Rapid evolution of coral proteins responsible for interaction with the environment

BACKGROUND: Corals worldwide are in decline due to climate change effects (e.g., rising seawater temperatures), pollution, and exploitation. The ability of corals to cope with these stressors in the long run depends on the evolvability of the underlying genetic networks and proteins, which remain largely unknown. A genome-wide scan for positively selected genes between related coral species can help to narrow down the search space considerably. METHODOLOGY/PRINCIPAL FINDINGS: We screened a set of 2,604 putative orthologs from EST-based sequence datasets of the coral species Acropora millepora and Acropora palmata to determine the fraction and identity of proteins that may experience adaptive evolution. 7% of the orthologs show elevated rates of evolution. Taxonomically-restricted (i.e. lineage-specific) genes show a positive selection signature more frequently than genes that are found across many animal phyla. The class of proteins that displayed elevated evolutionary rates was significantly enriched for proteins involved in immunity and defense, reproduction, and sensory perception. We also found elevated rates of evolution in several other functional groups such as management of membrane vesicles, transmembrane transport of ions and organic molecules, cell adhesion, and oxidative stress response. Proteins in these processes might be related to the endosymbiotic relationship corals maintain with dinoflagellates in the genus Symbiodinium. CONCLUSION/RELEVANCE: This study provides a birds-eye view of the processes potentially underlying coral adaptation, which will serve as a foundation for future work to elucidate the rates, patterns, and mechanisms of corals' evolutionary response to global climate change.     

The effects of prolonged “bleaching” on the tissue biomass and reproduction of the reef coral Montastrea annularis

Colonies of Montastrea annularis from Carysfort Reef, Florida, that remained bleached seven months after the 1987 Caribbean bleaching event were studied to determine the long term effects of bleaching on coral physiology. Two types of bleached colonies were found: colonies with low numbers of zooxanthellae with normal pigment content, and a colony with high densities of lowpigment zooxanthellae. In both types, the zooxanthellae had an abnormal distribution within polyp tissues: highest densities were observed in basal endoderm and in mesenteries where zooxanthellae are not normally found. Bleached corals had 30% less tissue carbon and 44% less tissue nitrogen biomass per skeletal surface area, but the same tissue C:N ratio as other colonies that either did not bleach (normal) or that bleached and regained their zooxanthellae (recovered). Bleached corals were not able to complete gametogenesis during the reproductive season following the bleaching, while recovered corals were able to follow a normal gametogenic cycle. It appears that bleached corals were able to survive the prolonged period without nutritional contribution from their zooxanthellae by consuming their own structural materials for maintenance, but then, did not have the resources necessary for reproduction. The recovered corals, on the other hand, must have regained their zooxanthellae soon after the bleaching event since neither their tissue biomass nor their ability to reproduce were impaired.     

The effect of prolonged “bleaching” on skeletal banding and stable isotopic composition in Montastrea annularis

X-radiography and carbon and oxygen stable isotope analysis have been used to examine the effects of prolonged bleaching on the growth rate and chemical composition of the skeleton of the massive reef coral, Montastrea annularis. The post-bleaching linear growth of one colony that remained bleached for 10 to 12 months following the 1987 Caribbean-wide bleaching event was only 37% of mean annual growth from pre-bleaching years, and was manifest as a loss of the following year's low density band. Two colonies that did not bleach (normal) and two that bleached and regained their coloration (recovered) had linear growth rates over the same period that were 81 to 98% of mean pre-bleaching annual growth. Linear growth by a third recovered coral was 66% of pre-bleaching growth. No sub-annual stress bands were associated with the bleaching. The skeleton of the bleached colony had carbon and oxygen isotopic compositions that were reduced in range and enriched (increased) in both ¹³C and ¹⁸O in the post-bleaching year. The skeletons of two of the nine colonies, one bleached and one recovered, had depleted (reduced) ¹⁸O values (-5.3 and -4.8%., respectively) during the bleaching episode that agree with the suggestion that positive temperature anomalies occurred during, and may have caused, the bleaching event. The range and values for all other normal and recovered corals, however, were not different between the post-bleaching year and previous years. Our data suggest that stress bands and isotopic analysis of coral skeletons may not always be reliable tools for examining the occurrence, cause or effects of certain discrete stress events that may interrupt skeletal growth.     

CO2 enrichment and reduced seawater pH had no effect on the embryonic development of Acropora palmata (Anthozoa,Scleractinia).

The effects of decreased pH, caused by carbon dioxide (CO₂) dissolution in seawater (known as ocean acidification (OA)), on the development of newly fertilized eggs of the Caribbean reef-building coral, Acropora palmata, was tested in three experiments conducted during the summers of 2008 and 2009 (two repeats). Three levels of CO₂ enrichment were used: present day conditions (400?µatm, pH 8.1) and two CO₂-enriched conditions (700?µatm, pH 7.9, and 1000?µatm, pH 7.7). No effects on the progression or timing of development, or embryo and larval size, were detected in any of the three experimental runs. The results show that the embryos and larvae of A. palmata are able to develop normally under seawater pH of at least 0.4 pH units lower than the present levels. Acropora palmata larvae do not usually begin to calcify after settlement, so this study only examined the non-calcifying part of the life cycle of this species. Most of the concern about the effects of OA on marine organisms centers on its effect on calcification. Negative effects of OA on the embryonic development of this species were not found and they may not manifest until the newly settled polyps begin to calcify.     

