Rock paper scissors: CRISPR/Cas9-mediated interference with geminiviruses in plants

<正>Geminiviruses are a group of circular single-stranded DNA viruses that constitute the largest family of plant viruses.Many diseases resulting from geminivirus infections, such as maize streak disease, cassava mosaic disease, tomato yellow leaf curl disease and cotton leaf curl diseases, cause significant problems in terms of economic losses, posing a serious threat to global crop productivity (Hanley-Bowdoin et al., 2013; Yang et al., 2019). As obligate intracellular     

A Novel Hyaluronidase Produced by Bacillus sp. A50

Hyaluronidases are a family of enzymes that degrade hyaluronic acid (hyaluronan, HA) and widely used in many fields. A hyaluronidase producing bacteria strain was screened from the air. 16S ribosomal DNA (16S rDNA) analysis indicated that the strain belonged to the genus Bacillus, and the strain was named as Bacillus sp. A50. This is the first report of a hyaluronidase from Bacillus, which yields unsaturated oligosaccharides as product like other microbial hyaluronate lyases. Under optimized conditions, the yield of hyaluronidase from Bacillus sp. A50 could reach up to 1.5×10⁴ U/mL, suggesting that strain A50 is a good producer of hyaluronidase. The hyaluronidase (HAase-B) was isolated and purified from the bacterial culture, with a specific activity of 1.02×10⁶ U/mg protein and a yield of 25.38%. The optimal temperature and pH of HAase-B were 44°C and pH 6.5, respectively. It was stable at pH 5–6 and at a temperature lower than 45°C. The enzymatic activity could be enhanced by Ca²⁺, Mg²⁺, or Ni²⁺, and inhibited by Zn²⁺, Cu²⁺, EDTA, ethylene glycol tetraacetic acid (EGTA), deferoxamine mesylate salt (DFO), triton X-100, Tween 80, or SDS at different levels. Kinetic measurements of HAase-B towards HA gave a Michaelis constant (K _m) of 0.02 mg/mL, and a maximum velocity (V _max) of 0.27 A ₂₃₂/min. HAase-B also showed activity towards chondroitin sulfate A (CSA) with the kinetic parameters, K _m and V _max, 12.30 mg/mL and 0.20 A ₂₃₂/min respectively. Meanwhile, according to the sequences of genomic DNA and HAase-B’s part peptides, a 3,324-bp gene encoding HAase-B was obtained.     

赤霉素产生菌~#85104菌株原生质体的形成再生和紫外光对原生质体诱变条件的研究

赤霉产生菌在正常条件下不产生孢子,育种材料以多核菌丝体及其碎片为主,大部分常用的诱变剂对它们诱变效应较差。本文报导有关赤霉素产生菌~#85104菌株原生质体的获得、再生和紫外光诱变原生质体的条件,甘氨酸对菌丝体生长的影响,以及采用二硫苏糖醇预处理菌丝体等方面条件的研究。在采用紫外光照射原生质体的诱变处理下,已获得数株高产的新菌株。     

艰难梭菌荚膜多糖单糖组成的气相色谱分析

本文对两株艰难梭菌（ＣｄＡ３１８和ＣｄＣＤＣ２７９）荚膜多糖进一步分析,结果证实纯化的艰难梭菌荚膜多糖为单一均匀的物质;经气相色谱分析表明,其单糖组分主要由Ｄ－葡萄糖、Ｄ－甘露糖和Ｄ－半乳糖组成,不同菌株的荚膜多糖可能有微小差异。     

马铃薯Y病毒组病毒高产量提取方法的建立

本文报道了高产量提取芜菁花叶病毒（ＴｕＭＶ）、莴苣花叶病毒（ＬＭＶ）、芋花叶病毒（ＤＭＶ）和大豆花叶病毒（ＳＭＶ）的提取方法。本方法通过使用高盐浓度的磷酸盐缓冲液以及在缓冲液中加入氯化镁和脲,并用ＴｒｉｔｏｎＸ－１００作为澄清剂,替代常规使用的氯仿和正丁醇,成功的提取到了大量病毒粒子,上述四种病毒提取的得率分别是ＴｕＭＶ为１７３．３ｍｇ／ｋｇ病叶,ＬＭＶ为９６ｍｇ／ｋｇ病叶,ＳＭＶ为１９９．２ｍｇ／ｋｇ病叶,ＤＭＶ为１７６．６ｍｇ／ｋｇ病叶。     

MicroRNA‐183‐5p is stress‐inducible and protects neurons against cell death in amyotrophic lateral sclerosis

