Mitochondria bridge HIF signaling and ferroptosis blockage in acute kidney injury

Ferroptosis, a form of regulated cell death, plays an important role in acute kidney injury (AKI). Previous studies have shown that prolyl hydroxylase domain protein (PHD) inhibitors that activate HIF signaling provide strong protection against AKI, which is characterized by marked cell death. However, the relationship between PHD inhibition/HIF signaling and ferroptosis in AKI has not been elucidated. Here, we review recent studies to explore the issue. First, we will review the literature concerning the functions of HIF in promoting mitophagy, suppressing mitochondrial respiration and modulating redox homeostasis. Second, we will describe the current understanding of ferroptosis and its role in AKI, particularly from the perspective of mitochondrial dysfunction. Finally, we will discuss the possibility that mitochondria link PHD inhibition/HIF signaling and ferroptosis in AKI. In conclusion, we propose that HIF may protect renal cells against ferroptosis in AKI by reducing mitochondrial oxidative stress and damage.Subject terms: Cell biology, Kidney diseases     

A Novel Phase of Li15Si4 Synthesized under Pressure

Li₁₅Si₄, the only crystalline phase that forms during lithiation of the Si anode in lithium‐ion batteries, is found to undergo a structural transition to a new phase at 7 GPa. Despite the large unit cell of Li₁₅Si₄ (152 atoms in the unit cell), ab initio evolutionary metadynamics (using the USPEX code) successfully predicts the atomic structure of this new phase (β‐Li₁₅Si₄), which has an orthorhombic structure with an Fdd2 space group. In the new β‐Li₁₅Si₄ phase Si atoms are isolated by Li atoms analogous to the original cubic phase (α‐Li₁₅Si₄), whereas the atomic packing is more efficient owing to the higher Si? Li coordination number and shorter Si? Li, Li? Li bonds. β‐Li₁₅Si₄ has substantially larger elastic moduli compared with α‐Li₁₅Si₄, and has a good electrical conductivity. As a result, β‐Li₁₅Si₄ has superior resistance to deformation and fracture under stress. The theoretical volume expansion of Si would decrease 25% if it transforms to β‐Li₁₅Si₄, instead of α‐Li₁₅Si₄, during lithiation. Moreover, β‐Li₁₅Si₄ can be recovered back to ambient pressure, providing opportunities to further investigate its properties and potential applications.     

Combining Untargeted and Targeted Proteomic Strategies for Discrimination and Quantification of Cashmere Fibers

Cashmere is regarded as a specialty and luxury fiber due to its scarcity and high economic value. For fiber quality assessment, it is technically very challenging to distinguish and quantify the cashmere fiber from yak or wool fibers because of their highly similar physical appearance and substantial protein sequence homology. To address this issue, we propose a workflow combining untargeted and targeted proteomics strategies for selecting, verifying and quantifying biomarkers for cashmere textile authentication. Untargeted proteomic surveys were first applied to identify 174, 157, and 156 proteins from cashmere, wool and yak fibers, respectively. After marker selection at different levels, peptides turned out to afford much higher selectivity than proteins for fiber species discrimination. Subsequently, parallel reaction monitoring (PRM) methods were developed for ten selected peptide markers. The PRM-based targeted analysis of peptide markers enabled accurate determination of fiber species and cashmere percentages in different fiber mixtures. Furthermore, collective use of these peptide makers allowed us to discriminate and quantify cashmere fibers in commercial finished fabrics that have undergone heavy chemical treatments. Cashmere proportion measurement in fabric samples using our proteomic approach was in good agreement with results from traditional light microscopy, yet our method can be more readily standardized to become an objective and robust assay for assessing authenticity of fibers and textiles. We anticipate that the proteomic strategies presented in our study could be further implicated in discovery of quality trait markers for other products containing highly homologous proteomes.     

Remote Limb Ischemic Preconditioning Protects Rats Against Cerebral Ischemia via HIF-1α/AMPK/HSP70 Pathway

Remote limb ischemic preconditioning (RIPC) is a clinically feasible strategy to protect against ischemia/reperfusion injury, but the knowledge concerning the mechanism underlying RIPC is scarce. This study was performed to examine the effect of RIPC on brain tissue suffering from ischemia challenge and explore its underlying mechanism in a rat model. The animals were divided into four groups: Sham, middle cerebral artery occlusion (MCAO), RIPC, and MCAO+RIPC. We found that previous exposure to RIPC significantly attenuated neurological dysfunction and lessened brain edema in MCAO+RIPC group. Moreover, other important events were observed in MCAO+RIPC group, including substantial decrements in the concentrations of oxidative response indicators [malondialdehyde (MDA), 8-hydroxy-2-deoxyguanosine (8-OHdG), and protein carbonyl], significant reductions in levels of inflammation mediators [myeloperoxidase (MPO), tumor necrosis factor-a (TNF-a), interleukin-1β (IL-1β), and IL-6], and significant decline in neuronal apoptosis revealed by a smaller number of TUNEL-positive cells. Interestingly, both MCAO and RIPC groups exhibited meaningful elevations in the levels of HIF-1a, HSP70, and AMP-activated protein kinase (AMPK) compared to Sham group, and previous exposure to RIPC further elevated the levels of HIF-1a, HSP70, and AMPK in MCAO+RIPC group. Furthermore, the administration of YC-1 (HIF-1 inhibitor), 8-bAMP (AMPK inhibitor), and Quercetin (HSP70 inhibitor) to MCAO+RIPC rats demonstrated that HIF-1α/AMPK/HSP70 was involved in RIPC-mediated protection against cerebral ischemia.     

