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1.
M. Williams Y. E. Shimabukuro D. A. Herbert S. Pardi Lacruz C. Renno E. B. Rastetter 《Ecosystems》2002,5(7):0692-0704
Transferring fine-scale ecological knowledge into an understanding of earth system processes presents a considerable challenge to ecologists. Our objective here was to identify and quantify heterogeneity of, and relationships among, vegetation and soil properties in terra firme rain forest ecosystems in eastern Amazonia and assess implications for generating regional predictions of carbon (C) exchange. Some of these properties showed considerable variation among sites; soil textures varied from 11% to 92% clay. But we did not find any significant correlations between soil characteristics (percentage clay, nitrogen [N], C, organic matter) and vegetation characteristics (leaf area index [LAI], foliar N concentration, basal area, biomass, stem density). We found some evidence for increased drought stress on the sandier sites: There was a significant correlation between soil texture and wood δ13C (but not with foliar δ13C); volumetric soil moisture was lower at sandier sites; and some canopy foliage had large, negative dawn water potentials (ψld), indicating limited water availability in the rooting zone. However, at every site at least one foliage sample indicated full or nearly full rehydration, suggesting significant interspecific variability in drought vulnerability. There were significant differences in foliar δ15N among sites, but not in foliar % N, suggesting differences in N cycling but not in plant access to N. We used an ecophysiological model to examine the sensitivity of gross primary production (GPP) to observed inter- and intrasite variation in key driving variables—LAI, foliar N, and ψld. The greatest sensitivity was to foliar N; standard errors on foliar N data translated into uncertainty in GPP predictions up to ±10% on sunny days and ±5% on cloudy days. Local variability in LAI had a minor influence on uncertainty, especially on sunny days. The largest observed reductions in ψld reduced GPP by 4%–6%. If uncertainty in foliar N estimates is propagated into the model, then GPP estimates are not significantly different among sites. Our results suggest that water restrictions in the sandier sites are not enough to reduce production significantly and that texture is not the key control on plant access to N. Received 28 June 2001; accepted 13 March 2002. 相似文献
2.
Maria Schwaederle Gregory A Daniels David E Piccioni Santosh Kesari Paul T Fanta Richard B Schwab Kelly A Shimabukuro Barbara A Parker Razelle Kurzrock 《Cell cycle (Georgetown, Tex.)》2015,14(11):1730-1737
Next generation sequencing is transforming patient care by allowing physicians to customize and match treatment to their patients’ tumor alterations. Our goal was to study the association between key molecular alterations and outcome parameters. We evaluated the characteristics and outcomes (overall survival (OS), time to metastasis/recurrence, and best progression-free survival (PFS)) of 392 patients for whom next generation sequencing (182 or 236 genes) had been performed. The Kaplan-Meier method and Cox regression models were used for our analysis, and results were subjected to internal validation using a resampling method (bootstrap analysis). In a multivariable analysis (Cox regression model), the parameters that were statistically associated with a poorer overall survival were the presence of metastases at diagnosis (P = 0.014), gastrointestinal histology (P < 0.0001), PTEN (P < 0.0001), and CDKN2A alterations (P = 0.0001). The variables associated with a shorter time to metastases/recurrence were gastrointestinal histology (P = 0.004), APC (P = 0.008), PTEN (P = 0.026) and TP53 (P = 0.044) alterations. TP53 (P = 0.003) and PTEN (P = 0.034) alterations were independent predictors of a shorter best PFS. A personalized treatment approach (matching the molecular aberration with a cognate targeted drug) also correlated with a longer best PFS (P = 0.046). Our study demonstrated that, across diverse cancers, anomalies in specific tumor suppressor genes (PTEN, CDKN2A, APC, and/or TP53) were independently associated with a worse outcome, as reflected by time to metastases/recurrence, best PFS on treatment, and/or overall survival. These observations suggest that molecular diagnostic tests may provide important prognostic information in patients with cancer. 相似文献
3.
Tomohiro Ito Toui Yoshioka Hiromori Shimabukuro Gregory N. Nishihara Hikaru Endo Ryuta Terada 《Phycological Research》2023,71(1):25-36
The effect of temperature, light-spectrum, desiccation and salinity gradients on the photosynthesis of a Japanese subtidal brown alga, Sargassum macrocarpum (Fucales), was determined using a pulse amplitude modulation-chlorophyll fluorometer and dissolved oxygen sensors. Temperature responses of the maximum (Fv/Fm in darkness) and effective (ΔF/Fm′ at 50 μmol photons m−2 s−1; = ΦPSII) quantum yields during 6-day culture (4–36°C) remained high at 12–28°C, but decreased at higher temperatures. Nevertheless, ΔF/Fm′ also dropped at temperatures below 8°C, suggesting light sensitivity under chilling temperatures because Fv/Fm remained high. Photosynthesis–irradiance responses at 24°C under red (660 nm), green (525 nm), blue (450 nm) and white light (metal halide lamp) showed that maximum net photosynthesis under blue and white light was greater than under red and green light, indicating the sensitivity and photosynthetic availability of blue light in the subtidal light environment. In the desiccation experiment, samples under aerial exposure of up to 8 h under dim-light at 24°C and 50% humidity showed that ΔF/Fm′ quickly declined after more than 45 min of emersion; furthermore, ΔF/Fm′ also failed to recover to initial levels even after 1 day of rehydration in seawater. Under the emersion state, the ΔF/Fm′ remained high when the relative water content (RWC) was greater than 50%; in contrast, it quickly dropped when the RWC was less than 50%. When the RWC was reduced below 50%, ΔF/Fm′ did not return to initial levels, regardless of subsequent re-hydration, suggesting a low capacity of photosynthesis to recover from desiccation. The stenohaline response of photosynthesis under 3-day culture is evident, given that ΔF/Fm′ declined when salinity was beyond 20–40 psu. Adaptation to subtidal environments in temperate waters of Japan can be linked to these traits. 相似文献
4.
