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1.
A genetic linkage map of microsatellite,gene-specific and morphological markers in diploid <Emphasis Type="Italic">Fragaria</Emphasis> 总被引:6,自引:0,他引:6
Sargent DJ Davis TM Tobutt KR Wilkinson MJ Battey NH Simpson DW 《TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik》2004,109(7):1385-1391
Knowledge of the genetic diversity of a species is important for the choice of crossing parents in line and hybrid breeding. Our objective was to investigate European winter triticale using simple sequence repeat (SSR) markers and the coancestry coefficient (f) with regard to genetic diversity and grouping of germplasm. Three to five primer pairs for each of the 42 chromosomes were selected to analyse 128 European winter triticale varieties and breeding lines. SSR analysis resulted in the identification of 657 alleles with an average of 6.8 alleles per primer pair. The average polymorphism information content (PIC) for polymorphic markers was 0.54. Correlation between f and genetic similarity (GS) estimates based on Rogers Distance was low (rf×GS(ABDR)=0.33). The analysis of molecular variance (AMOVA) revealed that 84.7% of the total variation was found within breeding companies, and 15.3% among them. In conclusion, SSR markers from wheat and rye provide a powerful tool for assessing genetic diversity in triticale. Even though no distinct groups within the European winter triticale pool could be detected by principal co-ordinate analysis, this study provides basic information about the genetic relationships for breeding purposes.Electronic Supplementary Material Supplementary material is available in the online version of this article at Communicated by H.C. Becker 相似文献
2.
SUMMARY: Polylink runs under Microsoft Windows (95 or later). It performs various calculations that are useful for investigating two-point linkage analysis for autopolyploids, based on the random chromosome pairing model. These include calculation of offspring phenotypic probabilities as functions of the recombination fraction, calculation of theoretical standard errors for the maximum likelihood estimator of and numerical computation of maximum likelihood estimates. It also includes simulation facilities. AVAILABILITY: Polylink is free and available from Xiangming Xu via email 相似文献
3.
Recently, an S haplotype-specific F-box (SFB) gene has been proposed as a candidate for the pollen-S specificity gene of RNase-mediated gametophytic self-incompatibility in Prunus (Rosaceae). We have examined two pollen-part mutant haplotypes of sweet cherry (Prunus avium). Both were found to retain the S-RNase, which determines stylar specificity, but one (S3' in JI 2434) has a deletion including the haplotype-specific SFB gene, and the other (S4' in JI 2420) has a frame-shift mutation of the haplotype-specific SFB gene, causing amino acid substitutions and premature termination of the protein. The loss or significant alteration of this highly polymorphic gene and the concomitant loss of pollen self-incompatibility function provides compelling evidence that the SFB gene encodes the pollen specificity component of self-incompatibility in Prunus. These loss-of-function mutations are inconsistent with SFB being the inactivator of non-self S-RNases and indicate the presence of a general inactivation mechanism, with SFB conferring specificity by protecting self S-RNases from inactivation. 相似文献
4.
It is known that a single-locus gametophytic self-incompatibility (GSI) system can persist with just two distinct alleles in an autotetraploid population, in contrast to diploid GSI systems, assuming "competitive interaction" in which heteroallelic pollen is universally compatible. The steady-state population structure of a GSI system in autotetraploids was investigated in an undivided population assuming "competitive interaction." A deterministic model was developed to predict the frequencies of genotypes with two, three, or four distinct S alleles, assuming no mutation or population subdivision. The model showed that unlike in diploid GSI systems, the limiting values of the frequencies of genotype classes do not minimize pollen wastage. 相似文献
5.
Seven polymorphic microsatellites were developed in olive. Six of them came from a genomic library enriched for GA and CA repeat sequences. They showed single locus polymorphism in a set of 23 olive cultivars (from six to nine alleles per locus). Three different pairs of loci were sufficient to discriminate all cultivars. The other polymorphic primer pair was designed from a published sequence for olive lupeol sgutase and revealed just two alleles. The seven primer pairs were tested on two accessions of five other species of the Oleaceae and three, EMO2, EMO13 and EMO90, revealed polymorphism in two, four and three species, respectively. 相似文献
6.
Daniel J Sargent Felicidad Fernández-Fernández Alicja Rys Victoria H Knight David W Simpson Kenneth R Tobutt 《BMC plant biology》2007,7(1):15
Background
Raspberry breeding programmes worldwide aim to produce improved cultivars to satisfy market demands and within these programmes there are many targets, including increased fruit quality, yield and season, and improved pest and disease resistance and plant habit. The large raspberry aphid, Amphorophora idaei, transmits four viruses and vector resistance is an objective in raspberry breeding. The development of molecular tools that discriminate between aphid resistance genes from different sources will allow the pyramiding of such genes and the development of raspberry varieties with superior pest resistance. We have raised a red raspberry (Rubus idaeus) F1 progeny from the cross 'Malling Jewel' × 'Malling Orion' (MJ × MO), which segregates for resistance to biotype 1 of the aphid Amphorophora idaei and for a second phenotypic trait, dwarf habit. These traits are controlled by single genes, denoted (A 1) and (dw) respectively. 相似文献7.
