Effects of increased salinity on the diatom assemblage in Fonda Lake,Michigan

A salt storage facility has been located adjacent to Fonda Lake since 1953. In February 1981 a core was taken from the profundal sediments of the lake and analyzed to determine the effects of salt perturbation on the diatom community over a 32-year period. Diatom assemblages from different levels were compared using multivariate techniques including cluster analysis and principal component analysis. Shifts in diatom composition related to salinification were revealed most clearly by subdominant taxa. Five distinct groups of diatom taxa were found to correspond with 5 depth intervals. The diatom component of the lake up to 1960 included two groups of taxa which were alkaliphilous and chloride indifferent. A reduction in species diversity beginning in 1960 may indicate a salt effect. By 1968, when diversity reached a minimum, a variety of halophilic taxa (including Diatoma tenue, Navicula gregaria and Synedra fasciculata) attained their highest relative abundances. At the top of the core, diversity increased slightly and some halophilic taxa decreased in relative abundance, which suggests a possible decrease in salt loading to the lake.     

Flavones are inhibitors of HIV-1 proteinase.

Substituted gamma-chromones were found to weakly inhibit HIV-1 proteinase, an important enzyme in the replication and processing of the AIDS virus. Chromones bearing hydroxyl substituents and a phenolic group at the 2-position (flavones) were the most active compounds and structure-activity relationships for a limited series of flavone inhibitors are presented. Dixon plots are reported and a possible mechanism for flavone-induced inhibition is proposed. The results are also compared with those for some structurally related non-peptidic inhibitors of HIV-1 proteinase. Since some flavonoid compounds have already been shown to have antiviral activity against AIDS, the present observations of anti-HIV-1 proteinase activity may be particularly significant.     

POST-PLEISTOCENE DIATOM SUCCESSION IN DOUGLAS LAKE,MICHIGAN1,2

Analysis of fossil diatom assemblages recovered from a 12.2 m core reveals a series of distinct floristic associations. The associations present are correlated with sediment type and reflect successive stages in the development of the lake. A basal red clay sediment contains a planktonic association characteristic of large, proglacial lakes. At 10.0 m core depth, sediment type changes to fine sand containing a higher abundance of benthic species indicating reduction of water depth at the deposition site. Marl sediments begin at 9.7 m and contain an association characteristic of a small, shallow, oligotrophic lake. At 8.8 m the marl sequence is interrupted by highly organic sediment containing a eutrophic plankton association. From 8.5 to 7.6 m the sediment type grades from marl to organic, apparently reduced sediments and diatom associations present contain successively higher percentages of planktonic species associated with eutrophic habitats. By the 7.6 m level a eutrophic plankton association, similar to the modern flora, is established and remains remarkably constant to the surface of the section.     

QUANTITATIVE DIFFERENCES BETWEEN BENTHIC ALGAL COMMUNITIES ALONG A DEPTH GRADIENT IN LAKE MICHIGAN1,2

This study analyzes the impact of conditions associated with depth upon benthic algal communities in Lake Michigan. Diatom abundance was greater at 9.1 and 14.6 m depths than 6.5, 22.6 and 27.4 m. Shallow (6.5 m), mid-depth (9.1 and 14.6 m) and deep (22.6 and 27.4 m) zones were distinguishable on the basis of community composition, structure and abundance. Dominance of benthic species, high diversity and low abundance in shallow communities probably resulted from substantial substrate disturbance by wave action in this productive zone. Dominance of benthic species, high diversity and high abundance characterized mid-depth communities where less wave disturbance enabled algal accumulation. Preponderance of living planktonic taxa, low diversity and low abundance delineated deep communities where planktonic algae accumulated and low light levels reduced growth of benthic species.     

Identification and characterization of bi-thiazole-2,2′-diamines as kinase inhibitory scaffolds

Based on bioinformatics interrogation of the genome, > 500 mammalian protein kinases can be clustered within seven different groups. Of these kinases, the mitogen-activated protein kinase (MAPK) family forms part of the CMGC group of serine/threonine kinases that includes extracellular signal regulated kinases (ERKs), cJun N-terminal kinases (JNKs), and p38 MAPKs. With the JNKs considered attractive targets in the treatment of pathologies including diabetes and stroke, efforts have been directed to the discovery of new JNK inhibitory molecules that can be further developed as new therapeutics. Capitalizing on our biochemical understanding of JNK, we performed in silico screens of commercially available chemical databases to identify JNK1-interacting compounds and tested their in vitro JNK inhibitory activity. With in vitro and cell culture studies, we showed that the compound, 4′-methyl-N²-3-pyridinyl-4,5′-bi-1,3-thiazole-2,2′-diamine (JNK Docking (JD) compound 123, but not the related compound (4′-methyl-N ~ 2 ~ -(6-methyl-2-pyridinyl)-4,5′-bi-1,3-thiazole-2,2′-diamine (JD124), inhibited JNK1 activity towards a range of substrates. Molecular docking, saturation transfer difference NMR experiments and enzyme kinetic analyses revealed both ATP- and substrate-competitive inhibition of JNK by JD123. In characterizing JD123 further, we noted its ATP-competitive inhibition of the related p38-γ MAPK, but not ERK1, ERK2, or p38-α, p38-β or p38-δ. Further screening of a broad panel of kinases using 10 μM JD123, identified inhibition of kinases including protein kinase Bβ (PKBβ/Aktβ). Appropriately modified thiazole diamines, as typified by JD123, thus provide a new chemical scaffold for development of inhibitors for the JNK and p38-γ MAPKs as well as other kinases that are also potential therapeutic targets such as PKBβ/Aktβ.     