Although macrophytes are known to increase benthic diversity in lakes, the importance of this resource as food for the insects living at the bottom of these ecosystems are still poorly understood. This study assessed the diets of benthic Chironomidae and Campsurus (Ephemeroptera) in two environments: a lake with macrophytes (M+) and another without macrophytes (M?). We expected a differential use of food resources in M+, where plant tissue is particularly important for the aquatic insects’ diet. The diet of 734 individuals from 16 taxa were analyzed. Contrary to expectations, benthic insects consumed low amounts of plant tissue. This finding led us to investigate whether the presence of macrophytes in lakes would indirectly contribute to the benthic insects’ feeding, as more food resources were explored in M+ and a spatial variation of resources intake was observed in this lake, in contrast to the homogeneous feeding in M?. We highlight that macrophytes were responsible for the organic matter build‐up in the sediment, especially at the lake region dominated by these plants, and contributed to increase the deposition of high‐quality amorphous organic matter, which favored taxa in M+ that fed exclusively on this item. The lower diversity of food items exploited in M?, and the Tanypus alga‐based diet in this lake, indicates the low quality of organic resources in its sediment. Although macrophytes were indirectly beneficial for benthic insects’ feeding, we found that this is not an attractive resource for prompt ingestion by most benthic taxa. 相似文献
5.
Masayoshi Ishida Michio Shimabukuro Shusuke Yagi Sachiko Nishimoto Chisayo Kozuka Daiju Fukuda Takeshi Soeki Hiroaki Masuzaki Masato Tsutsui Masataka Sata 《PloS one》2014,9(11)
Aims
Mechanisms regulating adiponectin expression have not been fully clarified. MicroRNAs (miRNAs), small non-coding RNAs that regulate gene expression, are involved in biological processes, including obesity and insulin resistance. We evaluated whether the miRNA-378 pathway is involved in regulating adiponectin expression.Methods and Results
First, we determined a putative target site for miRNA-378 in the 3 prime untranslated region (3''UTR) of the adiponectin gene by in silico analysis. The levels of adiponectin mRNA and protein were decreased in 3T3-L1 cells overexpressing the mimic of miRNA-378. Luminescence activity in HEK293T cells expressing a renilla-luciferase-adiponectin-3''UTR sequence was inhibited by overexpressing the mimic of miRNA-378, and the decrease was reversed by adding the inhibitor of miRNA-378. Moreover, we confirmed the inhibitory effects of the mimic were cancelled in a deleted mutant of the miR-378 3′-UTR binding site. Addition of tumor necrosis factor-α (TNFα) led a upregulation of miR-378 and downregulation of adiponectin at mRNA and protein levels in 3T3-L1 cells. Level of miR-378 was higher and mRNA level of adiponectin was lower in diabetic ob/ob mice than those of normal C57BL/6 mice and levels of miR378 and adiponectin were negatively well correlated (r = −0.624, p = 0.004).Conclusions
We found that levels of miRNA-378 could modulate adiponectin expression via the 3''UTR sequence-binding site. Our findings warrant further investigations into the role of miRNAs in regulating the adiponectin expression. 相似文献6.
Effects of diclofop and diclofop-methyl on the membrane potentials of wheat and oat coleoptiles 总被引:1,自引:5,他引:1
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Electrophysiological measurements were made on the mesophyll cells of wheat (Triticum aestivum L. cv Waldron) and oat (Avena sativa L. cv Garry) coleoptiles treated either with the herbicide diclofop-methyl (methyl 2-(4-(2′,4′-dichlorophenoxy)phenoxy)propanoate), or it's primary metabolite diclofop, (2-(4-(2′,4′-dichlorophenoxy)phenoxy)-propanoic acid). Application of a 100 micromolar solution of diclofop-methyl to wheat coleoptiles had little or no effect on the membrane potential (EM), however in oat, EM slowly depolarized to the diffusion potential (ED). At pH 5.7, 100 micromolar diclofop rapidly abolished the electrogenic component of the membrane potential in both oat and wheat coleoptiles with half-times of 5 to 10 minutes and 15 to 20 minutes, respectively. The concentrations giving half-maximal depolarizations in wheat were 20 to 30 micromolar compared to 10 to 20 micromolar in oat. The depolarizing response was not due to a general increase in membrane permeability as judged from the EM's response to changes in K+, Na+, Cl−, and SO42−, before and after treatment with diclofop and from its response to KCN treatment. In both plants, diclofop increased the membrane permeability to protons, making the EM strongly dependent upon the external pH in the range of pH 5.5 to pH 8.5. The effects of diclofop can best be explained by its action as a specific proton ionophore that shuttles protons across the plasmalemma. The rapidity of the cell's response to both diclofop-methyl (15-20 minutes) and diclofop (2-5 minutes) makes the ionophoric activity a likely candidate for the earliest herbicidal event exhibited by these compounds. 相似文献
7.
