Seasonal dynamics of soil fauna in the subalpine and alpine forests of west Sichuan at different altitudes

The climate (especially temperature) often plays an important role in the structure, function as well as composition of soil organisms in different latitudes and altitudes. As one of the essential components of soil ecosystem, soil faunal community not only lays their roles as soil engineer in material cycling and energy flow, but also acts as the sensitive bio-indicator to environmental change. However, little information has been available on the responses of soil faunal community to the changed environment at different altitudes and seasons. In order to understand the seasonal dynamics of soil faunal diversity under different forests with varying altitudes, three fir (Abies faxoniana) forests were selected covering a 600 m vertical transition zone. The primary fir forest at 3600 m (A1) of altitude, mixed fir and birch forest at 3300 m (A2) of altitude, and secondary fir forest at 3000 m (A3) of altitude are representative forests in the subalpine and alpine region of west Sichuan. A 2 years study was conducted in the three subalpine and alpine forests from May in 2009 until October in 2010. Soil samples were collected in both the soil organic layer and mineral soil layer. Soil macro-fauna were picked up by hand in the fields. Meso/micro-fauna and damp living fauna were separated and collected from the soil samples by Baermann and Tullgren methods in laboratory, respectively. A total of 74,827 individuals were collected in the 2 years, belonging to seven phyla, 16 classes, 31 orders and 125 families by preliminary identification. Similar dominant groups were detected in different forests at different altitudes, consisting of Spirostreptida, Formicidae, Staphylinidae, Hesperinidae, Onychiuridae, Isotomidae, Oribatuloidae, Alicoragiidae, Secernentea, and Adenophorea. In contrast, the ordinary species of macro-fauna and the ratios of Acarina to Collembolan were obviously different. For instance, the ordinary species were dominated by Cydmaenidae and Mycetophilidae at the A1, Scaphidiidae and Helicinidae at the A2, and Lumbricida and Agelenidae at the A3, respectively. Both the individual density and the number of soil faunal groups were significantly higher in soil organic layer than those in mineral soil layer. The density and group of macro-, meso- and micro-fauna in different forests showed the order as A2 > A1 > A3, but the density of damp living fauna showed the order as A1 > A2 > A3. The functional groups of macro-fauna were mainly dominated by saprozoic. The highest density and group of macro-fauna was observed in August, while the highest value of meso/micro-fauna was detected in October. In addition, the Jacard similarity indices showed that the composition and structure of soil fauna were similar in the different forests varied with altitudes, but the Shannon–Wiener indices were significantly different. The highest values of Shannon–Wiener indices were observed in October at both the A1 and A3, and in August at the A2. The results suggested that soil faunal community kept a high diversity in the subalpine and alpine forests of west Sichuan, and their structures were significantly affected by the variation of altitudes, which provided important scientific evidences for understanding the ecological processes in the subalpine and alpine coniferous forests.     

The emerging role of circular RNAs in cardiovascular diseases

Journal of Physiology and Biochemistry - Cardiovascular disease (CVD) is one of the vital causes of morbidity and mortality, and the number of deaths from CVD has increased worldwide. Circular RNAs...     

脊椎动物FoxO基因亚族的进化

本研究以脊椎动物FoxO作为研究对象,选取NCBI上公布的多个FoxO基因编码蛋白的核苷酸序列,重点分析Fox O蛋白质结构和功能的相似性与差异性,重建FoxO基因的系统发育树并进行选择压力分析,对FoxO基因亚族的起源和进化进行研究分析。结果显示:脊椎动物FoxO蛋白间Forhead结构域十分保守但核定位信号区结构差异较明显,尤其是FoxO6蛋白,并且多个磷酸化位点在哺乳动物FoxO6中缺失,削弱核输出信号,但在斑马鱼和原鸡的FoxO6中未缺失这些位点,推测其胞质定位调控作用仍十分重要。FoxO3中多个磷酸化位点可能与寿命延长作用相关。系统发育树表明FoxO1是FoxO基因的祖先基因,不同FoxO基因进化速率不同。选择压力分析结果显示FoxO基因过程每个位点经历不同的选择压,并且获得25个正选择位点,这些正选择位点可能对FoxO不同基因的形成和新功能的产生中具有十分重要的作用。     

Soluble CXCL16 promotes TNF‐α‐induced apoptosis in DLBCL via the AMAD10‐NF‐κB regulatory feedback loop

