Microsatellite markers for the common bean Phaseolus vulgaris

Efforts to develop molecular tools for genetic analysis and breeding of common bean in the tropics are still limited. The number of microsatellite markers available for the crop is small compared to other crops of similar social and economic importance. As part of a project to broaden the use of molecular tools in bean breeding, a genomic library enriched for AG/TC repeat sequences was constructed for Phaseolus vulgaris. Twenty microsatellite markers were initially developed and 10 were characterized using a panel of 85 representative accessions of the bean gene bank. The number of alleles per marker ranged from three to 10. The polymorphism information content (PIC) varied from 0.23 to 0.80. The results indicate that the new markers can be readily used in genetically analysis of common bean.     

Infrasectional systematics of the genus Sideritis L. section Sideritis (Lamiaceae)

RIVERA NUÑEZ, D., OBON DE CASTRO, C., TOMAS-LORENTE, F., FERRERES, F. & TOMAS-BARBERAN, F. A., 1990. Infrasectional systematics of the genus Sideritis L. section Sideritis (Lamiaceae). A new taxonomic division of the section Sideritis is proposed on the basis of morphological, cytological and chemical characters. The following subsections art-recognized: Grandiflora, Ovata, Camarae, Linearifolia, Gymnocarpae, Stachydioides, Lacaitae, Hirsuta, Chamaedryfolia, Arborescens, Flavovirens, Leucantha, Angustifolia, Serrata and Scordioides . Possible evolutionary pathways are discussed.     

Fractionation by centrifugation of leaf proteins from varieties and cultivars of Helianthus annuus and Helianthus debilis as a function of pH and temperature

In order to select plant material for obtaining a high proportion of chlorophyll-free protein from Helianthus species by heat fractionation, leaf extracts from 11 field grown cultivars of H. annuus and H. debilis were investigated. In addition, press juices from H. annuus cv. Kinesisk were supplied with salts or urea before heat treatment in order to increase the proportion of chlorophyll-free protein during heat fractionation. The extracts were adjusted to pH 5.0, 6.0 and 8.0; then left for 20 min at 20°C, 50°C or 60°C and centrifuged at 2,500 g. The highest percentage chlorophyll-free protein of the total protein in the extract, more than 10%, was obtained for H. debilis cv. fl.pl. Sun Gold, H. annuus cv. Giganta, H. annuus cv. uniflorus and H. debilis cv. Stella, at pH 6.0 and 50°C. The low percentage chlorophyll-free protein obtained could be explained by the fact that a considerable part of the chlorophyll-free protein sedimented at original pH, low temperature and low centrifugation speed. This sedimentation at low temperature was probably due to interactions of phenolics. Besides, if the chlorophyll-associated membranes were highly fragmented during the disintegration of the plant material, the high temperature required to precipitate them completely led to further aggregation and thus to loss of chlorophyll-free proteins. Salts or urea present during heat treatment (pH 6.0/55°C for 20 min) did not considerably increase the proportion of chlorophyll-free proteins obtained.     

Fractionation by centrifugation of leaf proteins from Brassica napus, Brassica oleracea, Helianthus annuus and Atriplex hortensis as a function of pH and temperature

Chlorophyll-free leaf protein concentrates for human consumption can be produced after separation of the chlorophyll-associated protein from the rest of the leaf protein. This protein separation was studied in four plant species using heat fractiona-tion. Press juice was prepared on a laboratory scale from field grown Atriplex hortensis, Brassica napus. Brassica oleracea and Helianthus annuus. Some further experiments were made with greenhouse grown plant material. After adjustment of pH to values between 4.0 and 8.0 the press juice was heated in water baths at 20, 35, 40, 45, 50, 55 and 60°C with or without 20 min holding time at appropriate temperature. Thereafter the juices were briefly centrifuged at 2500g. The protein content of the sediment was determined and the colour of the supernatant was observed. The species showed different protein sedimentation patterns, especially at neutral and weakly alkaline pH. Brassica napus had rapidly sedimenting proteins, low temperature was sufficient for complete sedimentation of chlorophyll-associated proteins and gave a high percentage of the total press juice protein as chlorophyll-free protein. Atriplex hortensis had slowly sedimenting proteins irrespective of temperature, required high temperature for complete sedimentation of chlorophyll-associated proteins and gave a low percentage chlorophyll-free proteins. Brassica oleracea and Helianthus annuus showed intermediated properties. Reasons for these differences among the species are discussed.     

