Modification of alternative splicing in bovine somatic cell nuclear transfer embryos using engineered CRISPR-Cas13d

Animal cloning can be achieved by somatic cell nuclear transfer(SCNT), but the resulting live birth rate is relatively low. We previously improved the efficiency of bovine SCNT by exogenous melatonin treatment or by overexpression of lysine-specific demethylase 4D(KDM4D) and 4E(KDM4E). In this study, we revealed abundant alternative splicing(AS) transitions during fertilization and embryonic genome activation, and demonstrated abnormal AS in bovine SCNT embryos compared with in vitro fertilized ...     

Disease-driven detection of differential inherited SNP modules from SNP network

Detection of the synergetic effects between variants, such as single-nucleotide polymorphisms (SNPs), is crucial for understanding the genetic characters of complex diseases. Here, we proposed a two-step approach to detect differentially inherited SNP modules (synergetic SNP units) from a SNP network. First, SNP-SNP interactions are identified based on prior biological knowledge, such as their adjacency on the chromosome or degree of relatedness between the functional relationships of their genes. These interactions form SNP networks. Second, disease-risk SNP modules (or sub-networks) are prioritised by their differentially inherited properties in IBD (Identity by Descent) profiles of affected and unaffected sibpairs. The search process is driven by the disease information and follows the structure of a SNP network. Simulation studies have indicated that this approach achieves high accuracy and a low false-positive rate in the identification of known disease-susceptible SNPs. Applying this method to an alcoholism dataset, we found that flexible patterns of susceptible SNP combinations do play a role in complex diseases, and some known genes were detected through these risk SNP modules. One example is GRM7, a known alcoholism gene successfully detected by a SNP module comprised of two SNPs, but neither of the two SNPs was significantly associated with the disease in single-locus analysis. These identified genes are also enriched in some pathways associated with alcoholism, including the calcium signalling pathway, axon guidance and neuroactive ligand-receptor interaction. The integration of network biology and genetic analysis provides putative functional bridges between genetic variants and candidate genes or pathways, thereby providing new insight into the aetiology of complex diseases.     

Molecular Cloning of Novel Cellulase Genes <Emphasis Type="Italic">cel</Emphasis>9A and <Emphasis Type="Italic">cel</Emphasis>12A from <Emphasis Type="Italic">Bacillus licheniformis</Emphasis> GXN151 and Synergism of Their Encoded Polypeptides

A thermophilic bacterial strain GXN151 which could degrade Avicel efficiently was isolated and identified as Bacillus licheniformis. A genomic library of GXN151 was constructed and two novel endoglucanase genes designated cel9A and cel12A were isolated by screening the library on carboxylmethyl cellulase indicator plates. The analysis of amino acid sequences deduced from the genes indicated that Cel9A consisted of a catalytic domain belonging to glycosyl hydrolase family 9, a linker domain, and a carbohydrate binding module family 3 from N-terminal to C-terminal; Cel12A had only one catalytic domain belonging to glycosyl hydrolase family 12. The combinations of Cel9A and Cel12A produced by the recombinant E. coli exhibited synergistic action against substrates of carboxylmethyl cellulose as well as Avicel.     

基于动力学模型的法夫酵母发酵生产虾青素的补料策略优化

对法夫酵母的不同补料发酵方式进行了研究.基于底物抑制模型,提出了一种优化的两阶段补料策略,用于法夫酵母产虾青素的高密度发酵.在发酵的延迟期和对数生长期早期,糖浓度控制在25 g/L左右,在此条件下,生物量可以达到最大,且时间缩短.在对数生长期后期及稳定期,糖浓度控制在5 g/L,虾青素的合成时间可以有效延长.与传统的补料方式相比,采用此补料策略取得了较好的发酵效果.发酵终点细胞干重达到23.8g/L,虾青素产量达到29.05 mg/L,分别比分批发酵提高了52.8%和109%.     

宁夏引黄灌区秸秆还田对麦田土壤硝态氮淋失的影响

以宁夏引黄灌区为例,探索秸秆还田条件下冬小麦土壤硝态氮淋失规律。试验设置常规施肥(CK)、常规施肥条件下施用4500kg/hm2(T1,半量还田)和9000 kg/hm2(T2,全量还田)秸秆3个处理。利用树脂芯法吸附10、20、30、60cm和90cm土层的硝态氮流失量。结果表明:硝态氮(纯N)淋失量6.26—12.85 kg/hm2,是冬小麦施用化肥氮量的2.78%—5.71%。与对照CK相比,T1和T2在10cm土层减少0.09%和3.97%;20cm土层减少8.51%和9.81%;30cm土层减少2.25%和10.34%;60cm土层减少23.85%和13.08%;90cm土层减少27.65%和20.73%。10cm和20cm土层,处理与对照以及处理之间均未到显著性差异(P0.05);30cm处理,T1与CK以及T1与T2未达到显著性差异,但T2与CK达到显著性差异表明全量还田效果最好;60cm土层,处理与对照、以及处理之间均达到显著性差异;90cm土层,处理与对照之间达到显著性差异,处理之间未达到显著性差异。硝态氮淋失主要发生在冬小麦返青至灌浆期间,占全生育期淋失量的52.95%—67.79%。T1、T2冬小麦产量增产率分别为10.11%与11.51%。可见,稻秆还田能够减少灌区土壤硝态氮淋失量。     