This study reports the development and characterization of 10 polymorphic microsatellite primer pairs in wild strawberry (Fragaria vesca). The primers were designed from a genomic library enriched for di‐, tri‐ and tetranucleotide repeats from F. vesca‘Reugen’. They showed single locus polymorphism in a set of nine F. vesca accessions; two to six alleles were detected per locus. The level of polymorphism in F. vesca was surprisingly low, although three pairs of primers were sufficient to distinguish between most accessions. 相似文献
8.
J. B. Clarke D. J. Sargent R. I. Bošković A. Belaj K. R. Tobutt 《Tree Genetics & Genomes》2009,5(1):41-51
One hundred and sixty microsatellite (simple sequence repeat (SSR)) and six gene-specific markers revealing 174 loci were
scored in 94 seedlings from the inter-specific cross of Prunus avium ‘Napoleon’ × Prunus nipponica accession F1292. The co-segregation data from these markers were used to construct a linkage map for cherry which spanned
680 cM over eight linkage groups with an average marker spacing of 3.9 cM per marker and just six gaps longer than 15 cM.
Markers previously mapped in Prunus dulcis ‘Texas’ × Prunus persica ‘Earlygold’ allowed the cherry map to be anchored to the peach × almond map and showed the high level of synteny between
the species. Eighty-four loci segregated in P. avium ‘Napoleon’ versus 159 in P. nipponica. The segregations of 32 isoenzyme loci in a subset of 47 seedlings from the progeny were scored, using polyacrylamide gel
electrophoresis and/or isoelectric focusing separation followed by activity staining, and the co-segregation data were analysed
along with those for 39 isoenzymes reported previously and for the 174 sequence-tagged site loci plus an additional two SSR
loci. The second map incorporates 233 loci and spans 736 cM over eight linkage groups with an average marker spacing of 3.2 cM
per marker and just two gaps greater than 15 cM. The microsatellite map will provide a useful tool for cherry breeding and
marker-assisted selection and for synteny studies within Prunus; the gene-specific markers and isoenzymes will be useful for comparisons with maps of other rosaceous fruit crops.
Electronic supplementary material The online version of this article (doi:) contains supplementary material, which is available to authorized users. 相似文献
9.
The aim was to produce a tetraploid form of Buddleia globosa to facilitate introgression of yellow flower colour into B. davidii, which is naturally tetraploid. Protocols were established for the micropropagation of B. globosa and tetraploid plants were obtained by application in vitro of colchicine to pre-cultured excised nodal sections. Three concentrations of colchicine were applied (0.01%, 0.05% and 0.1%
w/v) for 1, 2 or 3 days. At 0.01% tetraploids were produced only after 2 days of application. All other treatments produced
at least one tetraploid. The colchicine technique was extremely effective: of 29 lines tested, 19 were tetraploid and 5 were
mixoploid. The vegetative characteristics of these tetraploids are described and the flowering characteristics of the three
that flowered.
This revised version was published online in August 2006 with corrections to the Cover Date. 相似文献
10.
R. Bosković K. R. Tobutt H. Duval I. Batlle F. Dicenta F. J. Vargas 《TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik》1999,99(5):800-810
Six almond progenies, each the product of a cross between a self-compatible and a self-incompatible parent, were analysed
for stylar ribonucleases. Proteins were extracted and separated using non-equilibrium pH gradient electrofocusing (NEPHGE),
and the gels were stained for ribonuclease activity. Most seedlings showed either two principal bands, interpreted as corresponding
to two incompatibility alleles, or a single band. The seedlings were also bagged in the field at flowering time to determine
fruit set after selfing, and some were also examined for the growth of pollen-tubes in selfed styles using UV fluorescence
microscopy. With very few exceptions, those seedlings showing single-banded zymograms were found to be self-compatible according
to field and microscope studies, and those with two bands were found to be self-incompatible. We conclude that the allele
for self-compatibility in almond does not code for ribonuclease activity and that the ribonuclease isoenzyme assay is a convenient
technique for predicting self-compatibility in segregating progenies. A novel band in two derivatives of ’Ferrastar’ was ascribed
to a new incompatibility allele, S
10
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Received: 19 January 1999 / Accepted: 30 January 1999 相似文献