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1.
Goda Pankaja Kumar Sekhar Thuraka Thriveni Pinnu Venkateswarlu Annavarapu Peddanna Kotha Reddy Peduri Suresh Krishna Mypati Hari Sreelatha Tumma 《Russian Journal of Bioorganic Chemistry》2021,47(6):1293-1300
Russian Journal of Bioorganic Chemistry - A simple, convenient, environmentally benign method has been developed for the synthesis of spiro-5-cyanopyrimidines by multi-component condensation of... 相似文献
2.
Proteins are complex macromolecules with dynamic conformations. They are charged like colloids, but unlike colloids, charge is heterogeneously distributed on their surfaces. Here we overturn entrenched doctrine that uncritically treats bovine serum albumin (BSA) as a colloidal hard sphere by elucidating the complex pH and surface hydration-dependence of solution viscosity. We measure the infinite shear viscosity of buffered BSA solutions in a parameter space chosen to tune competing long-range repulsions and short-range attractions (2 mg/mL ≤ [BSA] ≤ 500 mg/mL and 3.0 ≤ pH ≤ 7.4). We account for surface hydration through partial specific volume to define volume fraction and determine that the pH-dependent BSA intrinsic viscosity never equals the classical hard sphere result (2.5). We attempt to fit our data to the colloidal rheology models of Russel, Saville, and Schowalter (RSS) and Krieger-Dougherty (KD), which are each routinely and successfully applied to uniformly charged suspensions and to hard-sphere suspensions, respectively. We discover that the RSS model accurately describes our data at pH 3.0, 4.0, and 5.0, but fails at pH 6.0 and 7.4, due to steeply rising solution viscosity at high concentration. When we implement the KD model with the maximum packing volume fraction as the sole floating parameter while holding the intrinsic viscosity constant, we conclude that the model only succeeds at pH 6.0 and 7.4. These findings lead us to define a minimal framework for models of crowded protein solution viscosity wherein critical protein-specific attributes (namely, conformation, surface hydration, and surface charge distribution) are addressed. 相似文献
3.
Prasad?S. Sarangapani Steven?D. Hudson Kalman?B. Migler Jai?A. Pathak 《Biophysical journal》2013,105(10):2418-2426
Proteins are complex macromolecules with dynamic conformations. They are charged like colloids, but unlike colloids, charge is heterogeneously distributed on their surfaces. Here we overturn entrenched doctrine that uncritically treats bovine serum albumin (BSA) as a colloidal hard sphere by elucidating the complex pH and surface hydration-dependence of solution viscosity. We measure the infinite shear viscosity of buffered BSA solutions in a parameter space chosen to tune competing long-range repulsions and short-range attractions (2 mg/mL ≤ [BSA] ≤ 500 mg/mL and 3.0 ≤ pH ≤ 7.4). We account for surface hydration through partial specific volume to define volume fraction and determine that the pH-dependent BSA intrinsic viscosity never equals the classical hard sphere result (2.5). We attempt to fit our data to the colloidal rheology models of Russel, Saville, and Schowalter (RSS) and Krieger-Dougherty (KD), which are each routinely and successfully applied to uniformly charged suspensions and to hard-sphere suspensions, respectively. We discover that the RSS model accurately describes our data at pH 3.0, 4.0, and 5.0, but fails at pH 6.0 and 7.4, due to steeply rising solution viscosity at high concentration. When we implement the KD model with the maximum packing volume fraction as the sole floating parameter while holding the intrinsic viscosity constant, we conclude that the model only succeeds at pH 6.0 and 7.4. These findings lead us to define a minimal framework for models of crowded protein solution viscosity wherein critical protein-specific attributes (namely, conformation, surface hydration, and surface charge distribution) are addressed. 相似文献
4.
