Salmonella Typhimurium strain expressing OprF‐OprI protects mice against fatal infection by Pseudomonas aeruginosa

Pseudomonas aeruginosa poses a major threat to human health and to the mink industry. Thus, development of vaccines that elicit robust humoral and cellular immunity against P. aeruginosa is greatly needed. In this study, a recombinant attenuated Salmonella vaccine (RASV) that expresses the outer membrane proteins fusion OprF_190–342‐OprI_21–83 (F1I2) from P. aeruginosa was constructed and the potency of this vaccine candidate assessed by measuring F1I2‐specific humoral immune responses upon vaccination through s.c. or oral routes. S.C. administration achieved higher serum IgG titers and IgA titers in the intestine and induced stronger F1I2‐specific IgG and IgA titers in lung homogenate than did oral administration, which resulted in low IgG titers and no local IgA production. High titers of IFN‐γ, IL‐4, and T‐lymphocyte subsets induced a mixed Th1/Th2 response in mice immunized s.c., indicating elicitation of cellular immunity. Importantly, when immunized mice were challenged with P. aeruginosa by the intranasal route 30 days after the initial immunization, s.c. vaccination achieved 77.78% protection, in contrast to 41.18% via oral administration and 66.67% via Escherichia coli‐expressed F1I2 (His‐F1I2) vaccination. These results indicate that s.c. vaccination provides a better protective response against P. aeruginosa infection than do oral administration and the His‐F1I2 vaccine.     

Reproducible cancer biomarker discovery in SELDI-TOF MS using different pre-processing algorithms

Background

There has been much interest in differentiating diseased and normal samples using biomarkers derived from mass spectrometry (MS) studies. However, biomarker identification for specific diseases has been hindered by irreproducibility. Specifically, a peak profile extracted from a dataset for biomarker identification depends on a data pre-processing algorithm. Until now, no widely accepted agreement has been reached.

Results

In this paper, we investigated the consistency of biomarker identification using differentially expressed (DE) peaks from peak profiles produced by three widely used average spectrum-dependent pre-processing algorithms based on SELDI-TOF MS data for prostate and breast cancers. Our results revealed two important factors that affect the consistency of DE peak identification using different algorithms. One factor is that some DE peaks selected from one peak profile were not detected as peaks in other profiles, and the second factor is that the statistical power of identifying DE peaks in large peak profiles with many peaks may be low due to the large scale of the tests and small number of samples. Furthermore, we demonstrated that the DE peak detection power in large profiles could be improved by the stratified false discovery rate (FDR) control approach and that the reproducibility of DE peak detection could thereby be increased.

Conclusions

Comparing and evaluating pre-processing algorithms in terms of reproducibility can elucidate the relationship among different algorithms and also help in selecting a pre-processing algorithm. The DE peaks selected from small peak profiles with few peaks for a dataset tend to be reproducibly detected in large peak profiles, which suggests that a suitable pre-processing algorithm should be able to produce peaks sufficient for identifying useful and reproducible biomarkers.     

基于生态通道模型的长江口水域生态系统结构与能量流动分析

利用Ecopath with Ecosim在前期研究的基础上构建了3个时期(2000年秋、2006年秋、2012年秋)长江口水域生态系统的生态通道模型,分析对比了三峡工程蓄水前中后期,长江口水域生态系统结构与能量流动特征。模型将长江口水域生态系统划分为鱼类、虾类、蟹类、头足类、底栖动物、浮游动物、浮游植物、碎屑等17个功能组,基本覆盖了长江口生态系统能量流动的主要途径。模型结果分析表明:蓄水前中后期,长江口水域生态系统各功能组营养级组成和分布相近,但由于长江口渔业过度捕捞,蓄水中后期多数功能组的生态营养转换率被动提高。长江口渔获物的组成未发生明显变化,但渔获物的平均营养级降低,渔获量减少。蓄水中后期,生态系统中牧食食物链的重要性增加,碎屑食物链的重要性降低,这与蓄水之后长江入海径流改变、泥沙量减少、陆源污染增加关系密切。结果表明,蓄水前中后期,生态系统均处于不成熟阶段,蓄水后生态系统总生物量、初级生产量及流向碎屑的能量呈降低趋势,但系统的净效率和再循环率升高。     

大型奶牛场粪便厌氧消化工程的研究

本文报导了大型牛场粪便厌氧消化工程研究的概况。该工程针对牛粪草多、浮渣多的特点设计了除长草、除浮渣装置。以保证了厌氧消化的稳定运行。工程每天可处理奶牛粪便８０余吨、鸡粪及工业发酵废渣２０余吨,生产沼气供应２８６８户职工家庭作燃气使用,平均沼气率为１．２ｍ＾３／ｍ＾３．ｄ。经后处理的发酵残留物被充分利用,制成肥料、绿色营养土和鱼饵,这样既免除了二次污染,又提高了工程的经济效益。该工程为我国大中型沼气     

How do different nitrogen application levels and irrigation practices impact biological nitrogen fixation and its distribution in paddy system?

Plant and Soil - Although phytolith analysis is a promising tool for reconstructing the palaeovegetation in grassland ecosystems, no phytolith study has yet attempted to quantitatively reconstruct...     

