Methane and carbon dioxide emissions from inland waters in India – implications for large scale greenhouse gas balances

Inland waters were recently recognized to be important sources of methane (CH₄) and carbon dioxide (CO₂) to the atmosphere, and including inland water emissions in large scale greenhouse gas (GHG) budgets may potentially offset the estimated carbon sink in many areas. However, the lack of GHG flux measurements and well‐defined inland water areas for extrapolation, make the magnitude of the potential offset unclear. This study presents coordinated flux measurements of CH₄ and CO₂ in multiple lakes, ponds, rivers, open wells, reservoirs, springs, and canals in India. All these inland water types, representative of common aquatic ecosystems in India, emitted substantial amounts of CH₄ and a major fraction also emitted CO₂. The total CH₄ flux (including ebullition and diffusion) from all the 45 systems ranged from 0.01 to 52.1 mmol m^?2 d^?1, with a mean of 7.8 ± 12.7 (mean ± 1 SD) mmol m^?2 d^?1. The mean surface water CH₄ concentration was 3.8 ± 14.5 μm (range 0.03–92.1 μm ). The CO₂ fluxes ranged from ?28.2 to 262.4 mmol m^?2 d^?1 and the mean flux was 51.9 ± 71.1 mmol m^?2 d^?1. The mean partial pressure of CO₂ was 2927 ± 3269 μatm (range: 400–11 467 μatm). Conservative extrapolation to whole India, considering the specific area of the different water types studied, yielded average emissions of 2.1 Tg CH₄ yr^?1 and 22.0 Tg CO₂ yr^?1 from India's inland waters. When expressed as CO₂ equivalents, this amounts to 75 Tg CO₂ equivalents yr^?1 (53–98 Tg CO₂ equivalents yr^?1; ± 1 SD)_, with CH₄ contributing 71%. Hence, average inland water GHG emissions, which were not previously considered, correspond to 42% (30–55%) of the estimated land carbon sink of India. Thereby this study illustrates the importance of considering inland water GHG exchange in large scale assessments.     

Insights from the molecular docking of withanolide derivatives to the target protein PknG from Mycobacterium tuberculosis

A crucial virulence factor for intracellular Mycobacterium tuberculosis survival is Protein kinase G (PknG), a eukaryotic-like serinethreonine protein kinase expressed by pathogenic mycobacteria that blocks the intracellular degradation of mycobacteria in lysosomes. Inhibition of PknG results in mycobacterial transfer to lysosomes. Withania somnifera, a reputed herb in ayurvedic medicine, comprises a large number of steroidal lactones known as withanolides which show various pharmacological activities. We describe the docking of 26 withanferin and 14 withanolides from Withania somnifera into the three dimensional structure of PknG of M. tuberculosis using GLIDE. The inhibitor binding positions and affinity were evaluated using scoring functions- Glidescore. The withanolide E, F and D and Withaferin - diacetate 2 phenoxy ethyl carbonate were identified as potential inhibitors of PknG. The available drug molecules and the ligand AX20017 showed hydrogen bond interaction with the aminoacid residues Glu233 and Val235. In addition to Val235 the other amino acids, Gly237, Gln238 and Ser239 are important for withanolide inhibitor recognition via hydrogen bonding mechanisms.     

Forest streams are important sources for nitrous oxide emissions

Streams and river networks are increasingly recognized as significant sources for the greenhouse gas nitrous oxide (N₂O). N₂O is a transformation product of nitrogenous compounds in soil, sediment and water. Agricultural areas are considered a particular hotspot for emissions because of the large input of nitrogen (N) fertilizers applied on arable land. However, there is little information on N₂O emissions from forest streams although they constitute a major part of the total stream network globally. Here, we compiled N₂O concentration data from low‐order streams (~1,000 observations from 172 stream sites) covering a large geographical gradient in Sweden from the temperate to the boreal zone and representing catchments with various degrees of agriculture and forest coverage. Our results showed that agricultural and forest streams had comparable N₂O concentrations of 1.6 ± 2.1 and 1.3 ± 1.8 µg N/L, respectively (mean ± SD) despite higher total N (TN) concentrations in agricultural streams (1,520 ± 1,640 vs. 780 ± 600 µg N/L). Although clear patterns linking N₂O concentrations and environmental variables were difficult to discern, the percent saturation of N₂O in the streams was positively correlated with stream concentration of TN and negatively correlated with pH. We speculate that the apparent contradiction between lower TN concentration but similar N₂O concentrations in forest streams than in agricultural streams is due to the low pH (<6) in forest soils and streams which affects denitrification and yields higher N₂O emissions. An estimate of the N₂O emission from low‐order streams at the national scale revealed that ~1.8 × 10⁹ g N₂O‐N are emitted annually in Sweden, with forest streams contributing about 80% of the total stream emission. Hence, our results provide evidence that forest streams can act as substantial N₂O sources in the landscape with 800 × 10⁹ g CO₂‐eq emitted annually in Sweden, equivalent to 25% of the total N₂O emissions from the Swedish agricultural sector.     

