Fatty Acid Profiles of Erwinia amylovora as Influenced by Growth Medium, Physiological Age and Experimental Conditions

Total cellular fatty acids for 20 strains of Erwinia amylovora grown on trypticase soy agar (TSA) for 3 days at 27°C, and for 3 strains grown on nutrient agar (NA), King's B (KB), glucoseyeast extract carbonate (GYCA) and TSA for 1, 3 and 6 days were analyzed by gas-liquid chromatography. Forty one percent of total fatty acids were saturated even-carbon straight chains, 6 % were saturated odd-carbon chains, 34 % unsaturated acids, 6 % hydroxy-substituted acids, 1 % branched chains, 7 % cyclic acids, and 4 % unidentified components. Composition was affected by growth medium, physiological age of cells, and chromatograph sensitivity. On TSA and NA saturated odd-carbon and cyclic acids of the 3 strains (combining 1, 3 and 6-day data) were higher than on KB and GYCA. Cyclic acids increased with physiological age on GYCA and KB medium. Even-carbon straight chain and unsaturated fatty acids (major components) constituted a significantly lower percentage of total fatty acids in chromatograms of high sensitivity (30–50 components) than of low instrument sensitivity (15–20 components).     

Differentiation of Erwinia Species in the "Herbicola" Group by Class Analysis of Cellular Fatty Acids

Profiles of cellular fatty acids of Erwinia herbicola, E. ananas, E. stewartü and E. uredovora , comprising the Herbicola group in the genus Erwinia , contained 7 major components accounting for 90–95% of total fatty acids, and,30 minor components, each less than 1% of the total. The major components and their average percentage ranges in cells on King's medium B at 28°C for 1 days were: 12:0 (3.5–4.5%), 14:0 (3.6–4.3%), 16:0 (28.1–35.7%), 16:1 (17.5–24.2%), 18:1 (13.9–31.9%), 3-OH 14:0 (4.6–7.2%) and cyclopropane 17:0 (trace levels in E. stewartii , 5.0–6.7% in other species). Fatty acid composition changed as a function of physiological age of the cells. The regression coefficient ( b ) as a function of age for percentage of saturated even- and oddcarbon, straight-chain fatty acids (Classes A and B) was either negative or not significant for E. ananas and positive for the other species. A series of dichotomous steps was constructed based on fatty acid algorithms to differentiate all four species.     

Brca2 (XRCC11) Deficiency Results in Radioresistant DNA Synthesis and a Higher Frequency of Spontaneous Deletions

We show here that the radiosensitive Chinese hamster cell mutant (V-C8) of group XRCC11 is defective in the breast cancer susceptibility gene Brca2. The very complex phenotype of V-C8 cells is complemented by a single human chromosome 13 providing the BRCA2 gene, as well as by the murine Brca2 gene. The Brca2 deficiency in V-C8 cells causes hypersensitivity to various DNA-damaging agents with an extreme sensitivity toward interstrand DNA cross-linking agents. Furthermore, V-C8 cells show radioresistant DNA synthesis after ionizing radiation, suggesting that Brca2 deficiency affects cell cycle checkpoint regulation. In addition, V-C8 cells display tremendous chromosomal instability and a high frequency of abnormal centrosomes. The mutation spectrum at the hprt locus showed that the majority of spontaneous mutations in V-C8 cells are deletions, in contrast to wild-type V79 cells. A mechanistic explanation for the genome instability phenotype of Brca2-deficient cells is provided by the observation that the nuclear localization of the central DNA repair protein in homologous recombination, Rad51, is reduced in V-C8 cells.     

Differentiation of Erwinia Species in the "Amylovorap" Group by Class Analysis of Cellular Fatty Acids

Cellular fatty acids of Erwinia species in the Amylovora group ( E. amylovora, E. nigrifluens, E. quercina, E. rubrifaciens, E. salicis and E. tracheiphila ), grown on King's medium B agar for 1,3, and 6 days at 28°C, were analyzed by gas-liquid chromatography, grouped by chemical class, and compared in order to differentiate the species. For the group in general, the average percentage in 1-day-old cells ranged 36.4–41.5% for the saturated straight-chain even-carbon fatty acids, (Class A), 0.3–0.7% for saturated straight-chain odd-carbons (Class B), 43.4–53.3% for unsaturated acids (Class C), 4.5–7.1% for hydroxy-substituted acids (Class D), 0.2–2.0% for branched-chain acids (Class E), and 0–7.5% for cyclopropane fatty acids (Class F). Species could be differentiated in 4 sequential steps based on: 1) percentage of the 12:0 fatty acid ( E. amylovora >3.6%, E. quercina (1%);2) sum of Classes E + F ( E. tracheiphila (0.3%);3) ratio Class A/(E + F) ( E. salicis <8); and percentage of 18:1 ( E. rubrifaciens >14%, E. nigrifluens < 14%). Physiological age significantly affected relative percentages of Classes B, C and F in E. amylovora and E. salicis ; of Classes A, C and F in E. quercina ; of Class A in E. tracheiphila ; and of Class C in E. nigrifluens.     