Reciprocal Antagonism between the Herbicides, Diclofop-Methyl and 2,4-D, in Corn and Soybean Tissue Culture
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The antagonistic interaction between the grass herbicide, diclofopmethyl (methyl 2-[4(2′,4′-dichlorophenoxy)phenoxy]propanoate) (DM), and 2,4-dichlorophenoxyacetic acid (2,4-D), was demonstrated in DM-resistant soybean (Glycine max [L.] Merr.) and DM-susceptible corn (Zea mays L.). 2,4-D caused root shortening and thickening, and induced callus growth in soybean and corn root tissue cultures at 1 and 10 micromolar. Normal soybean root growth was unaffected by 10 micromolar DM whereas corn root growth was inhibited completely by 1 to 10 micromolar DM. DM at 10 micromolar reversed completely the induction of callus growth by 1 micromolar 2,4-D in soybean roots. In corn, 10 micromolar 2,4-D reversed the growth inhibiting activity of 1 micromolar DM and induced callus growth. The antagonistic interaction between DM and 2,4-D was reciprocal and the activity of either compound depended upon the relative concentration of the other. 2,4-D did not antagonize or decrease the activity of DM by decreasing its uptake by root tissues or increasing the rate of its detoxication. The antagonistic interaction between DM and 2,4-D probably involves involves cellular activity associated with actively growing and proliferating cells and requires the presence of both compounds at the sensitive site. 相似文献
8.
Summary Localization of carbonic anhydrase activity was studied electron microscopically on cells of the rat choroid plexus epithelium. For the ultracytochemical detection of these activities, Yokota's technique (1969), which is the modification of Hansson's method (1967) was employed. Numerous electron dense reaction products were observed in the microvilli of the choroidal epithelial cell. The reaction deposits were also remarkably present in the infoldings of the basal plasmalemma but to a lesser extent than in the microvilli. The localization sites were mainly on the plasma membrane, but some reaction products were also observed in the cytoplasm near the plasma membrane. Hardly any reaction product was found in the intracellular organelles except for the mitochondria in which reaction products were occasionally observed on the cristae. These activities were completely inhibited by acetazolamide. As the carbonic anhydrase activity was histochemically seen in the microvilli and the basal infoldings, it is likely that carbonic anhydrase is related to an active transport process in the secretion of cerebrospinal fluid as is Na+, K+-ATPase (Masuzawa et al. 1980). 相似文献
9.
Okumura Y Hayama M Takahashi E Fujiuchi M Shimabukuro A Yano M Kido H 《The Biochemical journal》2006,400(3):551-561
10.
Oku H Futamori N Masuda K Shimabukuro Y Omine T Iwasaki H 《Bioscience, biotechnology, and biochemistry》2003,67(10):2106-2114
It was found that the partially purified beta-ketoacyl-ACP synthase of Bacillus insolitus did not require the addition of FabD (malonyl-CoA:ACP transacylase, MAT) for the activity assay. This study therefore examined the necessity of FabD protein for in vitro branched-chain fatty acid (BCFA) biosynthesis by crude fatty acid synthetases (FAS) of Bacilli. To discover the involvement of FabD in the BCFA biosynthesis, the protein was removed from the crude FAS by immunoprecipitation. The His-tag fusion protein FabD of Bacillus subtilis was expressed in Escherichia coli and used for the preparation of antibody. The rabbit antibody raised against the expressed fusion protein specifically recognized the FabD in the crude FAS of B. subtilis. Evaluation of the efficacy of the immunoprecipitation showed that a trace of FabD protein was present in the antibody-treated crude FAS. However, this complete removal of FabD from the crude FAS did not abolish its BCFA biosynthesis, but only reduced the level to 50-60% of the control level for acyl-CoA primer and to 80% for alpha-keto-beta-methylvalerate primer. Furthermore, the FabD concentration did not necessarily correlate with the MAT specific activity in the enzyme fractions, suggesting the presence of another enzyme source of MAT activity. This study, therefore, suggests that FabD is not the sole enzyme source of MAT for in vitro BCFA biosynthesis, and implies the existence of a functional connection between fatty acid biosynthesis and another metabolic pathway. 相似文献