Short-term patterns in water and nitrogen acquisition by two desert shrubs following a simulated summer rain

A field experiment was conducted at the Jornada Long-Term Ecological Research (LTER) site in the Chihuahuan Desert of New Mexico to compare the rapidity with which the shrubs Larrea tridentata and Prosopis glandulosa utilized water, CO² and nitrogen (N) following a simulated summer rainfall event. Selected plants growing in a roughly 50-m² area were assigned to treatment and control groups. Treatment plants received the equivalent of 3 cm of rain, while no supplemental water was added to the control plants. Xylem water potential (_x) and net assimilation rate (A_net) were evaluated one day before and one and three days after watering. To monitor short-term N uptake, soils around each plant were labeled with eight equally distant patches of enriched ¹⁵N before watering. Each tracer patch contained 20 ml of 20 mM ¹⁵ NH₄ ¹⁵NO³ (99 atom%) solution applied to the soil at 20 cm from the center of the plant at soil depths of 10 and 20 cm. Nitrogen uptake, measured as leaf ¹⁵N, was evaluated at smaller time intervals and for a longer period than those used for _x and A^net. Both A^net and ^x exhibited a significant recovery in watered vs. control Larrea plants within 3 days after the imposition of treatment, but no such recovery was observed in Prosopis in that period. Larrea also exhibited a greater capacity for N uptake following the rain. Leaf ¹⁵N was five-fold greater in watered compared to unwatered Larrea plants within 2 days after watering, while foliar ¹⁵N was not significantly different between the watered and unwatered Prosopis plants during the same period. Lack of a significant change in root ¹⁵ NO^{– 3} uptake kinetics of Larrea, even three days after watering, indicated that the response of Larrea to a wetting pulse may have been due to a greater capacity to produce new roots. The differential ability of these potential competitors in rapidly acquiring pulses of improved soil resources following individual summer rainfall events may have significant implications for the dynamic nature of resource use in desert ecosystems.     

Dependence of plastoquinol diffusion on the shape, size, and density of integral thylakoid proteins

The diffusion of plastoquinol in the chloroplast thylakoid membrane is modelled using Monte Carlo techniques. The integral proteins are seen as obstacles to diffusion, and features of percolation theory emerge. Thus, the diffusion coefficient diminishes with increasing distance and there is a critical threshold of protein concentration, above which the long-range diffusion coefficient is zero. The area occupied by proteins in vivo is assessed and appears to be around this threshold, as determined from calculations assuming randomly distributed noninteracting proteins. Slight changes in the protein arrangement lead to pronounced changes in diffusion behaviour under such conditions. Mobility of the proteins increases the protein occupancy threshold, while boundary lipids impermeable to PQ diffusion decrease it. Further, the obstruction of plastoquinone/plastoquinol binding sites in a random arrangement is evaluated.     

Adjusting for Ordinal Covariates by Inducing a Partial Ordering

In the context of randomized clinical trials, multiplicity arises in many forms. One prominent example is when a key endpoint is measured and analyzed both at baseline and after treatment. It is common to analyze each separately, but more efficient to adjust the post‐treatment comparisons for the baseline values. Adjustment techniques generally treat the covariate (baseline value, in this case) as either nominal or continuous. Either is problematic when applied to an ordinal covariate, the former because it fails to exploit the natural ordering and the latter because it relies on an artifical notion of linear prediction and differences between values. We propose new methods for adjusting for ordinal covariates without having to treat them as nominal or continuous. Specifically, the information‐preserving composite endpoint consists of the pair of values for each patient, one at baseline and one after treatment. Some of these patterns will indicate more improvement than others, yet some pairs of patterns are not comparable. Hence, the ordering is only partial. We develop an approach to testing and deriving estimators of magnitudes of the treatment effect based on comparing each observation in one group to each observation in the other group to which it is comparable. (© 2004 WILEY‐VCH Verlag GmbH & Co. KGaA, Weinheim)     

Neurospora crassa FKBP22 is a novel ER chaperone and functionally cooperates with BiP