We had previously identified that the co‐expression of transmembrane CXCL16 (TM‐CXCL16) and its receptor CXCR6 is an independent risk factor for poor survival in patients with diffuse large B‐cell lymphoma (DLBCL). However, the impact of the soluble form of CXCL16 (sCXCL16) on the pathogenesis of DLBCL remains unknown. In the present study, the synergistic effect of sCXCL16 and tumor necrosis factor α (TNF‐α) on apoptosis in DLBCL cell lines (OCI‐LY8 and OCI‐LY10) was investigated in vitro. sCXCL16 reinforced TNF‐α‐mediated inhibition of DLBCL cell proliferation, as determined by the cell counting kit‐8 assay. The results of annexin V staining showed that sCXCL16 enhanced TNF‐α‐induced apoptosis in OCI‐LY8 and OCI‐LY10 cells through a death receptor‐caspase signaling pathway. The results of gene microarray suggested a significant upregulation of differentially expressed genes in the TNF signaling pathway. sCXCL16 increased the concentration of extracellular TNF‐α by binding to CXCR6 to activate the nuclear factor‐κB (NF‐κB) signaling pathway. TNF‐α also induced the secretion of sCXCL16 by increasing the expression of ADAM10, which is known to cleave TM‐CXCL16 to yield sCXCL16. Moreover, bioinformatics analysis revealed that elevated TNF‐α and ADAM10 expression levels in tumor tissues predicted better survival in patients with DLBCL. Thus, our study suggests that sCXCL16 enhances TNF‐α‐induced apoptosis of DLBCL cells, which may involve a positive feedback loop consisting of TNF‐α, ADAM10, sCXCL16, and members of the NF‐κB pathway. sCXCL16 and TNF‐α may be used as prognostic markers in the clinic, and their combinational use is a promising approach in the context of DLBCL therapy.     

Microglial activation-mediated delayed and progressive degeneration of rat nigral dopaminergic neurons: relevance to Parkinson's disease

The etiology of sporadic Parkinson's disease (PD) remains unknown. Increasing evidence has suggested a role for inflammation in the brain in the pathogenesis of PD. However, it has not been clearly demonstrated whether microglial activation, the most integral part of the brain inflammatory process, will result in a delayed and progressive degeneration of dopaminergic neurons in substantia nigra, a hallmark of PD. We report here that chronic infusion of an inflammagen lipopolysaccharide at 5 ng/h for 2 weeks into rat brain triggered a rapid activation of microglia that reached a plateau in 2 weeks, followed by a delayed and gradual loss of nigral dopaminergic neurons that began at between 4 and 6 weeks and reached 70% by 10 weeks. Further investigation of the underlying mechanism of action of microglia-mediated neurotoxicity using rat mesencephalic neuron-glia cultures demonstrated that low concentrations of lipopolysaccharide (0.1-10 ng/mL)-induced microglial activation and production of neurotoxic factors preceded the progressive and selective degeneration of dopaminergic neurons. Among the factors produced by activated microglia, the NADPH oxidase-mediated release of superoxide appeared to be a predominant effector of neurodegeneration, consistent with the notion that dopaminergic neurons are particularly vulnerable to oxidative insults. This is the first report that microglial activation induced by chronic exposure to inflammagen was capable of inducing a delayed and selective degeneration of nigral dopaminergic neurons and that microglia-originated free radicals play a pivotal role in dopaminergic neurotoxicity in this inflammation-mediated model of PD.     

Widespread Albedo Decreasing and Induced Melting of Himalayan Snow and Ice in the Early 21st Century

Background

The widely distributed glaciers in the greater Himalayan region have generally experienced rapid shrinkage since the 1850s. As invaluable sources of water and because of their scarcity, these glaciers are extremely important. Beginning in the twenty-first century, new methods have been applied to measure the mass budget of these glaciers. Investigations have shown that the albedo is an important parameter that affects the melting of Himalayan glaciers.

Methodology/Principal Findings

The surface albedo based on the Moderate Resolution Imaging Spectroradiometer (MODIS) data over the Hindu Kush, Karakoram and Himalaya (HKH) glaciers is surveyed in this study for the period 2000–2011. The general albedo trend shows that the glaciers have been darkening since 2000. The most rapid decrease in the surface albedo has occurred in the glacial area above 6000 m, which implies that melting will likely extend to snow accumulation areas. The mass-loss equivalent (MLE) of the HKH glacial area caused by surface shortwave radiation absorption is estimated to be 10.4 Gt yr^-1, which may contribute to 1.2% of the global sea level rise on annual average (2003–2009).

Conclusions/Significance

This work probably presents a first scene depicting the albedo variations over the whole HKH glacial area during the period 2000–2011. Most rapidly decreasing in albedo has been detected in the highest area, which deserves to be especially concerned.     

