The ScCas9++ variant expands the CRISPR toolbox for genome editing in plants

The development of clustered regularly interspaced palindromic repeats (CRISPR)-associated protein (Cas) variants with a broader recognition scope is critical for further improvement of CRISPR/Cas systems. The original Cas9 protein from Streptococcus canis (ScCas9) can recognize simple NNG-protospacer adjacent motif (PAM) targets, and therefore possesses a broader range relative to current CRISPR/Cas systems, but its editing efficiency is low in plants. Evolved ScCas9⁺ and ScCas9⁺⁺ variants have been shown to possess higher editing efficiencies in human cells, but their activities in plants are currently unknown. Here, we utilized codon-optimized ScCas9, ScCas9⁺ and ScCas9⁺⁺ and a nickase variant ScCas9n⁺⁺ to systematically investigate genome cleavage activity and cytidine base editing efficiency in rice (Oryza sativa L.). This analysis revealed that ScCas9⁺⁺ has higher editing efficiency than ScCas9 and ScCas9⁺ in rice. Furthermore, we fused the evolved cytidine deaminase PmCDA1 with ScCas9n⁺⁺ to generate a new evoBE4max-type cytidine base editor, termed PevoCDA1-ScCas9n⁺⁺. This base editor achieved stable and efficient multiplex-site base editing at NNG-PAM sites with wider editing windows (C₋₁–C₁₇) and without target sequence context preference. Multiplex-site base editing of the rice genes OsWx (three targets) and OsEui1 (two targets) achieved simultaneous editing and produced new rice germplasm. Taken together, these results demonstrate that ScCas9⁺⁺ represents a crucial new tool for improving plant editing.     

环境变化对水稻osfh1突变体成蛋白家族表达的影响

水稻成蛋白基因成员OsFH1在水稻根毛的生长发育中起着关键作用,这一过程受到环境因素的调控,当前的研究对环境因素如何与OsFH1互作调控水稻根毛的机制尚未阐明。为探索水稻成蛋白成员是否在环境因素介导的osfh1突变体根毛表型恢复中发挥作用,该研究使用1/2 MS液体培养液与1/2 MS固体培养基处理osfh1突变体,通过qRT-PCR技术分析成蛋白家族成员表达量,并对成蛋白家族进行生物信息学分析。结果表明:(1)与野生型相比,在液培中osfh1突变体主根根毛缺失,地上部分较短,侧根数量增加,在固体培养中osfh1突变体根毛缺失表型得到恢复。(2)与野生型相比,当osfh1突变体从液培到固培环境时,OsFH16表达量下降,OsFH17表达量上升,并且差异显著。(3)OsFH1、OsFH16、OsFH17都是第一类成蛋白亚家族成员,都具有生长素、赤霉素以及厌氧等与环境胁迫相关顺式作用元件,并且预测到OsFH1、OsFH16和OsFH17定位于质膜行使功能。(4)OsFHs在不同组织的表达模式分析表明,OsFH1在根部表达水平较高,而OsFH16、OsFH17在根部表达量相对较低。综上认为,由于OsFH16、OsFH17、OsFH1之间亲缘关系较高,调控模式相近且三者都可能在细胞质膜上行使功能,因此OsFH16、OsFH17可能参与环境因素与osfh1共同改变根毛表型这一过程。该研究结果为解析环境与osfh1基因共同调控水稻根毛发育机制奠定了一定理论基础,为探索植物成蛋白基因功能提出了新方向。     

AMPA受体与谷氨酸在大鼠三叉神经尾侧亚核内分布的免疫组织化学研究

本文用免疫组织化学ＡＢＣ法调查了４种ＡＭＰＡ受体亚单位（ＧｌｕＲ１、２／３、４）和谷氨酸（Ｇｌｕ）在大鼠三叉神经尾侧亚核（Ｖｃ）内的分布及其匹配关系。我们发现,ＧｌｕＲ１和２／３免疫阳性胞体和纤维密集分布于Ｖｃ的Ⅱ层和Ⅲ层外侧部,在Ｖｃ的其余各层呈散在性分布。ＧｌｕＲ４免疫阳性胞体和纤维在Ｖｃ各层均无分布。Ｇｌｕ免疫阳性胞体分布于Ｖｃ各层,尤以浅层（Ⅰ、Ⅱ层）密集,Ｇｌｕ免疫阳性纤维及终末结构主要分布于Ｖｃ浅层。结果表明,Ｇｌｕ免疫阳性纤维及终末样结构与ＡＭＰＡ受体免疫阳性胞体和纤维在Ｖｃ浅层的分布总体上是相互匹配的,但ＡＭＰＡ受体各亚单位在Ｖｃ内的分布存在明显的差异。本文提示,Ｖｃ内的Ｇｌｕ可能通过作用于不同的ＡＭＰＡ受体亚单位而发挥其多种生理功能     

Molecular mechanisms regulating Pi-signaling and Pi homeostasis under OsPHR2, a central Pi-signaling regulator, in rice

