Identification and counting of fish targets using adaptive resolution imaging sonar

Fish are a critical component of marine biology; therefore, the accurate identification and counting of fish are essential for the objective monitoring and assessment of marine biological resources. High-frequency adaptive resolution imaging sonar (ARIS) is widely used for underwater object detection and imaging, and it quickly obtains close-up video of free-swimming fish in high-turbidity water environments. Nonetheless, processing the massive data output using imaging sonars remains a major challenge. Here, the authors developed an automatic image-processing programme that fuses K-nearest neighbour background subtraction with DeepSort target tracking to automatically track and count fish. The automatic programme was evaluated using four test data sets with different target sizes and observation ranges and differently deployed sonars. According to the results, the approach successfully counted free-swimming fish targets with an accuracy index of 73% and a completeness index of 70%. Under appropriate conditions, this approach could replace time-consuming semi-automatic approaches and improve the efficiency of imaging sonar data processing, while providing technical support for future real-time data processing.     

Interactions between Zooplankton and Crude Oil: Toxic Effects and Bioaccumulation of Polycyclic Aromatic Hydrocarbons

We conducted ship-, shore- and laboratory-based crude oil exposure experiments to investigate (1) the effects of crude oil (Louisiana light sweet oil) on survival and bioaccumulation of polycyclic aromatic hydrocarbons (PAHs) in mesozooplankton communities, (2) the lethal effects of dispersant (Corexit 9500A) and dispersant-treated oil on mesozooplankton, (3) the influence of UVB radiation/sunlight exposure on the toxicity of dispersed crude oil to mesozooplankton, and (4) the role of marine protozoans on the sublethal effects of crude oil and in the bioaccumulation of PAHs in the copepod Acartia tonsa. Mortality of mesozooplankton increased with increasing oil concentration following a sigmoid model with a median lethal concentration of 32.4 µl L⁻¹ in 16 h. At the ratio of dispersant to oil commonly used in the treatment of oil spills (i.e. 1∶20), dispersant (0.25 µl L⁻¹) and dispersant- treated oil were 2.3 and 3.4 times more toxic, respectively, than crude oil alone (5 µl L⁻¹) to mesozooplankton. UVB radiation increased the lethal effects of dispersed crude oil in mesozooplankton communities by 35%. We observed selective bioaccumulation of five PAHs, fluoranthene, phenanthrene, pyrene, chrysene and benzo[b]fluoranthene in both mesozooplankton communities and in the copepod A. tonsa. The presence of the protozoan Oxyrrhis marina reduced sublethal effects of oil on A. tonsa and was related to lower accumulations of PAHs in tissues and fecal pellets, suggesting that protozoa may be important in mitigating the harmful effects of crude oil exposure in copepods and the transfer of PAHs to higher trophic levels. Overall, our results indicate that the negative impact of oil spills on mesozooplankton may be increased by the use of chemical dispersant and UV radiation, but attenuated by crude oil-microbial food webs interactions, and that both mesozooplankton and protozoans may play an important role in fate of PAHs in marine environments.     

Cultivation of nitrite-dependent anaerobic methane-oxidizing bacteria: impact of reactor configuration

Nitrite-dependent anaerobic methane oxidation (n-damo) is mediated by bacteria that anaerobically oxidize methane coupled with nitrite reduction and is a potential bioprocess for wastewater treatment. In this work, the effect of reactor configuration on n-damo bacterial cultivation was investigated. A magnetically stirred gas lift reactor (MSGLR), a sequencing batch reactor (SBR), and a continuously stirred tank reactor (CSTR) were selected to cultivate the bacteria. Microbial community was monitored by using quantitative PCR, 16S rRNA gene sequencing, pmoA gene sequencing, and fluorescence in situ hybridization (FISH). The effects of substrate inhibition, methane mass transfer, and biomass washout in the three reactors were focused on. The results indicated that the MSGLR had the best performance among the three reactor systems, with the highest total and specific n-damo activities. Its maximum volumetric nitrogen removal rate was up to 76.9 mg N L^?1 day^?1, which was higher than previously reported values (5.1–37.8 mg N L^?1 d^?1).     

崇明岛内河夏季鱼类群落组成及分布特征

崇明岛为世界最大的河口冲积沙岛,岛内河网水系发达。2018年6月,选择崇明岛内主要代表性河道包括北横引河、南横引河和竖河（庙港、堡镇港、八滧港）,设置16个固定站点,对内河鱼类开展了拖网调查,分析了崇明岛内河夏季鱼类群落组成及分布特征。调查期间共采集到鱼类4417尾,分属6目9科30种,主要为鲤形目鲤科鱼类;其中,淡水鱼类27种,洄游鱼类2种,近海鱼类1种。从空间分布来看,北横引河记录鱼类20种,南横引河记录鱼类17种,竖河记录鱼类18种,不同河道鱼类种类组成及优势种特征存在明显差异,其共有优势种为鲫Carassius auratus、似鳊Pseudobrama simoni和翘嘴红鲌Erythroculter ilishaeformis,部分种类只在特定的河段有记录。北横引河各站点平均物种数、丰度和生物量均高于南横引河和竖河,但3类河道间不存在显著差异（P>0.05）;主要优势种鲫、翘嘴红鲌和似鳊平均体长均以北横引河为最大,且在南横引河与北横引河中的个体体长均存在极显著差异（P<0.01）。聚类和排序分析结果表明,北横引河和南横引河鱼类组成差异较大,而竖河介于两者之间。相似性分析的结果也表明,南、北横引河鱼类群落结构差异极显著（R=0.524,P=0.008）,且这两组间鱼类种类组成的平均相异性最高,为43.92%,造成两组间差异的主要物种有10种（贡献率均大于5%）。综合来看,崇明岛内河鱼类群落组成与分布特征不同于一般的内陆河流,而具有河口型岛屿的特点。未来需要在长期监测基础上,综合多种因素,对崇明岛内河鱼类组成、分布、变化趋势及内在机理开展系统研究。     

Anaerobic Oxidation of Methane Coupled to Nitrite Reduction by Halophilic Marine NC10 Bacteria

Anaerobic oxidation of methane (AOM) coupled to nitrite reduction is a novel AOM process that is mediated by denitrifying methanotrophs. To date, enrichments of these denitrifying methanotrophs have been confined to freshwater systems; however, the recent findings of 16S rRNA and pmoA gene sequences in marine sediments suggest a possible occurrence of AOM coupled to nitrite reduction in marine systems. In this research, a marine denitrifying methanotrophic culture was obtained after 20 months of enrichment. Activity testing and quantitative PCR (qPCR) analysis were then conducted and showed that the methane oxidation activity and the number of NC10 bacteria increased correlatively during the enrichment period. 16S rRNA gene sequencing indicated that only bacteria in group A of the NC10 phylum were enriched and responsible for the resulting methane oxidation activity, although a diverse community of NC10 bacteria was harbored in the inoculum. Fluorescence in situ hybridization showed that NC10 bacteria were dominant in the enrichment culture after 20 months. The effect of salinity on the marine denitrifying methanotrophic culture was investigated, and the apparent optimal salinity was 20.5‰, which suggested that halophilic bacterial AOM coupled to nitrite reduction was obtained. Moreover, the apparent substrate affinity coefficients of the halophilic denitrifying methanotrophs were determined to be 9.8 ± 2.2 μM for methane and 8.7 ± 1.5 μM for nitrite.