Study of the long-wavelength fluorescence band at 920 nm of isolated reaction centers of the photosynthetic bacterium Rhodopseudomonas spaeroides R-26 with fluorescence-detected magnetic resonance in zero field

The triplet state of isolated reaction centers of Rhodopseudomonas sphaeroides R-26 has been studied by fluorescence-detected electron spin resonance in zero magnetic field (FDMR) at 4.2 K. The sign of the FDMR resonance monitored at the long-wavelength fluorescence band is positive (fluorescence increase); this confirms the earlier interpretation (Hoff, A.J. and Gorter de Vries, H. (1978) Biochim. Biophys. Acta 503, 94–106) that the negative sign of the FDMR resonance of the reaction center triplet state in whole bacterial cells is caused by resonant transfer of the singlet excitations from the antenna pigments to the trap. By monitoring the FDMR response as a function of the wavelength of fluorescence, we have recorded microwave-induced fluorescence spectra. In addition to the positive microwave-induced fluorescence band peaking at 935 nm, at 905 nm a negative band was found. The resonant microwave frequencies for these two bands, i.e., the values of the zero-field splitting parameters |D| and |E| of the triplet state being monitored, were different, those of the 905 nm microwave-induced fluorescence band being identical to the resonant microwave frequencies measured with absorption-detected zero-field resonance (Den Blanken, H.J., Van der Zwet, G.P. and Hoff, A.J. (1982) Chem. Phys. Lett. 85, 335–338), a technique that monitors the bulk properties of the sample. From this result and its negative sign, we tentatively attribute the 905 nm microwave-induced fluorescence band to a small (possibly less than 1%) fraction of antenna bacteriochlorophylls that are in close contact with the trap. The positive 935 nm microwave-induced fluorescence band with resonant microwave frequencies deviating from the bulk material is ascribed to a minority of primary donor bacteriochlorophyll dimers, which have a higher than normal fluorescence yield because of a somewhat slower charge-separation reaction. Is it likely that practically all long-wavelength fluorescence of isolated reaction centers stems from such impaired reaction centers.     

Identification of four loci isolated from two Streptococcus thermophilus phage genomes responsible for mediating bacteriophage resistance

Sequence data derived from the Streptococcus thermophilus phages phiO1205 and phi7201 indicated that each of these phages contains a distinct DNA region dedicated to replication. Southern blotting experiments showed that phages infecting S. thermophilus may be divided into at least two groups, each containing the presumptive replication functions of either φO1205 (group I) or φ7201 (group II). Specific regions from the putative replication module of each of the two phages were examined for their ability to provide phage resistance.     

Evaluation of 5'-nuclease and hybridization probe assays for the detection of shiga toxin-producing Escherichia coli in human stools

5′-Nuclease and a hybridization probe assays for the detection of shiga toxin-producing Escherichia coli were validated with regard to selectivity, analytical sensitivity, reproducibility and clinical performance. Both assays were capable of detecting the classical stx₁ and stx₂ genes when challenged with reference strains of E. coli (n = 40), although 1 to 4 minority sequence variants, whose clinical relevance is limited (stx_1c, stx_1d, and stx_2f), were detected less efficiently or not at all by one or both assays. No cross reaction was observed for both assays with 37 strains representing other gastrointestinal pathogens, or normal gastrointestinal flora. Analytical sensitivity ranged from 3.07 to 3.52 log₁₀ and 3.42 to 4.63 log₁₀ CFU/g of stool for 5′-nuclease and hybridization probe assay, respectively. Reproducibility was high with coefficients of variation of ≤ 5% for both inter- and intra-assay variation. Clinical performance was identical with a panel of archived positive specimens (n = 19) and a prospective panel of stools associated with bloody diarrhea (n = 115). In conclusion, both assays proved to be sensitive and reproducible.     

Immortalization and characterization of Nijmegen Breakage syndrome fibroblasts.

Nijmegen Breakage Syndrome (NBS) is a very rare autosomal recessive chromosomal instability disorder characterized by microcephaly, growth retardation, immunodeficiency and a high incidence of malignancies. Cells from NBS patients are hypersensitive to ionizing radiation (IR) and display radioresistant DNA synthesis (RDS). NBS is caused by mutations in the NBS1 gene on chromosome 8q21 encoding a protein called nibrin. This protein is a component of the hMre11/hRad50 protein complex, suggesting a defect in DNA double-strand break (DSB) repair and/or cell cycle checkpoint function in NBS cells. We established SV40 transformed, immortal NBS fibroblasts, from primary cells derived from a Polish patient, carrying the common founder mutation 657del5. Immortalized NBS cells, like primary cells, are X-ray sensitive (2-fold) and display RDS following IR. They show an increased sensitivity to bleomycin (3.5-fold), etoposide (2.5-fold), camptothecin (3-fold) and mitomycin C (1.5-fold), but normal sensitivity towards UV-C. Despite the clear hypersensitivity towards DSB-inducing agents, the overall rates of DSB-rejoining in NBS cells as measured by pulsed field gel electrophoresis were found to be very similar to those of wild type cells. This indicates that the X-ray sensitivity of NBS cells is not directly caused by an overt defect in DSB repair.     

Defective Brca2 influences topoisomerase I activity in mammalian cells

The Chinese hamster cell mutant V-C8 is defective in the Brca2 gene (Kraakman-van der Zwet et al., 2002, Cell Biol.; 22: 669). Here we report that V-C8 cells were 10-fold more sensitive to camptothecin, an inhibitor of topoisomerase I, than the parental V79 cells. The level of the relaxation activity of topoisomerase I in nuclear extracts was also lower (4-fold) in V-C8 than V79 cells, in spite of the fact that the level of the topoisomerase I protein was the same in these cells. The survival of V-C8 cells in the presence of camptothecin, the sensitivity of V-C8 topoisomerase I to camptothecin, and the level of the relaxation activity in V-C8 nuclear extract were almost completely restored by transfection of V-C8 cells with the murine Brca2 gene or by the transfer of human chromosome 13 providing the BRCA2 gene. These results indicate that the observed changes in the topoisomerase I activity in V-C8 are due to the defective function of the Brca2 gene.