Amyotrophic lateral sclerosis (ALS) is a fatal neurodegenerative disease characterized by the death of motor neurons. A fundamental pathogenesis of ALS is the prolonged cell stress in neurons, which is caused by either accumulation of protein aggregates or reactive oxygen species. However, the mechanistic link between stress sensing and cell death is unsettled. Here, we identify that miR‐183‐5p, a neuron‐enriched miRNA, couples stress sensing and cell death programming in ALS. miR‐183‐5p is immediately induced by hydrogen peroxide, tunicamycin or TNF‐α in neurons. The overexpression of miR‐183‐5p increases neuron survival under stress conditions, whereas its knockdown causes neuron death. miR‐183‐5p coordinates apoptosis and necroptosis pathways by directly targeting PDCD4 and RIPK3, and thus protects neurons against cell death under stress conditions. The consistent reduction of miR‐183‐5p in ALS patients and mouse models enhances the notion that miR‐183‐5p is a central regulator of motor neuron survival under stress conditions. Our study supplements current understanding of the mechanistic link between cell stress and death/survival, and provides novel targets for clinical interventions of ALS.     

沼泽湿地恢复演替过程中朝天委陵菜间隔子性状与分枝强度的关系

间隔子和分株影响克隆植物的空间分布和资源获取,二者之间关系的研究有助于理解克隆植物的生态适应机制。按照恢复时间设置I(5a)、II(15a)、III(25a)3个梯度,研究了永昌北海子国家湿地公园沼泽湿地恢复演替过程中朝天委陵菜(Potentilla supina)间隔子长度、直径与分枝强度之间的关系。结果表明:随着沼泽湿地恢复演替的进行,湿地群落的高度、盖度和生物量逐渐增大,土壤含水量、有机质逐渐增大,土壤容重逐渐降低;湿地群落的优势植物种群由朝天委陵菜转为黑麦草;朝天委陵菜间隔子长度和直径增大,分株数减小;间隔子长度、直径与分枝强度均呈显著负相关关系(P0.05)。沼泽湿地恢复演替过程中,朝天委陵菜由选择垄断区域资源转向逃避或忍耐不利生境,体现了湿地克隆植物在异质性生境中独特的适应性。     

林麝源支气管败血波氏杆菌FMDBb1株的分离鉴定及全基因组序列分析

[背景] 呼吸系统疾病是圈养麝常见疾病之一,其中部分由支气管败血波氏杆菌引起,但目前关于林麝源支气管败血波氏杆菌的研究甚少。[目的] 对分离自患病林麝鼻黏液的一株疑似支气管败血波氏杆菌进行分离鉴定和全基因组序列分析,为林麝相关疾病的防治奠定基础。[方法] 将病原菌纯化培养后,通过菌落形态和生化试验初步鉴定病原菌类型,然后进行药敏试验和小鼠致病性试验以观察其耐药和毒力表型,最后对其进行全基因组测序,通过平均核苷酸一致性（Average Nucleotide Identity,ANI）比对在全基因组水平进一步评估物种间的亲缘关系,并进行基因功能注释和遗传进化分析。[结果] 该病原菌经ANI分类属于经典波氏杆菌亚种,结合菌落形态和生化结果综合鉴定为支气管败血波氏杆菌,菌株命名为FMDBb1,药敏表型显示其对林可霉素、利福平及大多数β-内酰胺类抗生素耐药,对小鼠的半数致死量为8.55×10⁶ CFU。全基因组测序显示该菌基因组大小为5 133 936 bp,基因功能注释显示其拥有强代谢能力,基因组内检测到65个经典波氏杆菌毒力因子,以及1个粉霉素和1个利福平的靶向耐药基因,同时发现19个插入序列和1个噬菌体区域的存在。序列类型为ST33,克隆复合体类型为CC6,管家基因联合建树分析显示与分离于韩国短毛猫的KVNON-570株相似性最高。[结论] 研究分离了林麝源支气管败血波氏杆菌并对其进行了全基因组测序及分析,为该病原菌感染的防治提供了宝贵的信息。     

用于新型冠状病毒检测的核酸等温扩增技术研究进展

核酸检测作为新型冠状病毒肺炎(COVID-19)筛查诊断和病情监测的主要手段,在疫情防控中发挥了重要作用。虽然实时荧光定量PCR被认为是新型冠状病毒(SARS-CoV-2)核酸检测的金标准,但其依赖荧光定量PCR仪且扩增检测时间较长,难以实现现场快速检测。因此许多基于核酸等温扩增的SARS-CoV-2检测方法相继诞生。等温扩增对仪器温控要求不高,通过与微流控芯片和可视化检测技术结合,可进一步简化操作、降低成本,为SARS-CoV-2现场快速筛查提供有力的技术支撑。本文围绕已报道的SARS-CoV-2等温扩增检测方法原理、检测性能及优缺点进行探讨,为进一步发展SARS-CoV-2现场快速检测平台提供参考。