Effects of drought on the growth and resource use efficiency of two endemic species in an arid ecotone

Anthropogenic activities and environmental changes have had a significant effect on the fishery ecosystem, biological characteristics, and population dynamics of marine fishes. Overfishing threatens the sustainability of many populations. We evaluated changes in the biological characteristics, distribution, and abundance of Cleisthenes herzensteini using bottom trawl survey data collected from 1985 to 2010 in the central and southern Yellow Sea. The dominant body length of C. herzensteini during spring was 80–160 mm in 1986, 60–160 mm in 1998, and 41–80 mm and 111–170 mm in 2010. During summer, the dominant body length was 80–180 mm and 130–169 mm in 2000 and 2007, respectively. During autumn, the dominant body length was 60–160 mm, 100–180 mm, and 90–149 mm in 1985, 2000, and 2009, respectively. During winter, the dominant body length was 80–200 mm, 120–220 mm, and 100–200 mm in 1985, 1999, and 2010, respectively. The dominant body length decreased gradually from 1985 to 2010 (excluding spring, 2010), illustrating the “miniaturization” of the C. herzensteini population. Growth was significantly different between male and female individuals, with male individuals forming a “smaller-size type”. The sex ratio of C. herzensteini was relatively stable during spring and summer, but significantly different during autumn and winter. The diet of C. herzensteini also changed significantly from 1985 to 2010. During 1985–1986, the diet consisted primarily of Crangon affinis, Eualus sinensis and Gammaridae species. C. affinis, Engraulis japonicus, and Ammodytes personatus were dominant during 1998–2000, whereas C. affinis was the dominant prey species during 2009–2010. Thus, there was a clear decrease in dietary diversity, with a shift to benthos shrimp, particularly C. affinis, which accounted for 82.58% of the total diet (by weight) in 2010. The gastric vacuous rate also decreased in every season and the gonad developmental stage changed with each season. The distribution of C. herzensteini shifted northward and offshore and became more concentrated. The average catch per haul of C. herzensteini decreased in spring and autumn. The average catch per haul ranged from 1.44 kg h^-1 to 0.14 kg h^-1 in spring and the percentage by weight ranged from 6.53% to 1.28%. The average catch per haul ranged from 3.03 kg h^-1 to 0.26 kg h^-1 in autumn and the percentage by weight ranged from 8.00% to 0.60%. The average catch per haul increased significantly during summer, ranging from 0.18 kg h^-1 to 0.58 kg h^-1, with a percentage by weight of 0.03–0.80%. The average catch per haul was relatively stable in winter (around 1.00 kg h^-1), but the percentage by weight gradually increased during 1985–2010. Taken together, our results suggested that the population structure, diet composition, and distribution of C. herzensteini had been altered during the last three decades. To address this, it is essential to initiate measures to conserve the C. herzensteini resource.     

Formation of forest gaps accelerates C,N and P release from foliar litter during 4 years of decomposition in an alpine forest

High-latitude boreal and arctic surface/inland waters contain sizeable reservoirs of dissolved organic matter (DOM) and trace elements (TE), which are subject to seasonal freezing. Specifically, shallow ponds and lakes in the permafrost zone often freeze solid, which can lead to transformations in the colloidal and dissolved fractions of DOM and TE. Here, we present results from experimental freeze-thaw cycles using iron (Fe)- and DOM-rich water from thaw ponds situated in Stordalen and Storflaket palsa mires in northern Sweden. After ten cycles of freezing, 85% of Fe and 25% of dissolved organic carbon (DOC) were removed from solution in circumneutral fen water (pH 6.9) but a much smaller removal of Fe and DOC (< 7%) was found in acidic bog water (pH 3.6). This removal pattern was consistent with initial supersaturation of fen water with respect to Fe hydroxide and a lack of supersaturation with any secondary mineral phase in the bog water. There was a nearly two- to threefold increase in the low-molecular-weight (LMW) fraction of organic carbon (OC) and several TEs caused by the repeated freeze-thaw cycles. Future increases in the freeze-thaw frequency of surface waters with climate warming may remove up to 25% of DOC in circumneutral organic-rich waters. Furthermore, an increase of LMW OC may result in enhanced carbon dioxide losses from aquatic ecosystems since this fraction is potentially more susceptible to biodegradation.     

Improving solubility of NR2B amino-terminal domain of N-methyl-d-aspartate receptor expressed in Escherichia coli

The amino-terminal domains (ATDs) of N-methyl-d-aspartate (NMDA) receptors contain binding sites for modulators and may serve as potential drug targets in neurological diseases. Here, three fusion tags (6xHis-, GST-, and MBP-) were fused to the ATD of NMDA receptor NR2B subunit (ATD2B) and expressed in Escherichia coli. Each tag's ability to confer enhanced solubility to ATD2B was assessed. Soluble ATD2B was successfully obtained as a MBP fusion protein. Dynamic light scattering revealed the protein (1mg/ml) exists as monodispersed species at 25 degrees C. Functional studies using circular dichroism showed that the soluble MBP-ATD2B bound ifenprodil in a dose-dependent manner. The dissociation constants obtained for ifenprodil were similar in the absence (64nM) and presence (116nM) of saturating concentration of maltose. Moreover, the yield of soluble MBP-ATD2B is 18 times higher than the refolded 6xHis-ATD2B. We have reported a systematic comparison of three different affinity tagging strategies and identified a rapid and efficient method to obtain large amount of ATD2B recombinant protein for biochemical and structural studies.