MicroRNA‐1271 suppresses the proliferation and invasion of colorectal cancer cells by regulating metadherin/Wnt signaling

Recent studies have reported an important role for microRNA‐1271 (miR‐1271) in tumorigenesis. However, the role of miR‐1271 in colorectal cancer remains unknown. Here, we found that miR‐1271 was significantly decreased in colorectal cancer tissues and cell lines. Overexpression of miR‐1271 inhibited cell proliferation, colony formation, cell invasion, and induced cell cycle arrest in colorectal cancer cells. Metadherin (MTDH) was identified as a target gene of miR‐1271. Moreover, miR‐1271 negatively regulated MTDH expression in colorectal cancer cells and reversely correlated with MTDH expression in colorectal cancer specimens. Additionally, miR‐1271 also regulated the activation of Wnt signaling in colorectal cancer cells. The restoration of MTDH expression significantly reversed the antitumor effect of miR‐1271 in colorectal cancer cells. These findings indicate an important role for miR‐1271/MTDH in the tumorigenesis of colorectal cancer, and suggest that miR‐1271 may be a novel therapeutic target for colorectal cancer.     

鄱阳湖水利枢纽工程建设对草鱼江湖洄游潜在的影响

鄱阳湖是长江四大家鱼索饵、育肥的重要场所,近年来鄱阳湖出现了枯水季水位严重降低、枯水期延长、湿地面积缩小的现象。为解决鄱阳湖水资源、水文、水生态等问题,建议在鄱阳湖入江水道兴建控制闸水利枢纽。然而,拟建的水利枢纽工程将打破鄱阳湖与长江的天然连通性,可能会对四大鱼类洄游过程产生影响。通过构建二维和三维水动力模型,分析鄱阳湖水利枢纽建设后入江水道与枢纽洄游通道的水动力学特征,结合实验和文献获得的草鱼幼鱼和成鱼游泳能力参数,阐明了枢纽建设对草鱼洄游的影响。结果表明:在设计调度模式下,草鱼幼鱼入湖期间,湖口段适宜通过天数达到83.74%以上,说明湖口及入江水道的水动力条件对洄游的影响较小,同时,枢纽工程处在过鱼高峰期仍能保持较高的过闸效率;草鱼成鱼出湖期间,丰、平水年闸前水动力条件对洄游的影响较小,仅在枯水年闸前流速几乎静止,草鱼适宜出湖天数偏低。在该调度模式下,水利枢纽建设运行后鄱阳湖整体水动力条件能够满足草鱼洄游需求。目前设计的鱼道在高、低水位时期均出现局部流速过大的现象,不满足过鱼条件。从四大家鱼江湖洄游的角度为鄱阳湖水利枢纽工程设计和运行提供科学参考。     

Establishment and optimization of a regionally applicable maize gene-flow model

Because of the rapid development of transgenic maize, the potential effect of transgene flow on seed purity has become a major concern in public and scientific communities. Setting a proper isolation distance in field experiments and seed production is a possible solution to meet seed-quality standards and ensure adventitious contamination of products is below a specific threshold. By using a Gaussian plume model as basis and data recorded by meteorological stations as input, we have established a simple regionally applicable maize gene-flow model for prediction of the maximum threshold distances (MTD) at which gene-flow frequency is equal to or lower than a threshold value of 1 or 0.1 % (MTD_1%, MTD_0.1%). After optimization of the model variables, simulated outcrossing rate was a good fit to data obtained from field experiments (y = 1.156x, R ² = 0.8913, n = 30, P < P _0.01). In the process of model calibration, it was found that only 15.82 % of the total amount of the pollen released by each plant participated in the dispersal process. The variable “a” for genetic pollen competitiveness between donor and recipient was introduced into our model, for the “Zinuo18” and “Su608” used, “a” was 17.47. Finally, the model was successfully used in the spring maize-growing region of Northeast China. The range of MTD_1% and MTD_0.1% in this region varied from 10 m to 49 m and from 17 m to 125 m, respectively.     

Exome sequencing identifies compound heterozygous mutations in CYP4V2 in a pedigree with retinitis pigmentosa

Retinitis pigmentosa (RP) is a heterogeneous group of progressive retinal degenerations characterized by pigmentation and atrophy in the mid-periphery of the retina. Twenty two subjects from a four-generation Chinese family with RP and thin cornea, congenital cataract and high myopia is reported in this study. All family members underwent complete ophthalmologic examinations. Patients of the family presented with bone spicule-shaped pigment deposits in retina, retinal vascular attenuation, retinal and choroidal dystrophy, as well as punctate opacity of the lens, reduced cornea thickness and high myopia. Peripheral venous blood was obtained from all patients and their family members for genetic analysis. After mutation analysis in a few known RP candidate genes, exome sequencing was used to analyze the exomes of 3 patients III2, III4, III6 and the unaffected mother II2. A total of 34,693 variations shared by 3 patients were subjected to several filtering steps against existing variation databases. Identified variations were verified in the rest family members by PCR and Sanger sequencing. Compound heterozygous c.802-8_810del17insGC and c.1091-2A>G mutations of the CYP4V2 gene, known as genetic defects for Bietti crystalline corneoretinal dystrophy, were identified as causative mutations for RP of this family.