Analysis of genetic variability of South American wild rice populations (Oryza glumaepatula) with isozymes and RAPD markers

The knowledge of population structure and genetic diversity of wild relatives of rice is needed to investigate their evolutionary history and potential use in breeding programs. Very little is known about the wild rice species ( Oryza spp.), particularly those that are native to South America. A study using isozyme and RAPD markers was conducted to estimate the level of genetic diversity of four South American wild rice populations ( Oryza glumaepatula ) recently collected in the Amazon forest and western Brazil rivers. F -statistics and genetic diversity parameters calculated from isozyme and RAPD markers indicated high values for inbreeding coefficients and differentiation among the four populations. In agreement with this, a pattern of greater variation between than within populations was observed with both types of markers. These findings were corroborated by an AMOVA analysis, which indicated that a large portion of the total genetic variation was attributed to regional divergence. The partition of the AMOVA analysis among populations showed that most of the genetic diversity was due to differences among populations. This distribution pattern of genetic variation of O. glumaepatula populations is in agreement with the expectation for an autogamous species and provides important baseline data for conservation and collection strategies for this species.     

Co‐limitation of photosynthetic capacity by nitrogen and phosphorus in West Africa woodlands

Photosynthetic leaf traits were determined for savanna and forest ecosystems in West Africa, spanning a large range in precipitation. Standardized major axis fits revealed important differences between our data and reported global relationships. Especially for sites in the drier areas, plants showed higher photosynthetic rates for a given N or P when compared with relationships from the global data set. The best multiple regression for the pooled data set estimated V_cmax and J_max from N_DW and S. However, the best regression for different vegetation types varied, suggesting that the scaling of photosynthesis with leaf traits changed with vegetation types. A new model is presented representing independent constraints by N and P on photosynthesis, which can be evaluated with or without interactions with S. It assumes that limitation of photosynthesis will result from the least abundant nutrient, thereby being less sensitive to the allocation of the non‐limiting nutrient to non‐photosynthetic pools. The model predicts an optimum proportionality for N and P, which is distinct for V_cmax and J_max and inversely proportional to S. Initial tests showed the model to predict V_cmax and J_max successfully for other tropical forests characterized by a range of different foliar N and P concentrations.     

Synergistic effects of water temperature and dissolved nutrients on litter decomposition and associated fungi

In woodland streams, the decomposition of allochthonous organic matter constitutes a fundamental ecosystem process, where aquatic hyphomycetes play a pivotal role. It is therefore greatly affected by water temperature and nutrient concentrations. The individual effects of these factors on the decomposition of litter have been studied previously. However, in the climate warming scenario predicted for this century, water temperature and nutrient concentrations are expected to increase simultaneously, and their combined effects on litter decomposition and associated biological activity remains unevaluated. In this study, we addressed the individual and combined effects of water temperature (three levels) and nutrient concentrations (two levels) on the decomposition of alder leaves and associated aquatic hyphomycetes in microcosms. Decomposition rates across treatments varied between 0.0041 day^?1 at 5 °C and low nutrient level and 0.0100 day^?1 at 15 °C and high nutrient level. The stimulation of biological variables at high nutrients and temperatures indicates that nutrient enrichment of streams might have a higher stimulatory effect on fungal performance and decomposition rates under a warming scenario than at present. The stimulation of fungal biomass and sporulation with increasing temperature at both nutrient levels shows that increases in water temperature might enhance fungal growth and reproduction in both oligotrophic and eutrophic streams. The stimulation of fungal respiration and litter decomposition with increasing temperature at high nutrients indicates that stimulation of carbon mineralization will probably occur at eutrophied streams, while oligotrophic conditions seem to be ‘protected’ from warming. All biological variables were stimulated when both factors increased, as a result of synergistic interactions between factors. Increased water temperature and nutrient level also affected the structure of aquatic hyphomycete assemblages. It is plausible that if water quality of presently eutrophied streams is improved, the potential stimulatory effects of future increases in water temperature on aquatic biota and processes might be mitigated.