Ferdinamarie Sharmila Philomenadin Rashima Asokan Viswanathan N Ronnie George Vijaya Lingam Sripriya Sarangapani 《PloS one》2015,10(3)
Primary open angle glaucoma (POAG) belonging to a group of optic neuropathies, result from interaction between genetic and environmental factors. Study of associations with quantitative traits (QTs) is one of the successful strategies to understand the complex genetics of POAG. The current study attempts to explore the association of variations near/in genes like ATOH7, SIX1/SIX6 complex, CDKN2B, CARD10, and CDC7 with POAG and its QTs including vertical cup to disc ratio (VCDR), central corneal thickness (CCT), intra ocular pressure (IOP), and axial length (AL). Case-control study design was carried out in a sample size of 97 POAG cases and 371 controls from South India. Model-based (additive, recessive, dominant) association of the genotypes and their interaction was carried out between cases and controls using chi-square, linear and logistic regression methods. Nominal significance (P<0.05) was observed for QTs like i) VCDR with SNPs rs1900004 (ATOH7); rs1192415 (CDC7); rs10483727 (SIX1/SIX6), rs9607469 (CARD10); ii) CCT with rs1192415; iii) IOP with rs1900004 and iv) AL with rs1900004 and rs1063192 (CDKN2B). We were able to replicate previously known interactions between ATOH7-SIX6 and SIX6-CDKN2B along with few novel interactions between ATOH7—CDC7 and SIX6 with genes including CARD10 and CDC7. In summary, our results suggest that a probable interaction among the candidate genes for QTs, play a major role in determining the individual’s susceptibility to POAG. 相似文献
5.
T. Sreelatha A. Hymavathi J. Madhusudhana Murthy P.U. Rani J. Madhusudana Rao K. Suresh Babu 《Bioorganic & medicinal chemistry letters》2010,20(9):2974-2977
A bioassay-guided fractionation and chemical examination of chloroform extract of Plumbago capensis roots resulted in isolation and characterization of two new napthaquinone derivatives (4, 8) along with six known compounds (1–3, 5–7). Their structures were determined on the basis of extensive spectroscopic (IR, MS, 1D and 2D NMR) data analysis and by comparison with the literature data. All the compounds were tested for their mosquito larvicidal activity against fourth instar larvae of Aedes aegypti, and compared with that of rotenone. Among the tested compounds, isoshinanolone (3) and plumbagin (1) showed excellent toxicity with LC50 values of 1.26 and 5.43 μg/mL. New compound (8) displayed moderate toxicity against the tested mosquito species. 相似文献
6.
Reddy BV Rajeswari N Sarangapani M Roopa Reddy G Madan Ch Pranay Kumar K Srinivasa Rao M 《Bioorganic & medicinal chemistry letters》2011,21(21):6510-6514
Indole and its derivatives undergo smooth conjugate addition onto en-1,4-dione derived from isatin and acetophenone, in the presence of a catalytic amount of molecular iodine in acetonitrile under mild conditions to afford a novel class of 3-(1-(1H-indol-3-yl)-2-oxo-2-phenylethyl)indolin-2-one derivatives in good yields with high degree of 1,4-selectivity. Some of these compounds are found to exhibit modest antibacterial and antifungal properties. 相似文献
7.
Ghule Vikas Dasharath Sarangapani Radhakrishnan Jadhav Pandurang M. Tewari Surya P. 《Journal of molecular modeling》2011,17(6):1507-1515
Different nitro azole isomers based on five membered heterocyclics were designed and investigated using computational techniques
in order to find out the comprehensive relationships between structure and performances of these high nitrogen compounds.
Electronic structure of the molecules have been calculated using density functional theory (DFT) and the heat of formation
has been calculated using the isodesmic reaction approach at B3LYP/6-31G* level. All designed compounds show high positive
heat of formation due to the high nitrogen content and energetic nitro groups. The crystal densities of these energetic azoles
have been predicted with different force fields. All the energetic azoles show densities higher than 1.87 g/cm3. Detonation properties of energetic azoles are evaluated by using Kamlet-Jacobs equation based on the calculated densities
and heat of formations. It is found that energetic azoles show detonation velocity about 9.0 km/s, and detonation pressure
of 40GPa. Stability of the designed compounds has been predicted by evaluating the bond dissociation energy of the weakest
C-NO2 bond. The aromaticity using nucleus independent chemical shift (NICS) is also explored to predict the stability via delocalization
of the π-electrons. Charge on the nitro group is used to assess the impact sensitivity in the present study. Overall, the
study implies that all energetic azoles are found to be stable and expected to be the novel candidates of high energy density
materials (HEDMs). 相似文献
8.
