Comprehensive review of antimicrobial activities of plant flavonoids

Flavonoids are one of the largest classes of small molecular secondary metabolites produced in different parts of the plant. They display a wide range of pharmacological and beneficial health effects for humans, which include, among others, antioxidative activity, free radical scavenging capacity, coronary heart disease prevention and antiatherosclerotic, hepatoprotective, anti-inflammatory, and anticancer activities. Hence, flavonoids are gaining high attention from the pharmaceutical and healthcare industries. Notably, plants synthesize flavonoids in response to microbial infection, and these compounds have been found to be a potent antimicrobial agent against a wide range of pathogenic microorganisms in vitro. Antimicrobial action of flavonoids results from their various biological activities, which may not seem very specific at first. There are, however, promising antibacterial flavonoids that are able not only to selectively target bacterial cells, but also to inhibit virulence factors, as well as other forms of microbial threats, e.g. biofilm formation. Moreover, some plant flavonoids manifest ability to reverse the antibiotic resistance and enhance action of the current antibiotic drugs. Hence, the development and application of flavonoid-based drugs could be a promising approach for antibiotic-resistant infections. This review aims to improve our understanding of the biological and molecular roles of plant flavonoids, focusing mostly on their antimicrobial activities.

     

Microbial diversity of an Antarctic subglacial community and high-resolution replicate sampling inform hydrological connectivity in a polar desert

Antarctic subglacial environments host microbial ecosystems and are proving to be geochemically and biologically diverse. The Taylor Glacier, Antarctica, periodically expels iron-rich brine through a conduit sourced from a deep subglacial aquifer, creating a dramatic red surface feature known as Blood Falls. We used Illumina MiSeq sequencing to describe the core microbiome of this subglacial brine and identified previously undetected but abundant groups including the candidate bacterial phylum Atribacteria and archaeal phylum Pacearchaeota. Our work represents the first microbial characterization of samples collected from within a glacier using a melt probe, and the only Antarctic subglacial aquatic environment that, to date, has been sampled twice. A comparative analysis showed the brine community to be stable at the operational taxonomic unit level of 99% identity over a decade. Higher resolution sequencing enabled deconvolution of the microbiome of subglacial brine from mixtures of materials collected at the glacier surface. Diversity patterns between this brine and samples from the surrounding landscape provide insight into the hydrological connectivity of subglacial fluids to the surface polar desert environment. Understanding subice brines collected on the surfaces of thick ice covers has implications for analyses of expelled materials that may be sampled on icy extraterrestrial worlds.     

Organization of repetitive DNAs and the genomic regions carrying ribosomal RNA,<Emphasis Type="Italic"> cob</Emphasis>, and<Emphasis Type="Italic"> atp9</Emphasis> genes in the cucurbit mitochondrial genomes

Plants in the genus Cucumis (cucumber and melon) have the largest mitochondrial genomes known among all plants, due in part to the accumulation of repetitive DNAs of varying complexities. Recombination among these repetitive DNAs should produce highly rearranged mitochondrial genomes relative to the smaller mitochondrial genomes of related plants. We cloned and sequenced mitochondrial genomic regions near the rRNA, atp9 and cob genes from cucumber, melon, squash and watermelon (all members of the Cucurbitaceae family), and compared to the previously sequenced mitochondrial genomes of Arabidopsis thaliana and sugar beet to study the distribution and arrangement of coding and repetitive DNAs. Cucumber and melon had regions of concentrated repetitive DNAs spread throughout the sequenced regions; few repetitive DNAs were revealed in the mitochondrial genomes of A. thaliana, sugar beet, squash and watermelon. Recombination among these repetitive DNAs most likely produced unique arrangements of the rrn18 and rrn5 genes in the genus Cucumis. Cucumber mitochondrial DNA had more pockets of dispersed direct and inverted repeats than melon and the other plants, and we did not reveal repetitive sequences significantly contributing to mitochondrial genome expansion in both cucumber and melon.Disclaimer. Names are necessary to report factually on available data; however, the U.S. Department of Agriculture (USDA) neither guarantees nor warrants the standard of the product, and the use of the name by USDA implies no approval of the product to the exclusion of others that may also be suitable.Communicated by R. Hagemann     

Regulation of the Expression of the sn-Glycerol-3-Phosphate Dehydrogenase Gene in Drosophila melanogaster

