Identification of line‐specific strategies for improving carotenoid production in synthetic maize through data‐driven mathematical modeling

Plant synthetic biology is still in its infancy. However, synthetic biology approaches have been used to manipulate and improve the nutritional and health value of staple food crops such as rice, potato and maize. With current technologies, production yields of the synthetic nutrients are a result of trial and error, and systematic rational strategies to optimize those yields are still lacking. Here, we present a workflow that combines gene expression and quantitative metabolomics with mathematical modeling to identify strategies for increasing production yields of nutritionally important carotenoids in the seed endosperm synthesized through alternative biosynthetic pathways in synthetic lines of white maize, which is normally devoid of carotenoids. Quantitative metabolomics and gene expression data are used to create and fit parameters of mathematical models that are specific to four independent maize lines. Sensitivity analysis and simulation of each model is used to predict which gene activities should be further engineered in order to increase production yields for carotenoid accumulation in each line. Some of these predictions (e.g. increasing Zmlycb/Gllycb will increase accumulated β‐carotenes) are valid across the four maize lines and consistent with experimental observations in other systems. Other predictions are line specific. The workflow is adaptable to any other biological system for which appropriate quantitative information is available. Furthermore, we validate some of the predictions using experimental data from additional synthetic maize lines for which no models were developed.     

Amyloid β / PKC-dependent alterations in NMDA receptor composition are detected in early stages of Alzheimer´s disease

Amyloid beta (Aβ)-mediated synapse dysfunction is an early event in Alzheimer’s disease (AD) pathogenesis and previous studies suggest that NMDA receptor (NMDAR) dysregulation may contribute to these pathological effects. Although Aβ peptides impair NMDAR expression and activity, the mechanisms mediating these alterations in the early stages of AD are unclear. Here, we observed that NMDAR subunit NR2B and PSD-95 levels were aberrantly upregulated and correlated with Aβ₄₂ load in human postsynaptic fractions of the prefrontal cortex in early stages of AD patients, as well as in the hippocampus of 3xTg-AD mice. Importantly, NR2B and PSD95 dysregulation was revealed by an increased expression of both proteins in Aβ-injected mouse hippocampi. In cultured neurons, Aβ oligomers increased the NR2B-containing NMDAR density in neuronal membranes and the NMDA-induced intracellular Ca²⁺ increase, in addition to colocalization in dendrites of NR2B subunit and PSD95. Mechanistically, Aβ oligomers required integrin β1 to promote synaptic location and function of NR2B-containing NMDARs and PSD95 by phosphorylation through classic PKCs. These results provide evidence that Aβ oligomers modify the contribution of NR2B to NMDAR composition and function in the early stages of AD through an integrin β1 and PKC-dependent pathway. These data reveal a novel role of Aβ oligomers in synaptic dysfunction that may be relevant to early-stage AD pathogenesis.Subject terms: Alzheimer''s disease, Extracellular signalling molecules     

Angiosperm pollen grains of San Just site (Escucha Formation) from the Albian of the Iberian Range (north-eastern Spain)

The most complete angiospermous palynological assemblage for the middle-earliest late Albian of north-eastern Spain is reported from the Middle Member of the Escucha Formation at the San Just site. Nine palynological samples yielded mainly monosulcates (Clavatipollenites, Dichastopollenites, Hammenia, Jusinghipollis, Liliacidites, Pennipollis including proposed new species P. escuchensis, Retimonocolpites, and Transitoripollis) and a few tricolpates (Phimopollenites, Rousea, Striatopollis, and Tricolpites). These assemblages, mainly composed of angiosperm pollen grains, suggest that significantly diversified flowering plants flourished both in brackish and freshwater swamp plain environments represented by the Escucha Formation in Albian times, although they were less diverse than angiosperms in the Late Cretaceous. The palynological assemblages share greatest similarities with those of other southern Laurasian localities, although there are some taxa more typical of palynofloras of northern Gondwana.     

Age determination of the Arcillas de Morella Formation (Maestrazgo Basin,Spain)

New palynological analysis of the Arcillas de Morella Formation provides data for determinations of age of the Lower Cretaceous strata in the Ermita Sant Antoni de la Vespa section located in the district of Els Ports in the Morella sub-basin of Castellón province, north-eastern Spain. Controversy still exists over the age of this formation, which is imprecisely dated as either Barremian or Aptian in age. Detailed reconnaissance of palynological content (dinocyst, pollen and spore assemblages) together with ammonoid data permits a more accurate biostratigraphic assessment of this deposit. The presence of Subtilisphaera terrula, Florentinia mantelli and Oligosphaeridium abaculum indicates a Barremian age at the base of the formation. The presence of Stellatopollis at the top of this formation possibly indicates that the deposit may be as old as latest Barremian. Furthermore, a recent study of ammonoids situated the Barremian-Aptian boundary within the overlying Cap de Vinyet Member of the Forcall Formation in the Morella sub-basin. This study together with the palynological assemblage from the Arcillas de Morella Formation indicates a Barremian age for this deposit.     