This study aimed to design novel nitrogen-rich heptazine derivatives as high energy density materials (HEDM) by exploiting
systematic structure–property relationships. Molecular structures with diverse energetic substituents at varying positions
in the basic heptazine ring were designed. Density functional techniques were used for prediction of gas phase heat of formation
by employing an isodesmic approach, while crystal density was assessed by packing calculations. The results reveal that nitro
derivatives of heptazine possess a high heat of formation and further enhancement was achieved by the substitution of nitro
heterocycles. The crystal packing density of the designed compounds varied from 1.8 to 2 g cm−3, and hence, of all the designed molecules, nitro derivatives of heptazine exhibit better energetic performance characteristics
in terms of detonation velocity and pressure. The calculated band gap of the designed molecules was analyzed to establish
sensitivity correlations, and the results reveal that, in general, amino derivatives possess better insensitivity characteristics.
The overall performance of the designed compounds was moderate, and such compounds may find potential applications in gas
generators and smoke-free pyrotechnic fuels as they are rich in nitrogen content. 相似文献
9.
Receptor-ligand bonds that mediate cell adhesion are often subjected to forces that regulate their dissociation via modulating off-rates. Off-rates control how long receptor-ligand bonds last and how much force they withstand. One should therefore be able to determine off-rates from either bond lifetime or unbinding force measurements. However, substantial discrepancies exist between the force dependence of off-rates derived from the two types of measurements even for the same interactions, e.g., selectins dissociating from their ligands, which mediate the tethering and rolling of leukocytes on vascular surfaces during inflammation and immune surveillance. We used atomic force microscopy to measure survival times of P-selectin dissociating from P-selectin glycoprotein ligand 1 or from an antibody in both bond lifetime and unbinding force experiments. By a new method of data analysis, we showed that the discrepancies resulted from the assumption that off-rates were functions of force only. The off-rates derived from forced dissociation data depended not only on force but also on the history of force application. This finding provides a new paradigm for understanding how force regulates receptor-ligand interactions. 相似文献
10.
Low force decelerates L-selectin dissociation from P-selectin glycoprotein ligand-1 and endoglycan 总被引:14,自引:0,他引:14
Sarangapani KK Yago T Klopocki AG Lawrence MB Fieger CB Rosen SD McEver RP Zhu C 《The Journal of biological chemistry》2004,279(3):2291-2298
Selectin-ligand interactions mediate the tethering and rolling of circulating leukocytes on vascular surfaces during inflammation and immune surveillance. To support rolling, these interactions are thought to have rapid off-rates that increase slowly as wall shear stress increases. However, the increase of off-rate with force, an intuitive characteristic named slip bonds, is at odds with a shear threshold requirement for selectin-mediated cell rolling. As shear drops below the threshold, fewer cells roll and those that do roll less stably and with higher velocity. We recently demonstrated a low force regime where the off-rate of P-selectin interacting with P-selectin glycoprotein ligand-1 (PSGL-1) decreased with increasing force. This counter-intuitive characteristic, named catch bonds, might partially explain the shear threshold phenomenon. Because L-selectin-mediated cell rolling exhibits a much more pronounced shear threshold, we used atomic force microscopy and flow chamber experiments to determine off-rates of L-selectin interacting with their physiological ligands and with an antibody. Catch bonds were observed at low forces for L-selectin-PSGL-1 interactions coinciding with the shear threshold range, whereas slip bonds were observed at higher forces. These catch-slip transitional bonds were also observed for L-selectin interacting with endoglycan, a newly identified PSGL-1-like ligand. By contrast, only slip bonds were observed for L-selectin-antibody interactions. These findings suggest that catch bonds contribute to the shear threshold for rolling and are a common characteristic of selectin-ligand interactions. 相似文献