The hyperthermophilic α-amylase from <Emphasis Type="Italic">Thermococcus</Emphasis> sp. HJ21 does not require exogenous calcium for thermostability because of high-binding affinity to calcium

The hyperthermophilic α-amylase from Thermococcus sp. HJ21 does not require exogenous calcium ions for thermostability, and is a promising alternative to commercially available α-amylases to increase the efficiency of industrial processes like the liquefaction of starch. We analyzed the amino acid sequence of this α-amylase by sequence alignments and structural modeling, and found that this α-amylase closely resembles the α-amylase from Pyrococcus woesei. The gene of this α-amylase was cloned in Escherichia coli and the recombinant α-amylase was overexpressed and purified with a combined renaturation-purification procedure. We confirmed thermostability and exogenous calcium ion independency of the recombinant α-amylase and further investigated the mechanism of the independency using biochemical approaches. The results suggested that the α-amylase has a high calcium ion binding affinity that traps a calcium ion that would not dissociate at high temperatures, providing a direct explanation as to why the addition of calcium ions is not required for thermostability. Understanding of the mechanism offers a strong base on which to further engineer properties of this α-amylase for better potential applications in industrial processes.     

不同肥力条件下黑土及其有机无机复合体的腐殖质组成

采用Kumada法研究了不同肥力黑土及其复合体的腐殖质组成.结果表明,黑土培肥后,粉粒和细砂复合体含量增多;土壤及各级复合体游离态和结合态腐殖质含量得到不同程度提高,但游离态腐殖质的腐殖化度降低.这种作用在粉粒和细砂复合体中表现得更为明显.随复合体粒径增大,复合体有机碳含量、腐殖质提取率、游离态腐殖质含量及游离态胡敏酸的腐殖化度等均有降低趋势.胡敏酸分类结果表明,高肥土壤游离态胡敏酸均为R_p型,低肥则为R_p型和B型.随复合体粒径增大,游离态胡敏酸类型变化序列主要为:A型(粘粒)→B型(粉粒)→R_p型(细砂);无论粒径大小,结合态胡敏酸大多为A型.土壤培肥后,可使全土及各级复合体的游离态腐殖质的腐殖化度降低,进而会发生型变.在黑土中,游离态胡敏酸的型变主要体现在粉粒复合体中,结合态胡敏酸的型变主要体现在细砂复合体中.     

生物素-亲和素偶联探针蛋白芯片检测技术

自行制备一种新型生物素-亲和素偶联探针分子并用于反相蛋白芯片的检测。首先, 将生物素-羊抗鼠IgG与亲和素按照不同比例混合后与鼠IgG蛋白芯片反应, 观察荧光信号的放大情况; 然后以鼠IgG-羊抗鼠IgG体系为研究模式, 对反相蛋白芯片的制备条件进行了考察和优化, 包括荧光分子的非特异性吸附、点样缓冲液的选择以及蛋白的活性等。最后, 采用此偶联探针对反相蛋白芯片进行了检测。结果表明, BSA缓冲液制备的反相蛋白芯片可以防止非特异性吸附, 并有利于保持固定蛋白活性和提高检测限; 另外, 与传统的与生物素-亲和素检测技术相比, 采用生物素-亲和素偶联探针对反相芯片的检测限可以提高4倍左右。表明亲和素-生物素偶联探针成本低、易于合成、并可以与其它的信号放大技术联用进一步提高检测的灵敏度, 有望用于蛋白质芯片的检测。     

解纤维梭菌培养条件的优化

解纤维梭菌Clostridium cellulolyticum是产纤维小体的专性厌氧菌,由于其培养困难,目前仍难以实现高效培养.文中采用响应面法对产纤维小体的解纤维梭菌C.cellulolyticum高细胞密度培养的条件进行了优化.首先用Plackett-Burman实验设计对影响因素效应进行评价,筛选出的显著影响因素分别为:酵母提取物浓度、纤维二糖浓度及培养温度.之后用最陡爬坡实验设计逼近菌体最佳生长条件的区域范围.最后通过中心组合实验设计和响应面分析方法确定显著影响因素的水平和C.cellulolyticum的最优培养条件.优化后的显著影响因素酵母提取物浓度、纤维二糖浓度和培养温度分别为3 g/L、7 g/L和34℃.在最优条件下,摇瓶培养的菌体浓度OD600值由0.303提高到了0.586,增加了93.4％.在发酵罐批次培养条件下,菌体OD600值达到了3.432,比文献报道值高出了2.8倍.研究结果为C.cellulolyticum培养及应用研究提供了基础.