The Escherichia coli 30S ribosomal subunit; an optimized three-dimensional fit between the ribosomal proteins and the 16S RNA.

We have generated a computerized fit between the 3-dimensional map of the E.coli 30S ribosomal proteins, as determined by neutron scattering, and the recently published 3-dimensional model for the 16S RNA. To achieve this, the framework of coordinates for RNA-protein cross-link sites on the phosphate backbone in the RNA model was related to the corresponding framework of coordinates for the mass centres of the proteins by a least squares fitting procedure. The resulting structure, displayed on a computer graphics system, gives the first complete picture of the E.coli 30S ribosomal subunit showing both the proteins and the double-helical regions of the RNA. The root mean square distance between cross-link sites and protein centres is 32 A. The position of the mass centre of the combined double-helical regions was calculated from the model and compared with the position of the mass centre of the complete set of proteins. The two centres are displaced relative to one another by 20 A in the model structure, in good agreement with the experimental value of 25 A found by neutron scattering.     

Protein binding sites on Escherichia coli 16S ribosomal RNA; RNA regions that are protected by proteins S7, S9 and S19, and by proteins S8, S15 and S17.

Selected groups of isolated 14C-labelled proteins from E. coli 30S ribosomal subunits were reconstituted with 32P-labelled 16S RNA, and the reconstituted complexes were partially digested with ribonuclease A. RNA fragments protected by the proteins were separated by gel electrophoresis and subjected to sequence analysis. Complexes containing proteins S7 and S19 protected an RNA region comprising helices 29 to 32, part of helix 41, and helices 42 and 43 of the 16S RNA secondary structure. Addition of protein S9 had no effect. When compared with previous data for proteins S7, S9, S14 and S19, these results suggest that S14 interacts with helix 33, and that S9 and S14 together interact with the loop-end of helix 41. Complexes containing proteins S8, S15 and S17 protected helices 7 to 10 as well as the "S8-S15 binding site" (helices 20, 22 and parts of helices 21 and 23). When protein S15 was omitted, S8 and S18 showed protection of part of helix 44 in addition to the latter regions. The results are discussed in terms of our model for the detailed arrangement of proteins and RNA in the 30S subunit.     

A detailed model of the three-dimensional structure of Escherichia coli 16 S ribosomal RNA in situ in the 30 S subunit

A large body of intra-RNA and RNA-protein crosslinking data, obtained in this laboratory, was used to fold the phylogenetically and experimentally established secondary structure of Escherichia coli 16 S RNA into a three-dimensional model. All the crosslinks were induced in intact 30 S subunits (or in some cases in growing E. coli cells), and the sites of crosslinking were precisely localized on the RNA by oligonucleotide analysis. The RNA-protein crosslinking data (including 28 sites, and involving 13 of the 21 30S ribosomal were used to relate the RNA structure to the distribution of the proteins as determined by neutron scattering. The three-dimensional model of the 16 S RNA has overall dimensions of 220 A x 140 A x 90 A, in good agreement with electron microscopic estimates for the 30 S subunit. The shape of the model is also recognizably the same as that seen in electron micrographs, and the positions in the model of bases localized on the 30 S subunit by immunoelectron microscopy (the 5' and 3' termini, the m7G and m6(2)A residues, and C-1400) correspond closely to their experimentally observed positions. The distances between the RNA-protein crosslink sites in the model correlate well with the distances between protein centres of mass obtained by neutron scattering, only two out of 66 distances falling outside the expected tolerance limits. These two distances both involve protein S13, a protein noted for its anomalous behaviour. A comparison with other experimental information not specifically used in deriving the model shows that it fits well with published data on RNA-protein binding sites, mutation sites on the RNA causing resistance to antibiotics, tertiary interactions in the RNA, and a potential secondary structural "switch". Of the sites on 16 S RNA that have been found to be accessible to chemical modification in the 30 S subunit, 87% are at obviously exposed positions in the model. In contrast, 70% of the sites corresponding to positions that have ribose 2'-O-methylations in the eukaryotic 18 S RNA from Xenopus laevis are at non-exposed (i.e. internal) positions in the model. All nine of the modified bases in the E. coli 16 S RNA itself show a remarkable distribution, in that they form a "necklace" in one plane around the "throat" of the subunit. Insertions in eukaryotic 18 S RNA, and corresponding deletions in chloroplast or mammalian mitochondrial ribosomal RNA relative to E. coli 16 S RNA represent distinct sub-domains in the structure.(ABSTRACT TRUNCATED AT 400 WORDS)     