FK506 binding proteins (FKBPs) belong to the family of peptidyl prolyl cis-trans isomerases (PPIases) catalyzing the cis/trans isomerisation of Xaa-Pro bonds in oligopeptides and proteins. FKBPs are involved in folding, assembly and trafficking of proteins. However, only limited knowledge is available about the roles of FKBPs in the endoplasmic reticulum (ER) and their interaction with other proteins. Here we show the ER located Neurospora crassa FKBP22 to be a dimeric protein with PPIase and a novel chaperone activity. While the homodimerization of FKBP22 is mediated by its carboxy-terminal domain, the amino-terminal domain is a functional FKBP domain. The chaperone activity is mediated by the FKBP domain but is exhibited only by the full-length protein. We further demonstrate a direct interaction between FKBP22 and BiP, the major Hsp70 chaperone in the ER. The binding to BiP is mediated by the FKBP domain of FKBP22. Interestingly BiP enhances the chaperone activity of FKBP22. Both proteins form a stable complex with an unfolded substrate protein and thereby prevent its aggregation. These results suggest that BiP and FKBP22 form a folding helper complex with a high chaperoning capacity in the ER of Neurospora crassa.     

Nuclear localization and DNA binding of ecdysone receptor and ultraspiracle

The Ecdysone receptor (EcR) is distributed between cytoplasm and nucleus in CHO cells. Nuclear localization is increased by the ligand Muristerone A. The most important heterodimerization partner Ultraspiracle (Usp) is localized predominantly in the nucleus. We used the diethylentriamine nitric oxide adduct DETA/NO, which releases NO and destroys the zinc-finger structure of nuclear receptors, to investigate whether nuclear EcR and Usp interact with DNA. If expressed separately, Usp and EcR in the absence of hormone do not interact with DNA. The hormone-induced increase in nuclear EcR is due to enhanced DNA binding. In the presence of Usp, EcR is shifted nearly quantitatively into the nucleus. Only a fraction (approximately 30%) of the heterodimer is sensitive to DETA/NO. Interaction of the heterodimer with DNA is mediated mainly by the C-domain of EcR. Deletion of the DNA-binding domain of Usp only slightly reduces nuclear localization of EcR/Usp, although the nuclear localization signal of Usp is not present anymore. The results indicate that EcR and Usp can enter the nucleus independently, but cotransport of both receptors mediated by dimerization via the ligand binding domains is possible even in the absence of hormone.     

Structure-function relationship studies of PTH(1-11) analogues containing sterically hindered dipeptide mimetics.

The N-terminal 1-34 fragment of parathyroid hormone (PTH) is fully active in vitro and in vivo and reproduces all biological responses characteristic of the native intact PTH. In order to develop safer and non-parenteral PTH-like bone anabolic agents, we have studied the effect of introducing conformationally constrained dipeptide mimetics into the N-terminal portion of PTH in an effort to generate miniaturized PTH-mimetics. To this end, we have synthesized and conformationally and biologically characterized PTH(1-11) analogues containing 3R-carboxy-6S-amino-7,5-bicyclic thiazolidinlactam (7,5-bTL), a rigidified dipeptide mimetic unit. The wild type sequence of PTH(1-11) is H-Ser-Val-Ser-Glu-Ile-Gln-Leu-Met-His-Asn-Leu-NH(2). The following pseudo-undecapeptides were prepared: [Ala(1), 7,5-bTL(3, 4), Nle(8), Arg(11)]hPTH(1-11)NH(2) (I); [Ala(1), 7,5-bTL(6, 7), Nle(8), Arg(11)]hPTH(1-11)NH(2) (II); [Ala(1), Nle(8), 7,5-bTL(9, 10), Arg(11)]hPTH(1-11)NH(2) (III). In aqueous solution containing 20% TFE, only analogue I exhibited the typical CD pattern of the alpha-helical conformation. NMR experiments and molecular dynamics calculations located the alpha-helical stretch in the sequence Ile(5)-His(9). The dipeptide mimetic unit 7,5-bTL induces a type III beta-turn, occupying the positions i - 1 and i of the turn. Analogue II exhibited an equilibrium between a type I beta-turn and an alpha-helix, and analogue III did not show any ordered structure. Biological tests revealed poor activity for all analogues (EC(50) > 0.1 mM). Apparently, the relative side-chain orientation of Val(2), Ile(5) and Met(8) can be critical for effective analogue-receptor interaction. Considering helicity as an essential property to obtain active PTH agonists, one must decorate the correctly positioned dipeptide mimetic azabicycloalkane scaffold with substitutions corresponding to the displaced amino acids.     