Examination of the Montastraea annularis Species Complex (Cnidaria: Scleractinia) Using ITS and COI Sequences

The Caribbean coral Montastraea annularis has recently been proposed to be a complex of at least three sibling species. To test the validity of this proposal, we sequenced the ITS region of the nuclear ribosomal RNA gene family (ITS-1, 5.8S, and ITS-2), and a portion of the mitochondrial DNA gene cytochrome c oxidase subunit I (COI) from the three proposed species (M. annularis, M. faveolata, and M. franksi) from Florida reefs. The ITS fragment was 665 nucleotides long and had 19 variable sites, of which 6 were parsimony-informative sites. None of these sites was fixed within the proposed species. The COI fragment was 658 nucleotides long with only two sites variable in one individual. Thus, under both the biological species concept and the phylogenetic species concept, the molecular evidence gathered in this study indicates the Montastraea annularis species complex to be a single evolutionary entity as opposed to three distinct species. The three proposed Montastraea species can interbreed, ruling out prezygotic barriers to gene flow (biological species concept), and the criterion of monophyly is not satisfied if hybridization is occurring among taxa (phylogenetic species concept). Received January 20, 1998; accepted September 30, 1998.     

Responses of coral gastrovascular cavity pH during light and dark incubations to reduced seawater pH suggest species-specific responses to the effects of ocean acidification on calcification

Coral polyps have a fluid-filled internal compartment, the gastrovascular cavity (GVC). Respiration and photosynthesis cause large daily excursions in GVC oxygen concentration (O₂) and pH, but few studies have examined how this correlates with calcification rates. We hypothesized that GVC chemistry can mediate and ameliorate the effects of decreasing seawater pH (pH_SW) on coral calcification. Microelectrodes were used to monitor O₂ and pH within the GVC of Montastraea cavernosa and Duncanopsammia axifuga (pH only) in both the light and the dark, and three pH_SW levels (8.2, 7.9, and 7.6). At pH_SW 8.2, GVC O₂ ranged from ca. 0 to over 400% saturation in the dark and light, respectively, with transitions from low to high (and vice versa) within minutes of turning the light on or off. For all three pH_SW treatments and both species, pH_GVC was always significantly above and below pH_SW in the light and dark, respectively. For M. cavernosa in the light, pH_GVC reached levels of pH 8.4–8.7 with no difference among pH_SW treatments tested; in the dark, pH_GVC dropped below pH_SW and even below pH 7.0 in some trials at pH_SW 7.6. For D. axifuga in both the light and the dark, pH_GVC decreased linearly as pH_SW decreased. Calcification rates were measured in the light concurrent with measurements of GVC O₂ and pH_GVC. For both species, calcification rates were similar at pH_SW 8.2 and 7.9 but were significantly lower at pH_SW 7.6. Thus, for both species, calcification was protected from seawater acidification by intrinsic coral physiology at pH_SW 7.9 but not 7.6. Calcification was not correlated with pH_GVC for M. cavernosa but was for D. axifuga. These results highlight the diverse responses of corals to changes in pH_SW, their varying abilities to control pH_GVC, and consequently their susceptibility to ocean acidification.

     

Myristoyl esters of lactose

Whereas lactose did not undergo a base-catalyzed transesterification with methyl esters of fatty acids, methyl beta-lactoside reacted under identical conditions to give mono- and di-myristates. This difference in behavior is explained in terms of the formation of an unreactive, internally chelated potassium-lactose complex. Supporting evidence for this hypothesis is the observed change in the anomeric equilibrium of lactose in the presence of potassium carbonate. The monomyristates of methyl beta-lactoside were assigned the structures of 3' and 6' derivatives, and it is concluded that the diesters are the 3',6', and 6,6' derivatives.     

Circadian clock gene expression in the coral Favia fragum over diel and lunar reproductive cycles

Natural light cycles synchronize behavioral and physiological cycles over varying time periods in both plants and animals. Many scleractinian corals exhibit diel cycles of polyp expansion and contraction entrained by diel sunlight patterns, and monthly cycles of spawning or planulation that correspond to lunar moonlight cycles. The molecular mechanisms for regulating such cycles are poorly understood. In this study, we identified four molecular clock genes (cry1, cry2, clock and cycle) in the scleractinian coral, Favia fragum, and investigated patterns of gene expression hypothesized to be involved in the corals' diel polyp behavior and lunar reproductive cycles. Using quantitative PCR, we measured fluctuations in expression of these clock genes over both diel and monthly spawning timeframes. Additionally, we assayed gene expression and polyp expansion-contraction behavior in experimental corals in normal light:dark (control) or constant dark treatments. Well-defined and reproducible diel patterns in cry1, cry2, and clock expression were observed in both field-collected and the experimental colonies maintained under control light:dark conditions, but no pattern was observed for cycle. Colonies in the control light:dark treatment also displayed diel rhythms of tentacle expansion and contraction. Experimental colonies in the constant dark treatment lost diel patterns in cry1, cry2, and clock expression and displayed a diminished and less synchronous pattern of tentacle expansion and contraction. We observed no pattern in cry1, cry2, clock, or cycle expression correlated with monthly spawning events suggesting these genes are not involved in the entrainment of reproductive cycles to lunar light cycles in F. fragum. Our results suggest a molecular clock mechanism, potentially similar to that in described in fruit flies, exists within F. fragum.