Growth,reproductive biology and life cycle of the vermicomposting earthworm, Perionyx ceylanensis Mich. (Oligochaeta: Megascolecidae)

In the present study, an attempt has been made to study the growth, reproduction and life cycle of the earthworm, Perionyx ceylanensis Mich. in cowdung for the period of 340 days. Results showed that the overall mean growth rate was 1.79, 1.57 and 1.34 mg/worm/day respectively for the worms cultured singly, in batches of four and eight. Cocoon production rate was found between 0.85 and 0.94 cocoons/worm/day and the hatching success between 74.67% and 82.67%. The majority of the cocoons (95.16–96.77%) hatched only one hatchling. Worms raised singly also produced viable cocoons indicating that P. ceylanensis reproduce parthenogenetically. The life cycle of the worms cultured singly was ±57 days and it was ±50 days for the worms cultured in batches of four and eight. There is a vast scope to utilize P. ceylanensis for vermiculture practices due to short period of life cycle.     

Pharmacophore and Virtual Screening of JAK3 inhibitors

Janus kinase 3 (JAK3) is a non-receptor tyrosine kinases family of protein which is comprised of JAK1, JAK2, JAK3 and TYK2. It plays an important role in immune function and lymphoid development and it only resides in the hematopoietic system. Therefore, selective targeting JAK3 is a rational approach in developing new therapeutic molecule. In this study, about 116 JAK3 inhibitors were collected from the literature and were used to build four-point pharmacophore model using Phase (Schrodinger module). The statistically significant pharmacophore hypothesis of AAHR.92 with r2 value of 0.942 was used as 3D query to search against 3D database namely Zincpharmer. A total of 2, 27,483 compounds obtained as hit were subjected to high throughput virtual screening (HTVS module of Schrodinger). Among the hits, ten compounds with good G-score ranging from -12.96 to -11.18 with good binding energy to JAK3 were identified.     

Influence of weather variables on methane and carbon dioxide flux from a shallow pond

Freshwaters are important sources of the greenhouse gases methane (CH₄) and carbon dioxide (CO₂) to the atmosphere. Knowledge about temporal variability in these fluxes is very limited, yet critical for proper study design and evaluating flux data. Further, to understand the reasons for the variability and allow predictive modeling, the temporal variability has to be related to relevant environmental variables. Here we analyzed the effect of weather variables on CH₄ and CO₂ flux from a small shallow pond during a period of 4 months. Mean CH₄ flux and surface water CH₄ concentration were 8.0 [3.3–15.1] ± 3.1 mmol m^?2 day^?1 (mean [range] ± 1 SD) and 1.3 [0.3–3.5] ± 0.9 µM respectively. Mean CO₂ flux was 1.1 [?9.8 to 16.0] ± 6.9 mmol m^?2 day^?1. Substantial diel changes in CO₂ flux and surface water CH₄ concentration were observed during detailed measurements over a 24 h cycle. Thus diel patterns need to be accounted for in future measurements. Significant positive correlations of CH₄ emissions with temperature were found and could include both direct temperature effects as well as indirect effects (e.g. related to the growth season and macrophyte primary productivity providing organic substrates). CO₂ flux on the other hand was negatively correlated to temperature and solar radiation, presumably because CO₂ consumption by plants was higher relative to CO₂ production by respiration during warm sunny days. Interestingly, CH₄ fluxes were comparable to ponds with similar morphometry and macrophyte abundance in the tropics. We therefore hypothesize that CH₄ and CO₂ summer emissions from ponds could be more related to the morphometry and dominating primary producers rather than latitude per se. Data indicate that CH₄ emissions, given the system characteristic frameworks, is positively affected by increased temperatures or prolonged growth seasons.