New reconstruction of Weichselia reticulata (Stokes et Webb) Fontaine in Ward emend. Alvin, 1971 based on fertile remains from the middle Albian of Spain

Exceptionally well-preserved specimens from the middle Albian of Spain corresponding to a nearly complete fertile frond and fragments of pinnae containing soral clusters of the tree fern Weichselia reticulata have provided new data about the structure and arrangement of pinnae and their associated fertile reproductive structure. This new material has been compared with the previous studies, and recostructions of this fern and the new data indicate the segregation of vegetative and fertile fronds within the main stipe of this fern.     

Palaeobotanical remains associated with dinosaur fossils from the Camarillas Formation (Barremian) of Galve (Teruel,Spain)

A well-preserved macroflora and rich palynological assemblages corresponding to the Camarillas Formation (early-middle Barremian) in the San Cristóbal and Galve Mine sites from the Galve sub-basin in northeastern Spain are presented here. These remains represent the first fossil plant evidence from these deposits. Within plant macroremains, the cheirolepidiacean Pseudofrenelopsis aff. varians (Fontaine) Watson has been found. The palynological assemblage yielded well-preserved spores and pollen grains, mainly dominated by the genus Classopollis. Spores are also abundantly represented by schizaeacean spores (Cicatricosisporites and Plicatella). This spore assemblage supports an early-middle Barremian age for these localities. It is noteworthy that small basal angiosperm pollen grains of the genera Crassipollis and Retimonocolpites, together with other indeterminate grains, have been reported here. This flora constitutes the primary food producer for dinosaur at that time, and thus the information of the flora is important for the understanding of the ecological background for the dinosaur evolution during the Early Cretaceous.     

Can the world afford to ignore biotechnology solutions that address food insecurity?

Genetically engineered (GE) crops can be used as part of a combined strategy to address food insecurity, which is defined as a lack of sustainable access to safe and nutritious food. In this article, we discuss the causes and consequences of food insecurity in the developing world, and the indirect economic impact on industrialized countries. We dissect the healthcare costs and lost productivity caused by food insecurity, and evaluate the relative merits of different intervention programs including supplementation, fortification and the deployment of GE crops with higher yields and enhanced nutritional properties. We provide clear evidence for the numerous potential benefits of GE crops, particularly for small-scale and subsistence farmers. GE crops with enhanced yields and nutritional properties constitute a vital component of any comprehensive strategy to tackle poverty, hunger and malnutrition in developing countries and thus reduce the global negative economic effects of food insecurity.     

The contribution of transgenic plants to better health through improved nutrition: opportunities and constraints

Malnutrition is a prevalent and entrenched global socioeconomic challenge that reflects the combined impact of poverty, poor access to food, inefficient food distribution infrastructure, and an over-reliance on subsistence mono-agriculture. The dependence on staple cereals lacking many essential nutrients means that malnutrition is endemic in developing countries. Most individuals lack diverse diets and are therefore exposed to nutrient deficiencies. Plant biotechnology could play a major role in combating malnutrition through the engineering of nutritionally enhanced crops. In this article, we discuss different approaches that can enhance the nutritional content of staple crops by genetic engineering (GE) as well as the functionality and safety assessments required before nutritionally enhanced GE crops can be deployed in the field. We also consider major constraints that hinder the adoption of GE technology at different levels and suggest policies that could be adopted to accelerate the deployment of nutritionally enhanced GE crops within a multicomponent strategy to combat malnutrition.     

Paleoenvironmental reconstruction of an Albian plant community from the Ariño bonebed layer (Iberian Chain,NE Spain)

The AR-1 layer, corresponding to the Escucha Formation (Lower Cretaceous) in the Santa Maria Mine of Ariño, has supplied rich and well-preserved macrofloral and palynological assemblages showing interesting data about both taphonomic and environmental conditions. This single layer is located in the Oliete Sub-Basin from the Maestrazgo Basin in northeastern Spain, and it represents one of the most outstanding single layer fossil sites in the world. This site shows abundant and diverse fauna containing exquisitely preserved vertebrate and invertebrate fossils (dinosaur bones, turtles, crocodiles, fishes, molluscs and ostracods) and also plant remains of Albian age. The assemblage is especially significant for dinosaur phylogenetic analysis. The sedimentary environment corresponds to a freshwater swamp plain with sporadic marine inputs within a deltaic–estuarine system under subtropical–tropical climate.     

Singular taphonomic record of a wildfire event from middle Albian deposits of Escucha Formation in northeastern of Spain

A fossil plant assemblage composed of a great amount of macro, meso and microscopical charcoalifed remains occur in a single layer in Albian deposits of the Escucha Formation in northeastern Spain. This assemblage consists fundamentally of fragments of pinnae and pinnules corresponding to the Matoniaceous ferns Weichselia reticulata and Phlebopteris dunkeri also with some gymnosperm wood remains. The features of both the fossil plants and the deposit itself indicate accurate paleoenvironmental conditions related to the action of wildfires over the vegetation growing in freshwater swamp plains during Albian in Southwestern Eurasia.