Macromolecular crowding and its influence on possible reaction mechanisms in photosynthetic electron flow

The diffusion of plastoquinol and its binding to the Qo site of the cyt bf complex in the course of photosynthetic electron transport was studied by following the sigmoidal flash-induced re-reduction kinetics of P700 after previous oxidation of the intersystem electron carriers. The data resulting from these experiments were matched with a simulation of electron transport using Monte Carlo techniques. The simulation was able to account for the experimental observations. Two different extreme cases of reaction mechanism at the Qo site were compared: a diffusion limited collisional mechanism and a non-diffusion limited tight binding mechanism. Assuming a tight binding mechanism led to best matches due to the high protein density in thylakoids. The varied parameters resulted in values well within the range of published data. The results emphasise the importance of structural characteristics of thylakoids in models of electron transport.     

Mapping vascular response to in vivo Hemodynamics: application to increased flow at the basilar terminus

Hemodynamic forces play critical roles in vascular pathologies such as atherosclerosis, aneurysms, and stenosis. However, detailed relationships between the specific in vivo hemodynamic microenvironment and vascular responses leading to the triggering or exacerbation of pathological remodeling of the vessel remain elusive. We have developed a hemodynamics-biology co-mapping technique that enables in situ correlation between the in vivo blood flow field and vascular changes secondary to hemodynamic insult. The hemodynamics profile is obtained from computational fluid dynamics simulation within the vascular geometry reconstructed from three-dimensional in vivo images, whereas the vascular response is obtained from histology or immunohistochemistry on harvested vascular tissue. The hemodynamics field is virtually sectioned in the histological slicing planes and digitally co-mapped with the histological images, thereby enabling correlation of the specific local vascular responses with the inciting hemodynamic stresses. We demonstrate application of this technique to rabbit basilar terminus subjected to elevated flow. Morphological changes at the basilar terminus 5 days after the flow increase were co-mapped with the initial wall shear stress and wall shear stress gradient distributions, from which localization of destructive remodeling in a specific hemodynamic zone was noticed. This method paves the way for further investigations to determine the connection between in vivo mechanical stimuli and biological responses, such as initiation of aneurysmal remodeling.     

COMPETITIVE SUBORDINATION OF A PIEDMONT OLD FIELD SUCCESSIONAL DOMINANT BY AN INTRODUCED SPECIES

Heterotheca latifolia Buckley has been replacing Erigeron canadensis L. as the first year dominant in Carolina-Georgia piedmont old field succession. This species of Heterotheca was introduced to this area in the 1940's. Both the Heterotheca and Erigeron species are winter annuals. We used a replacement series experiment to detect competition (interference) under a variety of greenhouse environments to seek a possible explanation for the observed changes in old field succession. Interspecific competition between Heterotheca and Erigeron plants resulted in significant reductions in the dry weight of Erigeron plants. Erigeron wilted before Heterotheca in 98.2% of observations of first-wilting in mixed-species cultures. At flowering, Erigeron plants in mixed-species cultures were shorter than Heterotheca plants. Poor seed dispersal in mixed-species communities in the field could limit Erigeron's ability to populate new areas. Greenhouse flats densely sown with equal numbers of seeds of both species resulted in a winter rosette cover of Heterotheca only. Heterotheca's assumption of the role of first year dominant in old field succession may be due to interspecific competition with Erigeron at all stages in its life cycle. These competitive effects can be observed under a variety of environmental conditions, especially those in which drought occurs.     

Effect of CO2 on the growth of a bleached Euglena

The addition of CO₂ in gaseous form to the growth medium of Euglena gracilis var bacillaris (streptomycin bleached) results in a marked increase in the peak populations reached by the organism. when 20 mm succinate is used as the carbon source, the increase in peak population is proportional to the percentage CO₂ enrichment of an air wash up to at least 10% CO₂. when acetate is used as a carbon source for growth, some increase is seen in the peak population reached by euglena but the increase is not dependent upon the percentage enrichment of CO₂ between 2 and 10% CO₂. this extended growth is dependent up the presence of gaseous CO₂; bicarbonate ion actually inhibiting growth. thiamin is not required for the CO₂ effect, in fact no thiamin requirement can be demonstrated for this organism under the conditions of this experiment.