The distribution of fluoride in some antarctic seals

Summary The aim of this investigation was to find out why some antarctic seals tolerate fluoride levels in their food (krill) that would be toxic to man. The fluoride content of different soft and hard tissues, urine and feces from 16 L. carcinophagus, 13 L. weddelli and 2 A. tropicalis (urine only) were determined by the fluoride sensitive electrode or by a photometric method (urine). Results and conclusions are following: All soft tissues have low concentrations of fluoride in the same range as soft tissues from non antarctic and non krill eating marine or terrestrial vertebrates. But within the soft tissues there are significant differences in the fluoride content (blood: 0.001 ppm F/dw — brain: 9.1 ppm F/dw). A special tolerance for fluoride of soft tissues can be excluded. Compared with man or weddell-seals the crabeater-seals store two times more fluoride in their skeleton. Hard structures that stop their mineralisation early in the development like teeth have only a relatively low fluoride content. For the same reason only neglectable amounts of fluoride could be detected in hair. Fluoride excretion by the kidneys is efficient and is — besides the storage of fluoride in the skeleton — the second mechanism to guarantee a good blood homoiostasis for fluoride. Until now it is impossible to decide how much fluoride from the food is resorbed by the digestive tract.     

Quantitative und qualitative elektronenmikroskopische Untersuchungen zur Struktur des Leberläppchens normaler Ratten

Zusammenfassung Untersucht wurden zufällig ausgewählte Leberstückchen normaler Wistarratten. 25 lückenlose Übersichten von periportalen und zentralen Arealen des Leberläppchens, die aus 2564 elektronenmikroskopischen Einzelaufnahmen (Vergrößerung 4600 x) zusammengesetzt waren, wurden bei einer Gesamtvergrößerung von 53000 x mit Hilfe eines Liniengitters nach der Methode. von Loud quantitativ ausgewertet.Die mittlere Cytoplasmafläche eines Hepatocyten, der im Läppchenzentrum liegt, ist größer als diejenige einer in der Peripherie des Läppchens gelegenen Leberzelle, die Zahl der Anschnitte von Mitochondrien pro Cytoplasmafläche im Zentrum geringfügig größer als in der Peripherie. Die Zahl der Lysosomen pro Cytoplasmafläche ist in der Peripherie des Lobulus dreimal höher als in seinem Zentrum.Der Flächenanteil der Mitochondrienanschnitte an der Cytoplasmafläche im Zentrum beträgt 12,3%, im periportalen Bereich 19,3%. Die mittlere Fläche eines Mitochondrienanschnittes ist im periportalen Gebiet doppelt so groß wie im Zentrum, die Membranprofildichte in Mitochondrien periportaler Zellen ist um etwa ein Drittel größer.Schüsselförmige und schlegeloder hantelförmige Mitochondrien mit parallel zur Längsachse ausgerichteten inneren Membranen wurden nur im Zentrum des Leberläppchens gefunden. Dasselbe gilt für Plasmaprotusionen der Hepatocyten in den Disseschen Raum. Glykogenablagerungen sind gleichmäßig über den Lobulus verteilt, auffallend ist jedoch die ungleichmäßige Verteilung auf die einzelnen Zellen.Die quantitativen Daten werden mit histochemischen Befunden und biochemisch ermittelten Enzymaktivitäten verglichen. Die morphologischen Beobachtungen werden im Zusammenhang mit ähnlichen Befunden, die an pathologisch veränderten Lebern erhoben wurden, diskutiert.

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Structure of the hepatic lobule of the rat

Summary Small randomly chosen pieces of liver tissue of normal Wistar rats were investigated with the electron microscope. 25 survey pictures, consisting of 2564 individual micrographs, were analyzed quantitatively at a final magnification of 53,000 x by a linear scanning method as described by Loud.The average area of cytoplasm is larger in the centrolobular than in the periportal area. The number of mitochondria per unit of cytoplasmic area was roughly the same throughout a liver lobule. However, in the periportal zone the mitochondria were about two times larger than in the center and displayed a 30% higher membrane profile concentration. It was found that the total mitochondrial area per unit of cytoplasm was 12,3% in the centrolobular region as compared to 19,3% in the periportal zone. The number of lysosomes per unit of cytoplasmic area was about three times higher in the periportal than in the centrolobular zone.Cup- and dumbbell-shaped mitochondria with densely packed and longitudinally arranged internal membranes were only found in the centrolobular area. Irregular protrusions of the liver cell into the space of Disse were also found exclusively in this area. The amount of glycogen varied considerably from cell to cell but no significant difference in this respect could be seen between the two zones of the liver lobule.The quantitative findings are discussed with reference to available bio- and histochemical data. The morphological observations are compared with similar observations made on pathologically altered liver cells.