党参染色体核型分析

对党参细胞染色体进行了核型分析。研究表明,党参染色体数为2 n=16。染色体的核型为2n=12m 4 sm=16。第1、2、3、4、5、8对是中间着丝粒染色体(m);第6对和第7对染色体属于近中着丝点染色体,未观察到有携带随体的染色体存在。     

晋西黄土区土地利用对降雨入渗产流模式和优先流分布的影响试验研究

黄土高原退耕还林(草)工程显著改变了河川径流过程,但其作用机制尚不明晰。选取晋西黄土区4种典型下垫面(20年和30年刺槐人工林地、草地、休耕地)分别开展连续3场模拟降雨试验,观测坡面入渗产流过程,并结合染色示踪和图像处理软件技术,分析土地利用类型对坡面降雨入渗产流模式和优先流分布的影响。结果表明：(1)累积入渗量和优先流发育程度均表现为刺槐林地>草地>休耕地,刺槐林地优先流对总入渗的贡献是草地和休耕地的2.5—4.5倍,但优先流贡献均不超过10%,仍以基质流入渗为主。(2)4种用地类型降雨入渗主要补给地表60—70cm土层,前期降雨均匀增加表层土壤含水率,而后期降雨补给深层土壤水分的空间变异性显著增强。(3)刺槐林地产流量及径流系数均显著小于草地和休耕地,且前期含水量对20年刺槐林地的影响较小,而显著影响草地和休耕地径流系数。(4)直径d<1mm的细根显著促进降雨入渗和优先流发育,而d>5mm的粗根与入渗量和基质流量呈显著负相关。较高的土壤初始含水率、容重和粘粒含量会抑制入渗和优先流的发生。研究说明不同土地利用类型将改变降雨入渗产流过程及土壤水运动形式。     

基于遥感与地理信息数据的科尔沁沙地生态环境状况动态评价

科尔沁沙地处于蒙古、华北与兴安植物区系交汇处,是蒙古高原向东北平原的过渡区,具有丰富的生物多样性,属于典型农牧交错区,亦是东北平原的重要生态屏障。建国以来,受全球气候变化以及城镇化扩张、草原开垦及过度放牧等多重因素影响导致该区生态退化,生态系统服务功能下降。为此,利用遥感和地理信息数据,采用综合评估的方法,对近30年该区重大生态修复工程的实施过程及修复效果进行科学评估,具有重要的理论与实践意义。研究结果表明：1990、2000、2010、2015、2020年该区生态环境指数分别为75.19、70.20、73.51、74.27和74.7,其生态环境的变化可大致分为3个阶段,即退化期(1990—2000年)、恢复期(2000—2010年)和稳定期(2010—2020年)。2000年后,多项国家重点生态工程的实施对生态环境的改善具有明显推动作用,即科尔沁沙地生态环保工程的保护成效显著。城市化进程加快和水资源短缺是该区生态环境改善的主要制约因素,生态保护和地下水资源利用工程的实施仍需加强。研究可为科尔沁沙地生态保护和修复提供科学依据和实践参考。     

退化高寒草甸关键生态属性对多途径恢复措施的响应特征

高寒草甸是青藏高原的主体植被类型,但退化态势较为严峻,严重威胁青藏高原生态屏障的战略地位。退化高寒草甸的复健是世界性难题,治理效果也因退化状态、恢复措施及气候环境而异。以春季休牧、秋季休牧、畜群结构优化、减畜轮牧、围栏封育及翻耕改建等典型多途径恢复措施下的退化高寒草甸为对象,系统探讨主要生态要素和生态功能的响应特征及潜在过程。结果表明,典型恢复措施下退化高寒草甸的植被生产力、土壤有机碳密度及土壤饱和持水量等生态要素都得到一定程度的提升,而恢复效果与实施年限及恢复措施密切相关。围栏封育和翻耕改建下土壤有机碳密度及饱和持水量随恢复年限均表现为对数饱和型的响应特征,退化高寒草甸固碳持水功能的基本恢复年限约为6—10年。春季休牧、秋季休牧、畜群结构优化、减畜轮牧、围栏封育等放牧管理恢复措施应适用于轻度退化至重度退化的高寒草甸,而翻耕改建则是极度退化高寒草甸的适宜治理措施。由于多途径恢复措施的关注目标不同,今后研究应集中在恢复措施的组合优化和综合评价等方面。