme Q and is reduced or absent from sera of younger individuals (20–40 years). An oscillating activity with a regular period length is a defining characteristic of ECTO-NOX proteins (a group of cell surface oxidases with enzymatic activities that oscillate). The period length of ca. 26 min is longer than the period length of 24 min for the usual constitutive (CNOX) ECTO-NOX proteins of the cell surface and sera which neither generate superoxide nor reduce ferricytochrome c. The aging-related ECTO-NOX protein (arNOX) provides a mechanism to transmit cell surface oxidative changes to surrounding cells and circulating lipoproteins potentially important to atherogenesis. Additionally, the findings provide a rational basis for the use of dietary coenzyme Q to retard aging-related arterial lesions.     

Peptidome analysis reveals the involvement of endogenous peptides in mouse pancreatic dysfunction with aging

Type 2 diabetes (T2D) is a glucose regulation disorder that has significantly enhanced mortality and the global disease burden. The prevalence of T2D has increased worldwide and is higher in the elderly. The function of pancreatic islets decreases with age, which is one important reason for the occurrence of diabetes in the elderly. Recently, peptidome analysis has attracted attention. However, the role of age-related peptides in pancreatic dysfunction has not been investigated extensively. Here, we conducted a comparison of endogenous peptides between pancreas from adult and aging mice by liquid chromatography tandem mass spectrometry (LC-MS/MS). A total of 2,089 peptides originating from 1,280 protein precursors were identified, of which 232 were upregulated and 183 were downregulated in the aging mice (fold change ≥ 2 and p < 0.05), suggesting that the expression of pancreatic peptides in mice varied with age. The molecular weight of most peptides was <3.0 kDa, and the isoelectric point distribution had a bimodal characteristic. Further analysis of cleavage site patterns indicated that proteases cleaved pancreatic proteins according to their rules. Moreover, Gene Ontology and pathway analyses showed that the differentially expressed peptides potentially had specific effects on pancreatic dysfunction. Some differential peptides were located within the domains of precursor proteins that were closely associated with the development of diabetes. We believe that our research may advance the current understanding of pancreas-derived peptides and that certain peptides may be involved in the etiology of diabetes.     

平欧杂种榛叶片解剖结构的抗旱性研究

为研究平欧杂种榛在新疆干旱地区的生态适应性,以新疆伊犁察布查尔县种质资源汇集圃内的38个品种(系)平欧杂种榛为试验材料,采用石蜡制片法,应用光学显微技术测定了叶片上表皮厚度、下表皮厚度、叶片厚度、主脉厚度、栅栏组织厚度、海绵组织厚度、栅栏组织厚度/海绵组织厚度(栅海比)、栅栏组织结构紧密度和海绵组织结构疏松度等9个抗旱相关的解剖结构特征参数,并进行统计分析和抗旱性综合评价。结果表明:(1)不同品种(系)主脉厚度、上下表皮厚度、叶片厚度、栅栏组织厚度和海绵组织厚度均表现出极显著水平差异,叶片上表皮厚度、下表皮厚度、叶片厚度、栅栏组织厚度和海绵组织厚度之间呈极显著相关和显著相关关系。(2)主成分分析表明,第1、2、3主成分的特征值分别为3.109、2.614和1.884,前3个主成分的累计贡献率达84.52%,基本能概括所有指标的主要信息。(3)采用聚类分析法将38个材料分成5大类;隶属函数法综合评价抗旱能力显示,材料84-48、81-21、84-310、F-03、B-11、85-162的抗旱性较强,材料85-127、85-88、B-21、80-4的抗旱性较差。     

Estimating Daytime Ecosystem Respiration to Improve Estimates of Gross Primary Production of a Temperate Forest

Leaf respiration is an important component of carbon exchange in terrestrial ecosystems, and estimates of leaf respiration directly affect the accuracy of ecosystem carbon budgets. Leaf respiration is inhibited by light; therefore, gross primary production (GPP) will be overestimated if the reduction in leaf respiration by light is ignored. However, few studies have quantified GPP overestimation with respect to the degree of light inhibition in forest ecosystems. To determine the effect of light inhibition of leaf respiration on GPP estimation, we assessed the variation in leaf respiration of seedlings of the dominant tree species in an old mixed temperate forest with different photosynthetically active radiation levels using the Laisk method. Canopy respiration was estimated by combining the effect of light inhibition on leaf respiration of these species with within-canopy radiation. Leaf respiration decreased exponentially with an increase in light intensity. Canopy respiration and GPP were overestimated by approximately 20.4% and 4.6%, respectively, when leaf respiration reduction in light was ignored compared with the values obtained when light inhibition of leaf respiration was considered. This study indicates that accurate estimates of daytime ecosystem respiration are needed for the accurate evaluation of carbon budgets in temperate forests. In addition, this study provides a valuable approach to accurately estimate GPP by considering leaf respiration reduction in light in other ecosystems.     

