Phylogenetic Diversity of the Bacillus pumilus Group and the Marine Ecotype Revealed by Multilocus Sequence Analysis

Bacteria closely related to Bacillus pumilus cannot be distinguished from such other species as B. safensis, B. stratosphericus, B. altitudinis and B. aerophilus simply by 16S rRNA gene sequence. In this report, 76 marine strains were subjected to phylogenetic analysis based on 7 housekeeping genes to understand the phylogeny and biogeography in comparison with other origins. A phylogenetic tree based on the 7 housekeeping genes concatenated in the order of gyrB-rpoB-pycA-pyrE-mutL-aroE-trpB was constructed and compared with trees based on the single genes. All these trees exhibited a similar topology structure with small variations. Our 79 strains were divided into 6 groups from A to F; Group A was the largest and contained 49 strains close to B. altitudinis. Additional two large groups were presented by B. safensis and B. pumilus respectively. Among the housekeeping genes, gyrB and pyrE showed comparatively better resolution power and may serve as molecular markers to distinguish these closely related strains. Furthermore, a recombinant phylogenetic tree based on the gyrB gene and containing 73 terrestrial and our isolates was constructed to detect the relationship between marine and other sources. The tree clearly showed that the bacteria of marine origin were clustered together in all the large groups. In contrast, the cluster belonging to B. safensis was mainly composed of bacteria of terrestrial origin. Interestingly, nearly all the marine isolates were at the top of the tree, indicating the possibility of the recent divergence of this bacterial group in marine environments. We conclude that B. altitudinis bacteria are the most widely spread of the B. pumilus group in marine environments. In summary, this report provides the first evidence regarding the systematic evolution of this bacterial group, and knowledge of their phylogenetic diversity will help in the understanding of their ecological role and distribution in marine environments.     

Interleukin-6 Levels in Women with Polycystic Ovary Syndrome: A Systematic Review and Meta-Analysis

Background

The change of serum interleukin-6(IL-6) levels in women with polycystic ovary syndrome (PCOS), as well as the relations between IL-6 levels and body mass index (BMI), insulin resistance(IR) and androgen status of PCOS patients, are not fully understood.

Methods

A literature search was performed in October 2015 using PubMed, Embase and the Cochrane Library databases to identify studies. Random-effects model was used to estimate the standardized mean differences (SMDs) with 95% confidence intervals (CIs).

Results

Twenty articles with 25 case-control studies included 1618 women (922 PCOS patients and 696 controls) were included in this study. IL-6 levels in controls were significantly lower than that of PCOS patients (SMD = 0.78, 95%CI = 0.41–1.16, P<0.001), with significant heterogeneity across studies (I² = 91% and P<0.001). Meta-regression analysis model indicated IR status was the main source of heterogeneity (P = 0.005). Results from group analysis suggested that high IL-6 levels in PCOS were significantly associated with Homeostasis Model Assessment of Insulin Resistance (HOMA2-IR) ratio and total testosterone ratio (T ratio), and was found in both lean and obese women with PCOS. Cumulative meta-analysis results indicated the total effect size (SMD) had tend to be stable since 2012(0.79 to 0.92).

Conclusions

A high IL-6 level is not an intrinsic characteristic of PCOS, but may be a useful monitoring biomarker for the treatment of PCOS.     

DELAYED HEADING DATE1 interacts with OsHAP5C/D,delays flowering time and enhances yield in rice

Heading date is an important agronomic trait affecting crop yield. The GRAS protein family is a plant‐specific super family extensively involved in plant growth and signal transduction. However, GRAS proteins are rarely reported have a role in regulating rice heading date. Here, we report a GRAS protein DHD1 (Delayed Heading Date1) delays heading and enhances yield in rice. Biochemical assays showed DHD1 physically interacts with OsHAP5C/D both in vitro and in vivo. DHD1 and OsHAP5C/D located in the nucleus and showed that rhythmic expression. Both DHD1 and OsHAP5C/D affect heading date by regulating expression of Ehd1. We propose that DHD1 interacts with OsHAP5C/D to delay heading date by inhibiting expression of Ehd1.     

Ozz; a new name on the long list of beta-catenin's nemeses

In the February issue of Developmental Cell, Nastasi et al. describe Ozz, a muscle-specific ubiquitin ligase adaptor that regulates myofibril organization. Ozz appears to function in ubiquitination and degradation of membrane-bound, but not cytosolic, beta-catenin, whose turnover may be required for alignment and growth of the sarcomere, the basic contractile unit of myofibers.     

Simultaneous quantitative and allele-specific expression analysis with real competitive PCR

Background  

For a diploid organism such as human, the two alleles of a particular gene can be expressed at different levels due to X chromosome inactivation, gene imprinting, different local promoter activity, or mRNA stability. Recently, imbalanced allelic expression was found to be common in human and can follow Mendelian inheritance. Here we present a method that employs real competitive PCR for allele-specific expression analysis.     

重组细胞因子制品热原质试验中的降温现象

中国生物制品规程规定采用家兔试验法进行热原试验。规程要求当家兔降温≥０６℃或２只及２只以上降温在０４～０６℃时应重试。在４２０批各类细胞因子热原质试验中发现２３批出现降温,重试后合格率为１００％。降温原因分析表明降温现象与热原性物质无关,与制品种类不存在显著相关性。因此,热原试验中出现家兔降温时是否需要重试值得商榷     

An unstable tree-growth response to climate in two 500 year chronologies,North Eastern Qinghai-Tibetan Plateau

Two new Juniper tree-ring-width (TRW) chronologies spanning more than 500 years were developed in the Yellow River source area, North Eastern Qinghai-Tibetan Plateau (NE-QTP). For the two studied sites, located approximately 50 km apart, split correlation and coherence analysis reveal unstable tree-growth responses to local moisture availability. While significant correlations are obtained with April–June local precipitation, Palmer Drought Severity Index (PDSI) and river flow from 1948/1954 to 1998 and from 1948/1954 to 1970s, these correlations vanish for the time period 1970s-1998. The local instrumental climate data (precipitation, PDSI and river flow) exhibit opposite correlations with large scale modes of variability (El Niño Southern Oscillation, ENSO, and Pacific Decadal Oscillation, PDO) before and after the 1977 PDO shift. One tree-ring chronology is coherent and anti-phased with instrumental ENSO/PDO indices at 5.2-year frequency. On the longer time span, this TRW chronology is compared with PDO reconstructed from historical Chinese data. This comparison also exhibits unstable multi-decadal relationships, notably in the mid 19th century. Altogether, the comparison between our two chronologies, local instrumental climate records, and ENSO/PDO indices suggest a cautious use of local TRW records for paleoclimate reconstructions. Further studies are needed to explore both the spatial coherency of tree-ring records and the temporal stability of their response to local and large scale climate variability.