AN ASSESSMENT OF ECOLOGICAL CHANGES DURING THE RECENT HISTORY OF LAKE ONTARIO BASED ON SILICEOUS ALGAL MICROFOSSILS PRESERVED IN THE SEDIMENTS1,2

Quantitative analysis of siliceous algal microfossils (diatoms and chrysophytes) in a radiometrically dated core of Lake Ontario sediments shows striking modifications of the flora produced and preserved, apparently as a result of anthropogenic modification of nutrient loadings to the lake, Qualitatively similar microfossil assemblages were deposited during the period ca. 1700–1815. A single major event is recorded in assemblages deposited ca. 1769. Between this event horizon and ca. 1815 there was an apparent increase in algal production, but minimal change in species composition. A major disturbance occurred at the level of the Ambrosia horizon, ca. 1831–1847. Assemblages deposited between ca. 1855 and 1900 indicate increasing eutrophication. We infer that silica limitation became important by about 1860 and that the system reached its greatest effective production ca. 1900. Major modification of the flora occurred in the period ca. 1900–1945, with most local extinctions of major indigenous populations occurring ca. 1920–1945. Assemblages deposited in the period ca. 1945–1975 are composed of some stenothermal populations also present in pre-disturbance assemblages, a large component of benthic and nearshore planktonic species, and a number of apparently planktonic populations rarely recorded from large temperate lakes, particularly species of the genus Nitzschia. Our results indicate that the major factor driving species succession in Lake Ontario was phosphorus enrichment and consequent depletion of available silica supplies. Our results also show the importance of a species' physical niche in determining its survival under these conditions.     

SEXUAL REPRODUCTION IN STEPHANODISCUS NIAGARAE (BACILLARIOPHYTA)1

We observed sexual reproduction in a clonal culture of Stephanodiscus niagarae Ehrenb. and used light and scanning electron microscopy to absent flagellated male cells, auxospore growth, initial valve structure and production, and subsequent daughter cell division. Free auxospores were spherical and nonsiliceous throughout growth, producing hemispherical initial valves devoid of spines and with nonfasciculate striae. Pregametangial cells averaged 43% of the diameter of the daughter cell population and were 1/9 the biovolume of initial, cells. This paper is the first confirmed report of sexual reproduction in S. niagarae, although it appears that specimens of Actinocyclus niagarae H. L. Smith, described from Lake Erie in 1878, are actually initial valves of S. niagarae.     

REJUVENATION OF MELOSIRA GRANULATA (BACILLARIOPHYCEAE) RESTING CELLS FROM THE ANOXIC SEDIMENTS OF DOUGLAS LAKE,MICHIGAN. I. LIGHT MIGROSCOPY AND 14C UPTAKE 1

Resting cells of Melosira granulate (Ehr.) Ralfs were collected from the anoxic sediments of Douglas Lake, Michigan. Sediment containing M. granulata was inoculated into distilled water and incubated in a growth chamber for one week during which observations were made on the cytological differentiation process. Cells classified as “condensed,” i.e. containing a dark brown cytoplasmic mass were identified as resting cells. The differentiation process consisted of a series of gradual cytological changes that included elongation of the cytoplasmic mass and recognition of definable organelles to the point where the cells were non-distinguishable from water column vegetative cells. Differentiating cells accumulated large polyphosphate and lipid granules. However, these granules disappeared just prior to cell division. The complete differentiation or rejuvenation sequence occurred in some cells in less than 24 h. However, not all dormant cells rejuvenated at the same time and it was observed that the lag period for rejuvenation increased with resting cell age (depth of burial in sediments). In the ¹⁴C uptake studies, label was initially observed in condensed state cells. The label gradually progressed to the more differentiated forms. Total carbon uptake during the rejuvenation process was initially lower in the rejuvenating cells, but roughly equal to water column populations after 8 h, indicating a period of high metabolic activity in the rejuvenating cells between 1 and 8 h.     

Encoded metal nanoparticle-based molecular beacons for multiplexed detection of DNA

In this paper we describe a molecular beacon format assay in which encoded nanowire particles are used to achieve multiplexing. We demonstrate this principle with the detection of five viral pathogens; Hepatitis A virus, Hepatitis C virus, West Nile Virus, Human Immune Deficiency virus and Severe Acute Respiratory Syndrome virus. Oligonucleotides are designed complementary to a target sequence of interest containing a 3′ universal fluorescence dye. A 5′ thiol causes the oligonucleotides to self-assemble onto the metal nanowire. The single-stranded oligonucleotide contains a self-complementary hairpin stem sequence of 10 bases that forces the 3′ fluorophore to come into contact with the metallic nanowire surface, thereby quenching the fluorescence. Upon addition of target DNA, there is hybridization with the complementary oligonucleotides. The resulting DNA hybrid is rigid, unfolds the hairpin structure, and causes the fluorophore to be moved away from the surface such that it is no longer quenched. By using differently encoded nanowires, each conjugated with a different oligonucleotide sequence, multiplexed DNA assays are possible using a single fluorophore, from a multiplexed RT-PCR reaction.