科尔沁草甸生态系统水分利用效率及影响因素

生态系统水分利用效率(WUE)是衡量碳水循环耦合程度的重要指标。利用科尔沁温带草甸草地碳水通量观测数据,对该生态系统总初级生产力水分利用效率(WUEGPP)的日季变化规律及对环境和生理因子的响应进行分析。结果表明:(1)WUEGPP日变化呈下降-稳定-上升的变化趋势,最大值出现在日出后1—2 h,阴天条件下WUEGPP高于晴天,生长中期WUEGPP高于生长初期和末期;(2)总初级生产力、总蒸散和WUEGPP季节变化均呈夏季高、春秋低的形式,生长季平均值分别为0.57 mg m-2s-1、0.08 g m-2s-1和5.97 mg/g,最大值分别为1.49 mg m-2s-1、0.16 g m-2s1和13.62 mg/g;(3)总初级生产力与饱和差、气温和叶面积指数均呈二次曲线关系,与冠层导度呈对数曲线关系;总蒸散与气温呈二次曲线关系,与饱和差、叶面积指数和冠层导度相关性均不显著;(4)WUEGPP与饱和差、气温和叶面积指数均呈二次曲线关系,与冠层导度呈对数曲线关系,饱和差、冠层导度和叶面积指数分别为2.0 k Pa、0.0015 m/s和4.2是控制WUEGPP增加的阈值;(5)净生态系统生产力水分利用效率(WUENEP)和净初级生产力水分利用效率(WUENPP)季节变化规律与WUEGPP一致,均值分别为3.47和5.47 mg/g。     

欧美杂种山杨体细胞无性系变异的分析

以成年欧美杂种山杨(Populustremula×P.tremuloides)优良无性系为材料,通过组织培养方法获得体细胞无性系,利用细胞学和分子生物学方法对其发生的变异进行研究。结果表明:用3.0mg.L-12,4-D诱导的再生植株的细胞染色体稳定性较差,所检测的144个细胞中,变异的细胞中多数发生了染色体加倍,二倍体细胞数仅占36.81%。有些染色体还发生了形态变异,染色体加长,形成带有随体或长臂较长的大型染色体。用1.0mg.L-16-BA诱导再生植株中染色体数量稳定性介于对照和3.0mg.L-12,4-D诱导的再生植株之间,在观察的142个细胞中二倍体细胞占54.93%。再生植株的AFLP分析表明,由激素诱导的再生植株中,AFLP谱带发生了变化,表明发生了体细胞无性系分子水平变异。     

Characterization of Endophytic Fungi from Acer ginnala Maxim. in an Artificial Plantation: Media Effect and Tissue-Dependent Variation

The community of endophytic fungi associated with Acer ginnala, a common tree in northeastern China, was investigated. Four media, PDA, Czapek’s, WA and Sabouraud’s, were used to inoculate explants from seeds, annual twigs and perennial twigs (xylem and bark). Media strongly affected the isolated species number, but not colonization frequency (CF) or isolation frequency (IF). To investigate media effect further, a Principal Component Analysis (PCA) was done. As a result, two components accounted for 86.502% of the total variance were extracted. These two components were named as PDA-determined factor (accounted for 45.139% of the total variance) and Czapek’s-determined factor (accounted for 41.363% of the total variance), respectively. This result suggested that only two media, PDA and Czapek’s, could be used instead of all four media in this study without affecting the isolation results significantly. In total, ten taxa were isolated in this study. Alternaria sp., Phomopsis sp., Neurospora sp. and Phoma sp. were dominant endophytes while Pleosporales Incertae Sedis sp., Cladosporium sp., Trichoderma sp. and Epicoccum sp. were rare taxa. Different tissues/organs had different endophyte assemblages. All tissue/organ pairs had low Bray-Curtis indices (<0.3) except for bark and annual twigs (0.63). Compared to perennial twigs, annual twigs had a lower taxon number, lower isolate number, lower endophyte dominance and diversity indices. Seeds had distinct assemblage, lower similarity and similar low diversity indices to annual twigs. These results suggested that tissue type determines the endophyte assemblage while age determines the diversity.     

The affinity of DNA sequences containing R5Y5 motif and TA repeats with 10.5-bp periodicity to histone octamer in vitro

Nucleosome positioning along the genome is partially determined by the intrinsic DNA sequence preferences on histone. RRRRRYYYYY (R5Y5, R?=?Purine and Y?=?Pyrimidine) motif in nucleosome DNA, which was presented based on several theoretical models by Trifonov et al., might be a facilitating sequence pattern for nucleosome assembly. However, there is not a high conformity experimental evidence to support the concept that R5Y5 motif is a key element for the determination of nucleosome positioning. In this work, the ability of the canonical, H2A.Z- and H3.3-containing octamers to assemble nucleosome on DNA templates containing R5Y5 motif and TA repeats within 10.5-bp periodicity was investigated by using salt-dialysis method in vitro. The results showed that the10.5-bp periodical distributions of both R5Y5 motif and TA repeats along DNA templates can significantly promote canonical nucleosome assembly and may be key sequence factors for canonical nucleosome assembly. Compared with TA repeats within 10.5-bp periodicity, R5Y5 motif in DNA templates did not elevate H2A.Z- and H3.3-containing nucleosome formation efficiency in vitro. This result indicates that R5Y5 motif probably isn’t a pivotal factor to regulate nucleosome assembly on histone variants. It is speculated that the regulatory mechanism of nucleosome assembly is different between canonical and variant histone. These conclusions can provide a deeper insight on the mechanism of nucleosome positioning.

Communicated by Ramaswamy H. Sarma