Phosphorus (P) is one of the most important major mineral elements for plant growth and metabolism. Plants have evolved adaptive regulatory mechanisms to maintain phosphate (Pi) homeostasis by improving phosphorus uptake, translocation, remobilization and efficiency of use. Here we review recent advances in our understanding of the OsPHR2-mediated phosphate-signaling pathway in rice. OsPHR2 positively regulates the low-affinity Pi transporter OsPT2 through physical interaction and reciprocal regulation of OsPHO2 in roots. OsPT2 is responsible for most of the OsPHR2-mediated accumulation of excess Pi in shoots. OsSPX1 acts as a repressor in the OsPHR2-mediated phosphate-signaling pathway. Some mutants screened from ethyl methanesulfonate (EMS)-mutagenized M2 population of OsPHR2 overexpression transgenic line removed the growth inhibition, indicating that some unknown factors are crucial for Pi utilization or plant growth under the regulation of OsPHR2.     

CRISPR在食源性致病菌进化分析、检测分型及毒力耐药调控中的应用进展

规律成簇间隔的短回文重复序列 (Clustered regularly interspaced short palindromic repeats,CRISPR) 与其相关蛋白基因系统可通过限制基因的水平转移而有效防御噬菌体等外源基因元件的入侵,不同细菌之间的CRISPR结构有所差异。基于CRISPR系统的差异性,文中对近几年CRISPR在食源性致病菌进化分析、检测与分型、毒力与耐药中的应用研究进行概述,并对基于CRISPR序列特点开发的细菌检测分型方法以及CRISPR与食源性致病菌的毒力、耐药性之间的相关性进行重点总结分析。此外,文中探讨了CRISPR在进化分析、检测与分型、毒力与耐药应用中的不足,提出将CRISPR分型方法标准化、完善与扩充致病菌CRISPR数据库、进一步探究噬菌体与细菌之间的共进化关系等建议,为进一步探索CRISPR功能提供参考。     

珠三角河网区典型生境植物群落构成特征及生态修复

如何实现生态文明建设与三生空间高度混杂地区的高质量协同发展是珠三角河网区新时期面对的重要难题。以2018—2021年间积累的第一手田野调查资料为基础,针对广佛地区20处样地202个样点,综合生态学数量分析与风景园林学空间分析方法,研究河网区典型生境的植物群落构成特征及应用。结果表明：(1)珠三角河网区植物物种丰富,维管束植物共122科382属551种;植物群落“乔、灌、草、藤本”垂直结构完整,但乡土植物占比较低、外来入侵较严重;(2)动物友好植物种类丰富,共有鸟类友好植物88种、昆虫类友好植物90种、鱼类两栖类友好植物34种,但缺乏针对动物友好生境的科学配置;(3)河网区包括滨水、坑塘、农田、聚落四类典型生境以及9个稳定的植物群系,但在长期人为干扰下其生态功能和水乡风貌特征被严重削弱。最后,以佛山大美公园为例,探讨了以恢复河网区生物多样性和特色景观风貌为目标的生态修复实践。研究为珠三角河网区地域性景观恢复和三生空间混杂区域的近自然生态修复提供了重要的规划设计蓝本和实践示范。     

Recent advances in RNA structurome

RNA structures are essential to support RNA functions and regulation in various biological processes. Recently, a range of novel technologies have been developed to decode genome-wide RNA structures and novel modes of functionality across a wide range of species. In this review, we summarize key strategies for probing the RNA structurome and discuss the pros and cons of representative technologies. In particular, these new technologies have been applied to dissect the structural landscape of the SARS-CoV-2 RNA genome. We also summarize the functionalities of RNA structures discovered in different regulatory layers—including RNA processing, transport, localization, and mRNA translation—across viruses, bacteria, animals, and plants. We review many versatile RNA structural elements in the context of different physiological and pathological processes (e.g., cell differentiation, stress response, and viral replication). Finally, we discuss future prospects for RNA structural studies to map the RNA structurome at higher resolution and at the single-molecule and single-cell level, and to decipher novel modes of RNA structures and functions for innovative applications.

     

The emerging importance of the SPX domain-containing proteins in phosphate homeostasis

Plant growth and development are strongly influenced by the availability of nutrients in the soil solution. Among them, phosphorus (P) is one of the most essential and most limiting macro-elements for plants. In the environment, plants are often confronted with P starvation as a result of extremely low concentrations of soluble inorganic phosphate (Pi) in the soil. To cope with these conditions, plants have developed a wide spectrum of mechanisms aimed at increasing P use efficiency. At the molecular level, recent studies have shown that several proteins carrying the SPX domain are essential for maintaining Pi homeostasis in plants. The SPX domain is found in numerous eukaryotic proteins, including several proteins from the yeast PHO regulon, involved in maintaining Pi homeostasis. In plants, proteins harboring the SPX domain are classified into four families based on the presence of additional domains in their structure, namely the SPX, SPX-EXS, SPX-MFS and SPX-RING families. In this review, we highlight the recent findings regarding the key roles of the proteins containing the SPX domain in phosphate signaling, as well as providing further research directions in order to improve our knowledge on P nutrition in plants, thus enabling the generation of plants with better P use efficiency.