P element-mediated transformation has been usedto investigate the regulation of expression of thesn-glycerol-3-phosphate dehydrogenase gene ofDrosophila melanogaster. A 13-kb constructcontaining the eight exons and associated introns, 5 kb of the5′ region, and 3 kb downstream from the structuralgene produced normal levels of enzyme activity andrescued the poor viability of flies lacking the enzyme. All the regulatory elements essential fornormal enzyme expression were located in a fragment thatincluded the exons and introns and 1-kb upstreamnoncoding sequence. Deletions of the 1.6-kb secondintron reduced activity to 25%. Transformants withfusion constructs between the sn-glycerol-3-phosphatedehydrogenase gene and the beta-galactosidase gene fromE. coli revealed three elements that affectedexpression. A (CT)₉ repeat element at the5′ end of the second intron increased expressionin both larvae and adults, particularly at emergence. Asecond regulatory element, which includes a(CT)₇ repeat, was located 5′ to the TATA box and had similareffects on the gene's expression. A third, undefined,enhancer was located in the second intron, between 0.5and 1.8 kb downstream of the translation initiationcodon. This element increases enzyme activity to asimilar extent in larvae and adults but has littleeffect when the enhancer at the 5′ end of theintron is present.     

Involvement of chitin in exoskeleton morphogenesis in Drosophila melanogaster

Exoskeletons stabilize cell, tissue, and body morphology in many living organisms including fungi, plants, and arthropods. In insects, the exoskeleton, the cuticle, is produced by epidermal cells as a protein extracellular matrix containing lipids and the polysaccharide chitin, and its formation requires coordinated synthesis, distribution, and modification of these components. Eventually, the stepwise secretion and sorting of the cuticle material results in a layered structure comprising the envelope, the proteinaceous epicuticle, and the chitinous procuticle. To study the role of chitin during cuticle development, we analyzed the consequences of chitin absence in the embryo of Drosophila melanogaster caused by mutations in the Chitin Synthase-1 (CS-1) gene, called krotzkopf verkehrt (kkv). Our histological data confirm that chitin is essential for procuticle integrity and further demonstrate that an intact procuticle is important to assemble and to stabilize the chitin-less epicuticle. Moreover, the phenotype of CS-1/kkv mutant embryos indicates that chitin is required to attach the cuticle to the epidermal cells, thereby maintaining epidermal morphology. Finally, sclerotization and pigmentation, which are the last steps in cuticle differentiation, are impaired in tissues lacking CS-1/kkv function, suggesting that proper cuticle structure is crucial for the activity of the underlying enzymes.     

Distribution of <Emphasis Type="Italic">Calanus</Emphasis> populations in a glaciated fjord in the Arctic (Hornsund,Spitsbergen)—the interplay between biological and physical factors

The distribution and diversity of copepods of the genus Calanus were investigated in Hornsund Fjord (on the southwest coast of Spitsbergen) in summer 2001. The Bhattacharya method was used to sort individuals by species based on their prosome length. The established prosome length boundary values for the Calanus copepodid stages coincided with those defined for the Calanus species from Kongsfjorden (on the northwest coast of Spitsbergen). The predominant species in the main and inner fjord basins was Calanus glacialis, whereas Calanus finmarchicus was the prevailing species outside Hornsund. Younger copepodid stages (CI–CIII) of both species concentrated in the surface water layers (0–50∼70 m), while older copepodids (CIV–CVI females) that were ready for wintering stayed in deep layers (50∼70 m to bottom). Calanus hyperboreus was present in low numbers, predominantly as CIV, and in Hornsund deep water layers. The distribution and diversity of Calanus species complied with the notion that the marine fauna in Hornsund is of a more Arctic character than in Kongsfjorden, a fjord 260 km to the north on the west coast of Spitsbergen.     

Impact of warm water advection on the winter zooplankton community in an Arctic fjord

The west coast of Spitsbergen is influenced by water masses of Atlantic and Arctic origin. During the winter of January–April 2006, water temperatures on the West Spitsbergen Shelf were ∼3°C warmer than typical winter conditions, leading to a coastal sea ice cover of reduced thickness, extent and duration. A sediment trap deployed from September 2005 to May 2006 in the outer basin of Kongsfjorden (NW Spitsbergen) at a depth of 115 m has provided a continuous winter time-series of zooplankton during a period of rapid increase in water temperatures. Prior to an anomalous and prolonged influx of warm Atlantic water (AW) starting at the end of January, the trap samples were dominated by the boreo-Arctic copepod Metridia longa. Species that increased in abundance during the influx included late stages of Calanus finmarchicus, C. glacialis, C. hyperboreus and Paraeuchaeta norvegica. The early introduction of shelf populations into the fjord, and thus increased copepod biomass relative to typical winter conditions with little advection, has implications for the marine pelagic food web and pelagic-benthic coupling.