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Herrn Prof. Dr. med. Helmut Ruska zum 60. Geburtstag gewidmet.

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Mit Unterstützung durch die Deutsche Forschungsgemeinschaft.     

Suppression of Root Rot on Peas, Beans and Beetroots Caused by Pythium ultimum and Rhizoctonia solani through the Amendment of Growing Media with Composted Organic Household Waste

In pot experiments under controlled environmental conditions, composted organic household waste showed a suppression of soilborne plant pathogens. The addition of 8 %, 10 % and 30 % compost to the potting material which was artificially infested with Pythium ultimum or Rhizoctonia solani considerably reduced the incidence of disease in different varieties of host plants. It became evident that the degree of protection provided by compost depends upon the amount of compost added and upon the vulnerability of the host plant to infection. In an experiment using increasing levels of inoculum, the compost proved suppressive to the pathogen even under extreme disease conditions. This suppressive effect was still evident in compost which had been stored for prolonged periods.     

The evolution and ecology of multiple antipredator defences

Prey seldom rely on a single type of antipredator defence, often using multiple defences to avoid predation. In many cases, selection in different contexts may favour the evolution of multiple defences in a prey. However, a prey may use multiple defences to protect itself during a single predator encounter. Such “defence portfolios” that defend prey against a single instance of predation are distributed across and within successive stages of the predation sequence (encounter, detection, identification, approach (attack), subjugation and consumption). We contend that at present, our understanding of defence portfolio evolution is incomplete, and seen from the fragmentary perspective of specific sensory systems (e.g., visual) or specific types of defences (especially aposematism). In this review, we aim to build a comprehensive framework for conceptualizing the evolution of multiple prey defences, beginning with hypotheses for the evolution of multiple defences in general, and defence portfolios in particular. We then examine idealized models of resource trade-offs and functional interactions between traits, along with evidence supporting them. We find that defence portfolios are constrained by resource allocation to other aspects of life history, as well as functional incompatibilities between different defences. We also find that selection is likely to favour combinations of defences that have synergistic effects on predator behaviour and prey survival. Next, we examine specific aspects of prey ecology, genetics and development, and predator cognition that modify the predictions of current hypotheses or introduce competing hypotheses. We outline schema for gathering data on the distribution of prey defences across species and geography, determining how multiple defences are produced, and testing the proximate mechanisms by which multiple prey defences impact predator behaviour. Adopting these approaches will strengthen our understanding of multiple defensive strategies.     

Effect of Axial Ligand Length on Biological and Anticancer Properties of Axially Disubstituted Silicon Phthalocyanines

In this study, three new axially disubstituted silicon phthalocyanines ( SiPc1–3 ) and their quaternized phthalocyanine derivatives ( QSiPc1–3 ) were prepared and characterized. The biological properties (antioxidant, antimicrobial, antibiofilm, and microbial cell viability activities) of the water-soluble silicon phthalocyanines were examined, as well. A 1 % DMSO diluted with pure water was used as a solvent in biological activity studies. All the compounds exhibited high antioxidant activity. They displayed efficient antimicrobial and antimicrobial photodynamic therapeutic properties against various microorganisms, especially Gram (+) bacteria. Additionally, they demonstrated high antibiofilm activities against S. aureus and P. aeruginosa. In addition, 100 % bacterial reduction was obtained for all the studied phthalocyanines against E. coli viable cells. Besides, the DNA cleavage and binding features of compounds ( QSiPc1–3 ) were studied using pBR322 DNA and CT-DNA, respectively. Furthermore, the human topoisomerase I enzyme inhibition activities of compounds QSiPc1 – 3 were studied. Anticancer properties of the water-soluble compounds were investigated using cell proliferation MTT assay. They exhibited anticarcinogenic activity against the human colon cancer cell line (DLD-1). Compounds QSiPc1 and QSiPc3 displayed a high anticarcinogenic effect on the DLD-1 cell line. The obtained results indicated that all the studied compounds may be effective biological agents and anticancer drugs after further investigations.